RchiOBHm_Chr4g0421281

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0009250
Physical Location & Seq
Reverse (-)
46902116 .. 46906039
3924 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39094

Sequence Viewer

Length: 1188 bp
ATGCAAGTGCTCTCCAACAACACTCGCAGGCTCTCCAGAGTCCTCAAGTCTCCAATCTTCATCTTCTCCGAACGACTCGTCGCTCCCGACGCGCCACTCGCCGAATCTCCACGCGCTCGTCTCCAATGGCGGAAGCTCACCACTCTCTCTCCCCAATCCTCTGGCATTACTCGAGGTTGTTGTCTTTCGCCGACGGAGCAACCCTCGATGATGATGGCATTTAGGGCAGCCTTTTCATCTGAGGCGAGTACGGTTGAAGCTATTCCCACAGAGGCTGTGAAGGAGCTGTATGATAAAATGCTGGAATCTGTGAATGTTAAACGCTCGATGCCCCCTAATGCTTGGTTGTGGTCCTTGATTGAGAATTGCAAAAATCAGGATGATATTAAGCTTTTATTTGACATCTTGCAGAACCTGCGACGATTTAGACTGTCAAATCTACGCATCCATTCAAATTTTAATTGCAATCTTTGCCAAGAGGTTACCAAGGCATGCGCTCGCGTGGGGGCCCTCAACTTTGGAAAGAAGGGCTTGTGGAAACACAATGTGTACGGATTGACCCCTAGTATCGGATCTGCTCACCATTTACTGACATATGCTAAAGAGCACAATGATGTTAAACTTATGATGGATGTAATGACACTTTTGAAGGAGAATGACTTACCTTTGCAATCTGGTACAGCAGATATTGTTTTCAGCATTTGTTACAATACTGATAACTGGAAGTTGATGTCTAAGTACTCAAAGAGGTTTGTCGAGGCTGGAGTAAAGCTACGAAGATCTGCATTTGATGTCTGGATGGAATTCGCTGCTAAAATAGGAGATGTTGAATCCTTATGGGAAATTGAGAAGTTGAGATCTGAGTCTCAGAAGCAGCACACTGTTGTGAGTGGATTTTCATGTGCAAAGGGTTTACTATTAGAGCATAAGCCTGAGGAAGCTGCCGCTGTCATTCAAATACTACTAAACCAGAATTTAACTGATGCAAAGAAGTCCAAGATTGCGGTTGAACTTAAAAAGTTGGTTAGTGAGTGGCCATTAGAGGTTATCAAGCGCCAAAAAGAAGAGGATAGGAAGGCATTAGCTGTATCTTTAAACTCTGATATTCCGGTGATGCTATCAAAGACTGGATTAGAGGTGAGTGTAAATATGGAGGACCTAACCAGCAAAGAAGGCATTCTCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

395

Amino Acids

44.62

Weight (kDa)

9.0

Isoelectric Point (pI)

53.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 423
AccII CGCG 3 cut(s) 92, 114, 501
AciI CCGC 3 cut(s) 130, 945, 1004
AclWI GGATC 1 cut(s) 580
AcoI YGGCCR 1 cut(s) 1034
AcsI RAATTY 3 cut(s) 454, 803, 973
AdeI CACNNNGTG 1 cut(s) 547
AfaI GTAC 4 cut(s) 250, 551, 679, 740
AfiI CCNNNNNNNGG 1 cut(s) 569
AgsI TTSAA 6 cut(s) 257, 453, 649, 830, 956, 1010
AleI CACNNNNGTG 1 cut(s) 884
AluBI AGCT 7 cut(s) 136, 260, 286, 391, 772, 941, 1085
AluI AGCT 7 cut(s) 136, 260, 286, 391, 772, 941, 1085
Alw21I GWGCWC 2 cut(s) 12, 609
Alw26I GTCTC 3 cut(s) 54, 125, 870
AlwI GGATC 1 cut(s) 580
AlwNI CAGNNNCTG 2 cut(s) 275, 415
Ama87I CYCGRG 1 cut(s) 171
AoxI GGCC 2 cut(s) 507, 1034
ApaI GGGCCC 1 cut(s) 511
ApeKI GCWGC 4 cut(s) 227, 809, 874, 941
ApoI RAATTY 3 cut(s) 454, 803, 973
ArsI GACNNNNNNTTYG 2 cut(s) 63, 95
Asp700I GAANNNNTTC 2 cut(s) 261, 1176
AspLEI GCGC 4 cut(s) 94, 116, 497, 1056
AspS9I GGNCC 4 cut(s) 351, 507, 508, 1156
AsuHPI GGTGA 4 cut(s) 130, 572, 1123, 1150
AvaI CYCGRG 1 cut(s) 171
AvaII GGWCC 2 cut(s) 351, 1156
AxyI CCTNAGG 1 cut(s) 933
BaeGI GKGCMC 1 cut(s) 511
BalI TGGCCA 1 cut(s) 1036
BanII GRGCYC 1 cut(s) 511
Bbv12I GWGCWC 2 cut(s) 12, 609
BbvI GCAGC 4 cut(s) 239, 796, 886, 928
BccI CCATC 3 cut(s) 208, 622, 793
BcoDI GTCTC 3 cut(s) 54, 125, 870
BfaI CTAG 1 cut(s) 564
BfoI RGCGCY 1 cut(s) 1057
BfuAI ACCTGC 1 cut(s) 423
BglII AGATCT 2 cut(s) 779, 857
BisI GCNGC 5 cut(s) 228, 810, 875, 942, 945
BlsI GCNGC 5 cut(s) 229, 811, 876, 943, 946
BmcAI AGTACT 1 cut(s) 740
Bme18I GGWCC 2 cut(s) 351, 1156
BmeT110I CYCGRG 1 cut(s) 171
BmgT120I GGNCC 4 cut(s) 351, 507, 508, 1156
BmiI GGNNCC 2 cut(s) 508, 509
BmsI GCATC 4 cut(s) 318, 453, 973, 1104
BplI GAGNNNNNCTC 2 cut(s) 188, 220
BpmI CTGGAG 2 cut(s) 19, 783
BpuEI CTTGAG 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 486
BsaWI WCCGGW 1 cut(s) 1108
BsaXI ACNNNNNCTCC 2 cut(s) 133, 163
Bsc4I CCNNNNNNNGG 1 cut(s) 569
Bse1I ACTGG 2 cut(s) 725, 1132
Bse21I CCTNAGG 1 cut(s) 933
BseDI CCNNGG 1 cut(s) 486
BseGI GGATG 4 cut(s) 385, 444, 637, 804
BseLI CCNNNNNNNGG 1 cut(s) 569
BseMII CTCAG 4 cut(s) 231, 852, 881, 924
BseNI ACTGG 2 cut(s) 725, 1132
BseSI GKGCMC 1 cut(s) 511
BseXI GCAGC 4 cut(s) 239, 796, 886, 928
Bsh1236I CGCG 3 cut(s) 92, 114, 501
BshFI GGCC 2 cut(s) 509, 1036
BsiHKAI GWGCWC 2 cut(s) 12, 609
BsiHKCI CYCGRG 1 cut(s) 171
BsiSI CCGG 1 cut(s) 1109
BslI CCNNNNNNNGG 1 cut(s) 569
BsmAI GTCTC 3 cut(s) 54, 125, 870
BsmBI CGTCTC 1 cut(s) 125
BsmI GAATGC 1 cut(s) 1176
BsnI GGCC 2 cut(s) 509, 1036
BsoBI CYCGRG 1 cut(s) 171
Bsp120I GGGCCC 1 cut(s) 507
Bsp1286I GDGCHC 3 cut(s) 12, 511, 609
Bsp143I GATC 3 cut(s) 572, 779, 857
BspACI CCGC 3 cut(s) 130, 945, 1004
BspANI GGCC 2 cut(s) 509, 1036
BspCNI CTCAG 4 cut(s) 232, 853, 880, 925
BspFNI CGCG 3 cut(s) 92, 114, 501
BspLI GGNNCC 2 cut(s) 508, 509
BspMI ACCTGC 1 cut(s) 423
BspPI GGATC 1 cut(s) 580
BsrI ACTGG 2 cut(s) 725, 1132
BssECI CCNNGG 1 cut(s) 486
BssMI GATC 3 cut(s) 572, 779, 857
BssT1I CCWWGG 1 cut(s) 486
Bst4CI ACNGT 3 cut(s) 253, 432, 883
Bst6I CTCTTC 1 cut(s) 1059
BstAPI GCANNNNNTGC 2 cut(s) 415, 471
BstC8I GCNNGC 3 cut(s) 29, 493, 499
BstDEI CTNAG 5 cut(s) 240, 735, 861, 867, 933
BstEII GGTNACC 1 cut(s) 481
BstF5I GGATG 4 cut(s) 385, 444, 637, 804
BstFNI CGCG 3 cut(s) 92, 114, 501
BstH2I RGCGCY 1 cut(s) 1057
BstHHI GCGC 4 cut(s) 94, 116, 497, 1056
BstKTI GATC 3 cut(s) 575, 782, 860
BstMAI GTCTC 3 cut(s) 54, 125, 870
BstMBI GATC 3 cut(s) 572, 779, 857
BstMWI GCNNNNNNNGC 7 cut(s) 89, 98, 196, 224, 415, 471, 1173
BstNSI RCATGY 1 cut(s) 495
BstPI GGTNACC 1 cut(s) 481
BstSLI GKGCMC 1 cut(s) 511
BstUI CGCG 3 cut(s) 92, 114, 501
BstV1I GCAGC 4 cut(s) 239, 796, 886, 928
BstX2I RGATCY 3 cut(s) 572, 779, 857
BstXI CCANNNNNNTGG 1 cut(s) 161
BstYI RGATCY 3 cut(s) 572, 779, 857
Bsu36I CCTNAGG 1 cut(s) 933
BsuRI GGCC 2 cut(s) 509, 1036
BtsCI GGATG 4 cut(s) 385, 444, 637, 804
BtsIMutI CAGTG 1 cut(s) 879
BveI ACCTGC 1 cut(s) 423
Cac8I GCNNGC 3 cut(s) 29, 493, 499
CaiI CAGNNNCTG 2 cut(s) 275, 415
CfoI GCGC 4 cut(s) 94, 116, 497, 1056
Cfr13I GGNCC 4 cut(s) 351, 507, 508, 1156
CseI GACGC 1 cut(s) 98
Csp6I GTAC 4 cut(s) 249, 550, 678, 739
CviAII CATG 2 cut(s) 492, 900
CviQI GTAC 4 cut(s) 249, 550, 678, 739
DdeI CTNAG 5 cut(s) 240, 735, 861, 867, 933
DpnI GATC 3 cut(s) 574, 781, 859
DpnII GATC 3 cut(s) 572, 779, 857
DraI TTTAAA 1 cut(s) 1095
DraIII CACNNNGTG 1 cut(s) 547
EaeI YGGCCR 1 cut(s) 1034
Eam1104I CTCTTC 1 cut(s) 1059
EarI CTCTTC 1 cut(s) 1059
EciI GGCGGA 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 486
Eco24I GRGCYC 1 cut(s) 511
Eco47I GGWCC 2 cut(s) 351, 1156
Eco81I CCTNAGG 1 cut(s) 933
Eco88I CYCGRG 1 cut(s) 171
Eco91I GGTNACC 1 cut(s) 481
EcoO109I RGGNCCY 3 cut(s) 507, 508, 1156
EcoO65I GGTNACC 1 cut(s) 481
EcoRI GAATTC 1 cut(s) 803
EcoT14I CCWWGG 1 cut(s) 486
EcoT38I GRGCYC 1 cut(s) 511
ErhI CCWWGG 1 cut(s) 486
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 2 cut(s) 495, 903
FaiI YATR 9 cut(s) 291, 493, 595, 597, 626, 838, 901, 927, 1151
FalI AAGNNNNNCTT 2 cut(s) 515, 547
FatI CATG 2 cut(s) 491, 899
FauNDI CATATG 1 cut(s) 595
Fnu4HI GCNGC 5 cut(s) 228, 810, 875, 942, 945
FokI GGATG 4 cut(s) 392, 431, 644, 811
FriOI GRGCYC 1 cut(s) 511
Fsp4HI GCNGC 5 cut(s) 228, 810, 875, 942, 945
FspBI CTAG 1 cut(s) 564
GlaI GCGC 4 cut(s) 93, 115, 496, 1055
GluI GCNGC 5 cut(s) 228, 810, 875, 942, 945
GsuI CTGGAG 2 cut(s) 19, 783
HaeII RGCGCY 1 cut(s) 1057
HaeIII GGCC 2 cut(s) 509, 1036
HapII CCGG 1 cut(s) 1109
HgaI GACGC 1 cut(s) 98
HhaI GCGC 4 cut(s) 94, 116, 497, 1056
Hin1II CATG 2 cut(s) 495, 903
Hin6I GCGC 4 cut(s) 92, 114, 495, 1054
HinP1I GCGC 4 cut(s) 92, 114, 495, 1054
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 6 cut(s) 39, 75, 104, 305, 830, 863
HpaII CCGG 1 cut(s) 1109
HphI GGTGA 4 cut(s) 130, 572, 1123, 1150
Hpy166II GTNNAC 2 cut(s) 550, 914
Hpy188I TCNGA 6 cut(s) 70, 241, 572, 862, 870, 1102
Hpy188III TCNNGA 4 cut(s) 36, 86, 377, 796
Hpy8I GTNNAC 2 cut(s) 550, 914
Hpy99I CGWCG 4 cut(s) 83, 92, 196, 423
HpyAV CCTTC 5 cut(s) 274, 520, 643, 1069, 1166
HpyCH4III ACNGT 3 cut(s) 253, 432, 883
HpyCH4V TGCA 8 cut(s) 4, 369, 409, 465, 670, 785, 905, 986
HpyF10VI GCNNNNNNNGC 7 cut(s) 89, 98, 196, 224, 415, 471, 1173
HpyF3I CTNAG 5 cut(s) 240, 735, 861, 867, 933
Hsp92II CATG 2 cut(s) 495, 903
HspAI GCGC 4 cut(s) 92, 114, 495, 1054
Kzo9I GATC 3 cut(s) 572, 779, 857
LmnI GCTCC 3 cut(s) 88, 196, 283
Lsp1109I GCAGC 4 cut(s) 239, 796, 886, 928
LweI GCATC 4 cut(s) 318, 453, 973, 1104
MaeI CTAG 1 cut(s) 564
MaeIII GTNAC 2 cut(s) 481, 704
MalI GATC 3 cut(s) 574, 781, 859
MboI GATC 3 cut(s) 572, 779, 857
MboII GAAGA 4 cut(s) 49, 55, 789, 1076
MflI RGATCY 3 cut(s) 572, 779, 857
MhlI GDGCHC 3 cut(s) 12, 511, 609
MlsI TGGCCA 1 cut(s) 1036
MluCI AATT 6 cut(s) 364, 454, 460, 803, 843, 973
MluNI TGGCCA 1 cut(s) 1036
MlyI GAGTC 3 cut(s) 48, 69, 872
MmeI TCCRAC 1 cut(s) 39
Mox20I TGGCCA 1 cut(s) 1036
MroXI GAANNNNTTC 2 cut(s) 261, 1176
MscI TGGCCA 1 cut(s) 1036
MseI TTAA 7 cut(s) 318, 387, 459, 618, 977, 1014, 1094
MslI CAYNNNNRTG 2 cut(s) 612, 884
Msp20I TGGCCA 1 cut(s) 1036
MspA1I CMGCKG 1 cut(s) 947
MspI CCGG 1 cut(s) 1109
Mva1269I GAATGC 1 cut(s) 1176
MvnI CGCG 3 cut(s) 92, 114, 501
MwoI GCNNNNNNNGC 7 cut(s) 89, 98, 196, 224, 415, 471, 1173
NdeI CATATG 1 cut(s) 595
NdeII GATC 3 cut(s) 572, 779, 857
NlaIII CATG 2 cut(s) 495, 903
NlaIV GGNNCC 2 cut(s) 508, 509
NspI RCATGY 1 cut(s) 495
OliI CACNNNNGTG 1 cut(s) 884
PaeI GCATGC 1 cut(s) 495
PaeR7I CTCGAG 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PctI GAATGC 1 cut(s) 1176
PdmI GAANNNNTTC 2 cut(s) 261, 1176
PfeI GAWTC 3 cut(s) 104, 305, 830
PkrI GCNGC 5 cut(s) 229, 811, 876, 943, 946
PleI GAGTC 3 cut(s) 47, 69, 871
PpsI GAGTC 3 cut(s) 47, 69, 871
PpuMI RGGWCCY 1 cut(s) 1156
Psp5II RGGWCCY 1 cut(s) 1156
PspEI GGTNACC 1 cut(s) 481
PspN4I GGNNCC 2 cut(s) 508, 509
PspOMI GGGCCC 1 cut(s) 507
PspPI GGNCC 4 cut(s) 351, 507, 508, 1156
PspPPI RGGWCCY 1 cut(s) 1156
PspXI VCTCGAGB 1 cut(s) 171
PstNI CAGNNNCTG 2 cut(s) 275, 415
PsuI RGATCY 3 cut(s) 572, 779, 857
RsaI GTAC 4 cut(s) 250, 551, 679, 740
RsaNI GTAC 4 cut(s) 249, 550, 678, 739
RseI CAYNNNNRTG 2 cut(s) 612, 884
SaqAI TTAA 7 cut(s) 318, 387, 459, 618, 977, 1014, 1094
SatI GCNGC 5 cut(s) 228, 810, 875, 942, 945
Sau3AI GATC 3 cut(s) 572, 779, 857
Sau96I GGNCC 4 cut(s) 351, 507, 508, 1156
ScaI AGTACT 1 cut(s) 740
SchI GAGTC 3 cut(s) 48, 69, 872
SduI GDGCHC 3 cut(s) 12, 511, 609
SfaNI GCATC 4 cut(s) 318, 453, 973, 1104
Sfr274I CTCGAG 1 cut(s) 171
SinI GGWCC 2 cut(s) 351, 1156
SlaI CTCGAG 1 cut(s) 171
SmiMI CAYNNNNRTG 2 cut(s) 612, 884
SmlI CTYRAG 2 cut(s) 44, 171
SmoI CTYRAG 2 cut(s) 44, 171
SphI GCATGC 1 cut(s) 495
Sse9I AATT 6 cut(s) 364, 454, 460, 803, 843, 973
SsiI CCGC 3 cut(s) 130, 945, 1004
SspMI CTAG 1 cut(s) 564
StyI CCWWGG 1 cut(s) 486
TaaI ACNGT 3 cut(s) 253, 432, 883
TaqI TCGA 4 cut(s) 172, 206, 326, 756
TasI AATT 6 cut(s) 364, 454, 460, 803, 843, 973
TatI WGTACW 1 cut(s) 738
TauI GCSGC 1 cut(s) 947
TfiI GAWTC 3 cut(s) 104, 305, 830
Tru1I TTAA 7 cut(s) 318, 387, 459, 618, 977, 1014, 1094
Tru9I TTAA 7 cut(s) 318, 387, 459, 618, 977, 1014, 1094
TscAI CASTG 1 cut(s) 886
TseI GCWGC 4 cut(s) 227, 809, 874, 941
TspDTI ATGAA 3 cut(s) 49, 225, 888
TspGWI ACGGA 2 cut(s) 209, 567
TspRI CASTG 1 cut(s) 886
VpaK11BI GGWCC 2 cut(s) 351, 1156
XapI RAATTY 3 cut(s) 454, 803, 973
XceI RCATGY 1 cut(s) 495
XhoI CTCGAG 1 cut(s) 171
XmnI GAANNNNTTC 2 cut(s) 261, 1176
XspI CTAG 1 cut(s) 564
ZrmI AGTACT 1 cut(s) 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.