Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009250

Physical Location & Seq

Genomic Coordinates Forward (+)

7560688 .. 7563472

Gene Structure 2785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G21465.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGCAATATCTATCGCACTCTCGTAGAATCGCTCGGGCTTTGAAACCACTAGCTCTCGTCGAGACCGATGTGAGATTTGTATCCAATGCTCCTTCTCATGTTGTTCATCGATCTCTTTCCCACTCTGTATTTCCAGGAAAAATGGATACTTGTAATCAGTTATATGCTCAATCACCTATGACGGGGTTGATGATGTTGAGAGCTAACTTCTCCTCTGAAGCAAAACATGTTGAGAATCCTACAGAGGCTGTCAAGGAATTACATAGTAAAATACTTGATTCTGTGAATGTCAAGAGATCGATGCCTCCAAATGCTTGGTTGTGGTCATTGATTGACAACTGTCGGAACGAGGATGACATTAGTTTTCTGTTTGATGTTCTGCAGAATCTACGGAGATTTAGATTGTCCAATCTTCGTATTCATGACAACTTTAATTGCAATCTATGCCAGCAAGTTGCTAAGACTTGTGTACGTGTGGGGGCAATTAACCATGGTAAAAGGGCTCTTTGGAAACATAACGTTCATGGTTTGACTCCTAGTGTTGCATCTGCACACCATTTACTGTCATACGCATTAAAGCATAAGGACGCCAAACTGATGGATGAAGTTATGAAACTCCTGAAGATGAATAACCTGCCTTTACAACCTGGGACAGCGGATTTAGTTTTCAGGATCTGTCATGATACAGATAACTGGGATCTATTAGTTAAGTACTCGAAGAAATTCTGCAAAGCTGGAGTCAAGCTCAGGAAGACCACATTTGATGTCTGGATGGAATTTGCTGCCAAAAGAGGAGACACAGAGTCGTTATGGAATGTTGATAAACTGAGATCTGAGACTTACACTCAACACACCCTTTCCGGTGCTTTTTCATGTGCAAAGGGTTTTCTGCTAGAACATAAACCTGAAGAAGCTGCTGCAGTCATCCAAATTATCTGTCAGGCGTATCCTGATGAGAAGAAGTCAGCACTTGAGGCTGAATTCAAGAAGCTGGTAAACGAGTGGTCTGTTGACATTATCAAGCACCAAAATGAACAAGATAAGAAGGACGTAGCTGCATCACTGAAATCTGACATCCCTGCAATGGTCAATGCTTTGGTAAACTCTGGTTTGAGAGTAAGAGTGGATTTAAATGAGTTAAACAAGAATGAAGCTCTTCTTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

388

Amino Acids

44.06

Weight (kDa)

9.07

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21465 AT3G21465 AT4G15640 AT4G15640
fragaria_vesca	FvH4_4g17340 FvH4_4g17340
malus_domestica	MD13G1173000.v1.1 MD16G1174400.v1.1
prunus_persica	Prupe.1G141100_v2.0.a1
pyrus_communis	pycom13g14850 pycom16g14600
rosa_chinensis	RchiOBHm_Chr4g0421281 RchiOBHm_Chr4g0421901
rosa_laevigata	RLG00000007701
rosa_multiflora	Rmu_sc0007721.1_g000005
rosa_roxburghii	Rroxscaffold_5G00363510
rosa_rugosa	Rorug04G0169500
rosa_samantha	Rh4AG230400 Rh4BG233400 Rh4CG244600 Rh4DG229100
rosa_wichuraiana	Rw4G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	642
AciI	CCGC	1 cut(s)	656
AclI	AACGTT	1 cut(s)	519
AclWI	GGATC	2 cut(s)	680, 705
AcsI	RAATTY	3 cut(s)	722, 776, 980
AcuI	CTGAAG	3 cut(s)	237, 641, 927
AcyI	GRCGYC	1 cut(s)	588
AfaI	GTAC	2 cut(s)	471, 713
AfiI	CCNNNNNNNGG	2 cut(s)	182, 1084
AflIII	ACRYGT	2 cut(s)	226, 472
AgsI	TTSAA	2 cut(s)	43, 985
AhdI	GACNNNNNGTC	1 cut(s)	802
AjnI	CCWGG	2 cut(s)	133, 646
AluBI	AGCT	9 cut(s)	53, 203, 734, 745, 914, 991, 1055, 1154, 1164
AluI	AGCT	9 cut(s)	53, 203, 734, 745, 914, 991, 1055, 1154, 1164
Alw26I	GTCTC	3 cut(s)	56, 789, 830
AlwI	GGATC	2 cut(s)	680, 705
AlwNI	CAGNNNCTG	2 cut(s)	248, 675
Ama87I	CYCGRG	1 cut(s)	33
ApeKI	GCWGC	4 cut(s)	782, 914, 917, 1055
ApoI	RAATTY	3 cut(s)	722, 776, 980
ArsI	GACNNNNNNTTYG	4 cut(s)	723, 755, 922, 954
Asp700I	GAANNNNTTC	2 cut(s)	722, 1155
AsuHPI	GGTGA	1 cut(s)	165
AvaI	CYCGRG	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	505
BbsI	GAAGAC	1 cut(s)	758
BbvI	GCAGC	4 cut(s)	769, 901, 904, 1042
BccI	CCATC	2 cut(s)	592, 766
BciT130I	CCWGG	2 cut(s)	135, 648
BciVI	GTATCC	3 cut(s)	91, 139, 957
BcoDI	GTCTC	3 cut(s)	56, 789, 830
BfaI	CTAG	3 cut(s)	50, 537, 893
BfmI	CTRYAG	3 cut(s)	240, 380, 918
BfuAI	ACCTGC	1 cut(s)	642
BfuI	GTATCC	3 cut(s)	91, 139, 957
BglII	AGATCT	1 cut(s)	830
BisI	GCNGC	4 cut(s)	783, 915, 918, 1056
BlsI	GCNGC	4 cut(s)	784, 916, 919, 1057
BmcAI	AGTACT	1 cut(s)	713
Bme1390I	CCNGG	2 cut(s)	135, 648
BmeRI	GACNNNNNGTC	1 cut(s)	802
BmeT110I	CYCGRG	1 cut(s)	33
BmrFI	CCNGG	2 cut(s)	135, 648
BmrI	ACTGGG	1 cut(s)	703
BmsI	GCATC	3 cut(s)	291, 554, 1067
BmuI	ACTGGG	1 cut(s)	703
BoxI	GACNNNNGTC	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	758
BplI	GAGNNNNNCTC	2 cut(s)	729, 761
BpmI	CTGGAG	1 cut(s)	756
Bpu10I	CCTNAGC	1 cut(s)	746
BpuEI	CTTGAG	1 cut(s)	992
Bsa29I	ATCGAT	2 cut(s)	109, 299
BsaAI	YACGTR	1 cut(s)	473
BsaBI	GATNNNNATC	1 cut(s)	79
BsaHI	GRCGYC	1 cut(s)	588
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	490, 647
BsaWI	WCCGGW	1 cut(s)	860
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 1084
Bse1I	ACTGG	1 cut(s)	698
Bse3DI	GCAATG	1 cut(s)	1089
Bse8I	GATNNNNATC	1 cut(s)	79
BseBI	CCWGG	2 cut(s)	135, 648
BseCI	ATCGAT	2 cut(s)	109, 299
BseDI	CCNNGG	2 cut(s)	490, 647
BseGI	GGATG	5 cut(s)	358, 607, 777, 924, 1074
BseJI	GATNNNNATC	1 cut(s)	79
BseLI	CCNNNNNNNGG	2 cut(s)	182, 1084
BseMI	GCAATG	1 cut(s)	1089
BseMII	CTCAG	3 cut(s)	760, 818, 825
BseNI	ACTGG	1 cut(s)	698
BseRI	GAGGAG	2 cut(s)	202, 807
BseXI	GCAGC	4 cut(s)	769, 901, 904, 1042
BsgI	GTGCAG	1 cut(s)	534
BshVI	ATCGAT	2 cut(s)	109, 299
BsiHKCI	CYCGRG	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	861
BslFI	GGGAC	1 cut(s)	664
BslI	CCNNNNNNNGG	2 cut(s)	182, 1084
BsmAI	GTCTC	3 cut(s)	56, 789, 830
BsmFI	GGGAC	1 cut(s)	664
Bso31I	GGTCTC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	505
Bsp143I	GATC	5 cut(s)	110, 296, 672, 697, 830
Bsp19I	CCATGG	1 cut(s)	490
BspACI	CCGC	1 cut(s)	656
BspCNI	CTCAG	3 cut(s)	759, 819, 826
BspDI	ATCGAT	2 cut(s)	109, 299
BspHI	TCATGA	2 cut(s)	421, 679
BspMAI	CTGCAG	2 cut(s)	384, 922
BspMI	ACCTGC	1 cut(s)	642
BspPI	GGATC	2 cut(s)	680, 705
BspQI	GCTCTTC	1 cut(s)	1161
BspTNI	GGTCTC	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	1089
BsrI	ACTGG	1 cut(s)	698
BssECI	CCNNGG	2 cut(s)	490, 647
BssMI	GATC	5 cut(s)	110, 296, 672, 697, 830
BssNI	GRCGYC	1 cut(s)	588
BssT1I	CCWWGG	1 cut(s)	490
Bst2UI	CCWGG	2 cut(s)	135, 648
Bst4CI	ACNGT	2 cut(s)	341, 564
Bst6I	CTCTTC	1 cut(s)	1161
BstACI	GRCGYC	1 cut(s)	588
BstAPI	GCANNNNNTGC	1 cut(s)	444
BstBAI	YACGTR	1 cut(s)	473
BstC8I	GCNNGC	1 cut(s)	449
BstDEI	CTNAG	5 cut(s)	459, 746, 827, 834, 1160
BstDSI	CCRYGG	1 cut(s)	490
BstF5I	GGATG	5 cut(s)	358, 607, 777, 924, 1074
BstKTI	GATC	5 cut(s)	113, 299, 675, 700, 833
BstMAI	GTCTC	3 cut(s)	56, 789, 830
BstMBI	GATC	5 cut(s)	110, 296, 672, 697, 830
BstMWI	GCNNNNNNNGC	2 cut(s)	444, 974
BstNI	CCWGG	2 cut(s)	135, 648
BstNSI	RCATGY	1 cut(s)	230
BstPAI	GACNNNNGTC	1 cut(s)	339
BstSCI	CCNGG	2 cut(s)	133, 646
BstSFI	CTRYAG	3 cut(s)	240, 380, 918
BstV1I	GCAGC	4 cut(s)	769, 901, 904, 1042
BstV2I	GAAGAC	1 cut(s)	758
BstX2I	RGATCY	3 cut(s)	672, 697, 830
BstXI	CCANNNNNNTGG	2 cut(s)	315, 598
BstYI	RGATCY	3 cut(s)	672, 697, 830
Bsu15I	ATCGAT	2 cut(s)	109, 299
BsuI	GTATCC	3 cut(s)	91, 139, 957
BsuTUI	ATCGAT	2 cut(s)	109, 299
BtgI	CCRYGG	1 cut(s)	490
BtsCI	GGATG	5 cut(s)	358, 607, 777, 924, 1074
BtsIMutI	CAGTG	1 cut(s)	1061
BveI	ACCTGC	1 cut(s)	642
Cac8I	GCNNGC	1 cut(s)	449
CaiI	CAGNNNCTG	2 cut(s)	248, 675
CciI	TCATGA	2 cut(s)	421, 679
ClaI	ATCGAT	2 cut(s)	109, 299
CseI	GACGC	1 cut(s)	596
Csp6I	GTAC	2 cut(s)	470, 712
CviAII	CATG	7 cut(s)	98, 227, 422, 491, 524, 680, 873
CviQI	GTAC	2 cut(s)	470, 712
DdeI	CTNAG	5 cut(s)	459, 746, 827, 834, 1160
DpnI	GATC	5 cut(s)	112, 298, 674, 699, 832
DpnII	GATC	5 cut(s)	110, 296, 672, 697, 830
DraI	TTTAAA	1 cut(s)	1131
DriI	GACNNNNNGTC	1 cut(s)	802
Eam1104I	CTCTTC	1 cut(s)	1161
Eam1105I	GACNNNNNGTC	1 cut(s)	802
EarI	CTCTTC	1 cut(s)	1161
Eco130I	CCWWGG	1 cut(s)	490
Eco24I	GRGCYC	1 cut(s)	505
Eco31I	GGTCTC	1 cut(s)	56
Eco57I	CTGAAG	3 cut(s)	237, 641, 927
Eco88I	CYCGRG	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	980
EcoRII	CCWGG	2 cut(s)	133, 646
EcoT14I	CCWWGG	1 cut(s)	490
EcoT38I	GRGCYC	1 cut(s)	505
ErhI	CCWWGG	1 cut(s)	490
FaeI	CATG	7 cut(s)	101, 230, 425, 494, 527, 683, 876
FalI	AAGNNNNNCTT	1 cut(s)	1143
FaqI	GGGAC	1 cut(s)	664
FatI	CATG	7 cut(s)	97, 226, 421, 490, 523, 679, 872
Fnu4HI	GCNGC	4 cut(s)	783, 915, 918, 1056
FokI	GGATG	5 cut(s)	365, 614, 784, 911, 1061
FriOI	GRGCYC	1 cut(s)	505
Fsp4HI	GCNGC	4 cut(s)	783, 915, 918, 1056
FspBI	CTAG	3 cut(s)	50, 537, 893
GluI	GCNGC	4 cut(s)	783, 915, 918, 1056
GsuI	CTGGAG	1 cut(s)	756
HapII	CCGG	1 cut(s)	861
HgaI	GACGC	1 cut(s)	596
Hin1I	GRCGYC	1 cut(s)	588
Hin1II	CATG	7 cut(s)	101, 230, 425, 494, 527, 683, 876
HincII	GTYRAC	1 cut(s)	1012
HindII	GTYRAC	1 cut(s)	1012
HinfI	GANTC	7 cut(s)	27, 235, 278, 385, 532, 738, 803
HpaII	CCGG	1 cut(s)	861
HphI	GGTGA	1 cut(s)	165
Hpy166II	GTNNAC	4 cut(s)	470, 997, 1012, 1102
Hpy188I	TCNGA	4 cut(s)	217, 345, 835, 1072
Hpy8I	GTNNAC	4 cut(s)	470, 997, 1012, 1102
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	102, 1039
HpyCH4III	ACNGT	2 cut(s)	341, 564
HpyCH4IV	ACGT	3 cut(s)	472, 519, 1050
HpyF10VI	GCNNNNNNNGC	2 cut(s)	444, 974
HpyF3I	CTNAG	5 cut(s)	459, 746, 827, 834, 1160
HpySE526I	ACGT	3 cut(s)	472, 519, 1050
Hsp92I	GRCGYC	1 cut(s)	588
Hsp92II	CATG	7 cut(s)	101, 230, 425, 494, 527, 683, 876
Kzo9I	GATC	5 cut(s)	110, 296, 672, 697, 830
LguI	GCTCTTC	1 cut(s)	1161
LmnI	GCTCC	1 cut(s)	94
Lsp1109I	GCAGC	4 cut(s)	769, 901, 904, 1042
LweI	GCATC	3 cut(s)	291, 554, 1067
MaeI	CTAG	3 cut(s)	50, 537, 893
MaeII	ACGT	3 cut(s)	472, 519, 1050
MalI	GATC	5 cut(s)	112, 298, 674, 699, 832
MboI	GATC	5 cut(s)	110, 296, 672, 697, 830
MboII	GAAGA	7 cut(s)	404, 634, 730, 763, 920, 970, 1148
MflI	RGATCY	3 cut(s)	672, 697, 830
MhlI	GDGCHC	1 cut(s)	505
MluCI	AATT	7 cut(s)	257, 433, 483, 722, 776, 930, 980
MlyI	GAGTC	3 cut(s)	526, 747, 812
MmeI	TCCRAC	1 cut(s)	323
MnlI	CCTC	6 cut(s)	223, 238, 315, 343, 785, 967
MroXI	GAANNNNTTC	2 cut(s)	722, 1155
MseI	TTAA	6 cut(s)	432, 486, 575, 708, 1130, 1139
MslI	CAYNNNNRTG	1 cut(s)	1029
MspA1I	CMGCKG	1 cut(s)	656
MspI	CCGG	1 cut(s)	861
MspR9I	CCNGG	2 cut(s)	135, 648
MvaI	CCWGG	2 cut(s)	135, 648
MwoI	GCNNNNNNNGC	2 cut(s)	444, 974
NcoI	CCATGG	1 cut(s)	490
NdeII	GATC	5 cut(s)	110, 296, 672, 697, 830
NlaIII	CATG	7 cut(s)	101, 230, 425, 494, 527, 683, 876
NspI	RCATGY	1 cut(s)	230
PagI	TCATGA	2 cut(s)	421, 679
PciI	ACATGT	1 cut(s)	226
PciSI	GCTCTTC	1 cut(s)	1161
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PdmI	GAANNNNTTC	2 cut(s)	722, 1155
PfeI	GAWTC	4 cut(s)	27, 235, 278, 385
PfoI	TCCNGGA	1 cut(s)	133
PkrI	GCNGC	4 cut(s)	784, 916, 919, 1057
PleI	GAGTC	3 cut(s)	526, 746, 811
PpsI	GAGTC	3 cut(s)	526, 746, 811
Ppu21I	YACGTR	1 cut(s)	473
PscI	ACATGT	1 cut(s)	226
PshAI	GACNNNNGTC	1 cut(s)	339
Psp1406I	AACGTT	1 cut(s)	519
Psp6I	CCWGG	2 cut(s)	133, 646
PspGI	CCWGG	2 cut(s)	133, 646
PstI	CTGCAG	2 cut(s)	384, 922
PstNI	CAGNNNCTG	2 cut(s)	248, 675
PsuI	RGATCY	3 cut(s)	672, 697, 830
RsaI	GTAC	2 cut(s)	471, 713
RsaNI	GTAC	2 cut(s)	470, 712
RseI	CAYNNNNRTG	1 cut(s)	1029
SapI	GCTCTTC	1 cut(s)	1161
SaqAI	TTAA	6 cut(s)	432, 486, 575, 708, 1130, 1139
SatI	GCNGC	4 cut(s)	783, 915, 918, 1056
Sau3AI	GATC	5 cut(s)	110, 296, 672, 697, 830
ScaI	AGTACT	1 cut(s)	713
SchI	GAGTC	3 cut(s)	526, 747, 812
ScrFI	CCNGG	2 cut(s)	135, 648
SduI	GDGCHC	1 cut(s)	505
SfaNI	GCATC	3 cut(s)	291, 554, 1067
SfcI	CTRYAG	3 cut(s)	240, 380, 918
SmiI	ATTTAAAT	1 cut(s)	1131
SmiMI	CAYNNNNRTG	1 cut(s)	1029
SmlI	CTYRAG	1 cut(s)	971
SmoI	CTYRAG	1 cut(s)	971
Sse9I	AATT	7 cut(s)	257, 433, 483, 722, 776, 930, 980
SsiI	CCGC	1 cut(s)	656
SspMI	CTAG	3 cut(s)	50, 537, 893
StyD4I	CCNGG	2 cut(s)	133, 646
StyI	CCWWGG	1 cut(s)	490
SwaI	ATTTAAAT	1 cut(s)	1131
TaaI	ACNGT	2 cut(s)	341, 564
TaiI	ACGT	3 cut(s)	475, 522, 1053
TaqI	TCGA	4 cut(s)	60, 109, 299, 716
TaqII	GACCGA	1 cut(s)	80
TasI	AATT	7 cut(s)	257, 433, 483, 722, 776, 930, 980
TatI	WGTACW	1 cut(s)	711
TfiI	GAWTC	4 cut(s)	27, 235, 278, 385
Tru1I	TTAA	6 cut(s)	432, 486, 575, 708, 1130, 1139
Tru9I	TTAA	6 cut(s)	432, 486, 575, 708, 1130, 1139
TscAI	CASTG	1 cut(s)	1068
TseI	GCWGC	4 cut(s)	782, 914, 917, 1055
TspDTI	ATGAA	9 cut(s)	95, 410, 512, 618, 626, 641, 861, 1047, 1164
TspGWI	ACGGA	1 cut(s)	406
TspRI	CASTG	1 cut(s)	1068
XapI	RAATTY	3 cut(s)	722, 776, 980
XceI	RCATGY	1 cut(s)	230
XmnI	GAANNNNTTC	2 cut(s)	722, 1155
XspI	CTAG	3 cut(s)	50, 537, 893
ZrmI	AGTACT	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.