Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0009250

Physical Location & Seq

Genomic Coordinates Reverse (-)

53315889 .. 53320190

Gene Structure 4302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG230400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGCAAGTGCTCTCCAACACTCGCAGGCTCTCCAGAGTCCTCAAGTCTCCAATCTTCATCTTCTCCGAACGACTCGTCGCTCCCGACGCGCCACTCGCCGAATCTCCACGCGCTCGTCTCCAATGGCGGAAGCTCACCACTCTCTCTCCCCAACCCTCTGGCATTACTCGAGGTTGTTGTCTTTCGCCGACGGAGCAACACTCGATGATGACATTTAGGGCAGCCTTTTCATCTGAGGCGAGTACGGTTGAAGCTATTCCCACAGAGGCTGTGAAGGATCTGTATGATAAAATACTGGAATCTGTGAATGTTAAACGCTCGATGCCCCCTAATGCTTGGTTGTGGTCCTTGATTGAGAATTGCAAAAATCAGGATGATATTAAGCTTTTATTTGACATCTTGCAGAACCTGCGACGATTTAGACTGTCAAATCTACGCATCCATTCAAATTTTAATTGCAATCTCTGCCAAGAGGTTACCAAGGCATGCGCTCGCGTGGGGGCCCTCAACTTTGGAAAGAAGGGCTTGTGGAAACACAATGTGTATGGATTGACCCCTAGTATCGGATCTGCTCACCATTTACTGACATATGCTAAAGAGCACAATGATGTTAAACTTATGATGGATGTAATGACACTTTTGAAGGAGAATGACTTACCTTTGCAATCTGGTACAGCAGATATTGTTTTCAGCATTTGTTACAATACTGATAACTGGAAGTTGATGTCTAAGTACTCAAAGAGGTTTGTCGAGGCTGGAGTAAAGCTACGAAGATCTGCATTTGATGTCTGGATGGAATTTGCTGCTAAAATAGGAGATGTTGAATCCTTATGGGAAATTGAGAAGTTGAGATCTGAGTCTCAGAAGCAGCACACTGTTGTGAGTGGATTTTCATGTGCAAAGGTAATAAATCATCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

306

Amino Acids

34.82

Weight (kDa)

9.31

Isoelectric Point (pI)

57.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21465 AT3G21465 AT4G15640 AT4G15640
fragaria_vesca	FvH4_4g17340 FvH4_4g17340
malus_domestica	MD13G1173000.v1.1 MD16G1174400.v1.1
prunus_persica	Prupe.1G141100_v2.0.a1
pyrus_communis	pycom13g14850 pycom16g14600
rosa_chinensis	RchiOBHm_Chr4g0421281 RchiOBHm_Chr4g0421901
rosa_laevigata	RLG00000007701
rosa_multiflora	Rmu_sc0007721.1_g000005
rosa_roxburghii	Rroxscaffold_5G00363510
rosa_rugosa	Rorug04G0169500
rosa_samantha	Rh4AG230400 Rh4BG233400 Rh4CG244600 Rh4DG229100
rosa_wichuraiana	Rw4G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	417
AccII	CGCG	3 cut(s)	89, 111, 495
AciI	CCGC	1 cut(s)	127
AclWI	GGATC	2 cut(s)	285, 574
AcsI	RAATTY	2 cut(s)	448, 797
AdeI	CACNNNGTG	1 cut(s)	541
AfaI	GTAC	3 cut(s)	244, 673, 734
AfiI	CCNNNNNNNGG	1 cut(s)	563
AgsI	TTSAA	4 cut(s)	251, 447, 643, 824
AleI	CACNNNNGTG	1 cut(s)	878
AluBI	AGCT	4 cut(s)	133, 254, 385, 766
AluI	AGCT	4 cut(s)	133, 254, 385, 766
Alw21I	GWGCWC	2 cut(s)	12, 603
Alw26I	GTCTC	3 cut(s)	51, 122, 864
AlwI	GGATC	2 cut(s)	285, 574
AlwNI	CAGNNNCTG	2 cut(s)	269, 409
Ama87I	CYCGRG	1 cut(s)	168
AoxI	GGCC	1 cut(s)	501
ApaI	GGGCCC	1 cut(s)	505
ApeKI	GCWGC	3 cut(s)	221, 803, 868
ApoI	RAATTY	2 cut(s)	448, 797
ArsI	GACNNNNNNTTYG	2 cut(s)	60, 92
Asp700I	GAANNNNTTC	1 cut(s)	255
AspLEI	GCGC	3 cut(s)	91, 113, 491
AspS9I	GGNCC	3 cut(s)	345, 501, 502
AsuHPI	GGTGA	2 cut(s)	127, 566
AvaI	CYCGRG	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	345
BaeGI	GKGCMC	1 cut(s)	505
BanII	GRGCYC	1 cut(s)	505
Bbv12I	GWGCWC	2 cut(s)	12, 603
BbvI	GCAGC	3 cut(s)	233, 790, 880
BccI	CCATC	2 cut(s)	616, 787
BcoDI	GTCTC	3 cut(s)	51, 122, 864
BfaI	CTAG	1 cut(s)	558
BfmI	CTRYAG	1 cut(s)	917
BfuAI	ACCTGC	1 cut(s)	417
BglII	AGATCT	2 cut(s)	773, 851
BisI	GCNGC	3 cut(s)	222, 804, 869
BlsI	GCNGC	3 cut(s)	223, 805, 870
BmcAI	AGTACT	1 cut(s)	734
Bme18I	GGWCC	1 cut(s)	345
BmeT110I	CYCGRG	1 cut(s)	168
BmgT120I	GGNCC	3 cut(s)	345, 501, 502
BmiI	GGNNCC	2 cut(s)	502, 503
BmsI	GCATC	2 cut(s)	312, 447
BplI	GAGNNNNNCTC	2 cut(s)	185, 217
BpmI	CTGGAG	2 cut(s)	16, 777
BpuEI	CTTGAG	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	480
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	1 cut(s)	563
Bse1I	ACTGG	2 cut(s)	300, 719
BseDI	CCNNGG	1 cut(s)	480
BseGI	GGATG	4 cut(s)	379, 438, 631, 798
BseLI	CCNNNNNNNGG	1 cut(s)	563
BseMII	CTCAG	3 cut(s)	225, 846, 875
BseNI	ACTGG	2 cut(s)	300, 719
BseSI	GKGCMC	1 cut(s)	505
BseXI	GCAGC	3 cut(s)	233, 790, 880
Bsh1236I	CGCG	3 cut(s)	89, 111, 495
BshFI	GGCC	1 cut(s)	503
BsiHKAI	GWGCWC	2 cut(s)	12, 603
BsiHKCI	CYCGRG	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	563
BsmAI	GTCTC	3 cut(s)	51, 122, 864
BsmBI	CGTCTC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	503
BsoBI	CYCGRG	1 cut(s)	168
Bsp120I	GGGCCC	1 cut(s)	501
Bsp1286I	GDGCHC	3 cut(s)	12, 505, 603
Bsp143I	GATC	4 cut(s)	277, 566, 773, 851
BspACI	CCGC	1 cut(s)	127
BspANI	GGCC	1 cut(s)	503
BspCNI	CTCAG	3 cut(s)	226, 847, 874
BspFNI	CGCG	3 cut(s)	89, 111, 495
BspLI	GGNNCC	2 cut(s)	502, 503
BspMI	ACCTGC	1 cut(s)	417
BspPI	GGATC	2 cut(s)	285, 574
BsrI	ACTGG	2 cut(s)	300, 719
BssECI	CCNNGG	1 cut(s)	480
BssMI	GATC	4 cut(s)	277, 566, 773, 851
BssT1I	CCWWGG	1 cut(s)	480
Bst4CI	ACNGT	3 cut(s)	247, 426, 877
BstAPI	GCANNNNNTGC	2 cut(s)	409, 465
BstC8I	GCNNGC	3 cut(s)	26, 487, 493
BstDEI	CTNAG	4 cut(s)	234, 729, 855, 861
BstEII	GGTNACC	1 cut(s)	475
BstF5I	GGATG	4 cut(s)	379, 438, 631, 798
BstFNI	CGCG	3 cut(s)	89, 111, 495
BstHHI	GCGC	3 cut(s)	91, 113, 491
BstKTI	GATC	4 cut(s)	280, 569, 776, 854
BstMAI	GTCTC	3 cut(s)	51, 122, 864
BstMBI	GATC	4 cut(s)	277, 566, 773, 851
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 95, 193, 409, 465
BstNSI	RCATGY	1 cut(s)	489
BstPI	GGTNACC	1 cut(s)	475
BstSFI	CTRYAG	1 cut(s)	917
BstSLI	GKGCMC	1 cut(s)	505
BstUI	CGCG	3 cut(s)	89, 111, 495
BstV1I	GCAGC	3 cut(s)	233, 790, 880
BstX2I	RGATCY	4 cut(s)	277, 566, 773, 851
BstXI	CCANNNNNNTGG	1 cut(s)	158
BstYI	RGATCY	4 cut(s)	277, 566, 773, 851
BsuRI	GGCC	1 cut(s)	503
BtsCI	GGATG	4 cut(s)	379, 438, 631, 798
BtsIMutI	CAGTG	1 cut(s)	873
BveI	ACCTGC	1 cut(s)	417
Cac8I	GCNNGC	3 cut(s)	26, 487, 493
CaiI	CAGNNNCTG	2 cut(s)	269, 409
CfoI	GCGC	3 cut(s)	91, 113, 491
Cfr13I	GGNCC	3 cut(s)	345, 501, 502
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	3 cut(s)	243, 672, 733
CviAII	CATG	2 cut(s)	486, 894
CviQI	GTAC	3 cut(s)	243, 672, 733
DdeI	CTNAG	4 cut(s)	234, 729, 855, 861
DpnI	GATC	4 cut(s)	279, 568, 775, 853
DpnII	GATC	4 cut(s)	277, 566, 773, 851
DraIII	CACNNNGTG	1 cut(s)	541
EciI	GGCGGA	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	480
Eco24I	GRGCYC	1 cut(s)	505
Eco47I	GGWCC	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	168
Eco91I	GGTNACC	1 cut(s)	475
EcoO109I	RGGNCCY	2 cut(s)	501, 502
EcoO65I	GGTNACC	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	480
EcoT38I	GRGCYC	1 cut(s)	505
ErhI	CCWWGG	1 cut(s)	480
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	2 cut(s)	489, 897
FaiI	YATR	9 cut(s)	285, 487, 546, 589, 591, 620, 832, 895, 919
FalI	AAGNNNNNCTT	2 cut(s)	509, 541
FatI	CATG	2 cut(s)	485, 893
FauNDI	CATATG	1 cut(s)	589
Fnu4HI	GCNGC	3 cut(s)	222, 804, 869
FokI	GGATG	4 cut(s)	386, 425, 638, 805
FriOI	GRGCYC	1 cut(s)	505
Fsp4HI	GCNGC	3 cut(s)	222, 804, 869
FspBI	CTAG	1 cut(s)	558
GlaI	GCGC	3 cut(s)	90, 112, 490
GluI	GCNGC	3 cut(s)	222, 804, 869
GsuI	CTGGAG	2 cut(s)	16, 777
HaeIII	GGCC	1 cut(s)	503
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	3 cut(s)	91, 113, 491
Hin1II	CATG	2 cut(s)	489, 897
Hin6I	GCGC	3 cut(s)	89, 111, 489
HinP1I	GCGC	3 cut(s)	89, 111, 489
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	6 cut(s)	36, 72, 101, 299, 824, 857
HphI	GGTGA	2 cut(s)	127, 566
Hpy188I	TCNGA	5 cut(s)	67, 235, 566, 856, 864
Hpy188III	TCNNGA	4 cut(s)	33, 83, 371, 790
Hpy99I	CGWCG	4 cut(s)	80, 89, 193, 417
HpyAV	CCTTC	3 cut(s)	268, 514, 637
HpyCH4III	ACNGT	3 cut(s)	247, 426, 877
HpyCH4V	TGCA	7 cut(s)	4, 363, 403, 459, 664, 779, 899
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 95, 193, 409, 465
HpyF3I	CTNAG	4 cut(s)	234, 729, 855, 861
Hsp92II	CATG	2 cut(s)	489, 897
HspAI	GCGC	3 cut(s)	89, 111, 489
Kzo9I	GATC	4 cut(s)	277, 566, 773, 851
LmnI	GCTCC	2 cut(s)	85, 193
Lsp1109I	GCAGC	3 cut(s)	233, 790, 880
LweI	GCATC	2 cut(s)	312, 447
MaeI	CTAG	1 cut(s)	558
MaeIII	GTNAC	2 cut(s)	475, 698
MalI	GATC	4 cut(s)	279, 568, 775, 853
MboI	GATC	4 cut(s)	277, 566, 773, 851
MboII	GAAGA	3 cut(s)	46, 52, 783
MflI	RGATCY	4 cut(s)	277, 566, 773, 851
MhlI	GDGCHC	3 cut(s)	12, 505, 603
MluCI	AATT	5 cut(s)	358, 448, 454, 797, 837
MlyI	GAGTC	3 cut(s)	45, 66, 866
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	9 cut(s)	50, 164, 166, 229, 259, 466, 515, 735, 745
MroXI	GAANNNNTTC	1 cut(s)	255
MseI	TTAA	4 cut(s)	312, 381, 453, 612
MslI	CAYNNNNRTG	2 cut(s)	606, 878
MvnI	CGCG	3 cut(s)	89, 111, 495
MwoI	GCNNNNNNNGC	5 cut(s)	86, 95, 193, 409, 465
NdeI	CATATG	1 cut(s)	589
NdeII	GATC	4 cut(s)	277, 566, 773, 851
NlaIII	CATG	2 cut(s)	489, 897
NlaIV	GGNNCC	2 cut(s)	502, 503
NspI	RCATGY	1 cut(s)	489
OliI	CACNNNNGTG	1 cut(s)	878
PaeI	GCATGC	1 cut(s)	489
PaeR7I	CTCGAG	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	3 cut(s)	101, 299, 824
PkrI	GCNGC	3 cut(s)	223, 805, 870
PleI	GAGTC	3 cut(s)	44, 66, 865
PpsI	GAGTC	3 cut(s)	44, 66, 865
PspEI	GGTNACC	1 cut(s)	475
PspN4I	GGNNCC	2 cut(s)	502, 503
PspOMI	GGGCCC	1 cut(s)	501
PspPI	GGNCC	3 cut(s)	345, 501, 502
PspXI	VCTCGAGB	1 cut(s)	168
PstNI	CAGNNNCTG	2 cut(s)	269, 409
PsuI	RGATCY	4 cut(s)	277, 566, 773, 851
RsaI	GTAC	3 cut(s)	244, 673, 734
RsaNI	GTAC	3 cut(s)	243, 672, 733
RseI	CAYNNNNRTG	2 cut(s)	606, 878
SaqAI	TTAA	4 cut(s)	312, 381, 453, 612
SatI	GCNGC	3 cut(s)	222, 804, 869
Sau3AI	GATC	4 cut(s)	277, 566, 773, 851
Sau96I	GGNCC	3 cut(s)	345, 501, 502
ScaI	AGTACT	1 cut(s)	734
SchI	GAGTC	3 cut(s)	45, 66, 866
SduI	GDGCHC	3 cut(s)	12, 505, 603
SfaNI	GCATC	2 cut(s)	312, 447
SfcI	CTRYAG	1 cut(s)	917
Sfr274I	CTCGAG	1 cut(s)	168
SinI	GGWCC	1 cut(s)	345
SlaI	CTCGAG	1 cut(s)	168
SmiMI	CAYNNNNRTG	2 cut(s)	606, 878
SmlI	CTYRAG	2 cut(s)	41, 168
SmoI	CTYRAG	2 cut(s)	41, 168
SphI	GCATGC	1 cut(s)	489
Sse9I	AATT	5 cut(s)	358, 448, 454, 797, 837
SsiI	CCGC	1 cut(s)	127
SspMI	CTAG	1 cut(s)	558
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	3 cut(s)	247, 426, 877
TaqI	TCGA	4 cut(s)	169, 203, 320, 750
TasI	AATT	5 cut(s)	358, 448, 454, 797, 837
TatI	WGTACW	1 cut(s)	732
TfiI	GAWTC	3 cut(s)	101, 299, 824
Tru1I	TTAA	4 cut(s)	312, 381, 453, 612
Tru9I	TTAA	4 cut(s)	312, 381, 453, 612
TscAI	CASTG	1 cut(s)	880
TseI	GCWGC	3 cut(s)	221, 803, 868
TspDTI	ATGAA	3 cut(s)	46, 219, 882
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	1 cut(s)	880
VpaK11BI	GGWCC	1 cut(s)	345
XapI	RAATTY	2 cut(s)	448, 797
XceI	RCATGY	1 cut(s)	489
XhoI	CTCGAG	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	1 cut(s)	558
ZrmI	AGTACT	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.