Rorug04G0169500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0009250
Physical Location & Seq
Reverse (-)
29848097 .. 29848468
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0169500.1

Sequence Viewer

Length: 372 bp
ATGATTCAGTTTGCATTAGAGAATGGTTGTGATGTTAATAGAATATGTTGCCCTTGTTTGAATTGTGAGCACATTAACTATCATAAGGCTAGGGTTGTGAAAGATCATTTAGTCGAGTTTGGCATAGATAGAACATACAAAAAATGGATTAACCACGGGGAAAATTCAGAGAATGAAGGGTATTCAGAAACTGTAGAGATGGAGCCTAGTCACATAGGTATAGGGGGGCACGATGATGAGGAGCTTTCAAAAGGCTCTGATGAGTTTTTGAGGTTTGACGATGATGGTGATAAACCTCTTTACCCTGGTTGTACCCATTTTACAAAGTTGAATGGACTTGTTAAAACATATAATCTGAAAGCGCACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.11

Weight (kDa)

5.25

Isoelectric Point (pI)

30.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 2 - 54 8.4e-13 Transposase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 163
AfaI GTAC 1 cut(s) 313
AgsI TTSAA 3 cut(s) 61, 249, 331
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 1 cut(s) 244
AluI AGCT 1 cut(s) 244
Alw21I GWGCWC 1 cut(s) 72
AlwNI CAGNNNCTG 1 cut(s) 191
ApoI RAATTY 1 cut(s) 163
AspLEI GCGC 1 cut(s) 364
AsuHPI GGTGA 1 cut(s) 299
BaeGI GKGCMC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 72
BccI CCATC 2 cut(s) 193, 278
BciT130I CCWGG 1 cut(s) 306
BfaI CTAG 3 cut(s) 90, 207, 370
BfmI CTRYAG 1 cut(s) 192
Bme1390I CCNGG 1 cut(s) 306
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 306
BsaJI CCNNGG 2 cut(s) 154, 304
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 2 cut(s) 154, 304
BseRI GAGGAG 1 cut(s) 254
BseSI GKGCMC 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 72
Bsp1286I GDGCHC 2 cut(s) 72, 231
Bsp143I GATC 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 204
BssECI CCNNGG 2 cut(s) 154, 304
BssMI GATC 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 193
BstDSI CCRYGG 1 cut(s) 154
BstHHI GCGC 1 cut(s) 364
BstKTI GATC 1 cut(s) 106
BstMBI GATC 1 cut(s) 103
BstNI CCWGG 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 304
BstSFI CTRYAG 1 cut(s) 192
BstSLI GKGCMC 1 cut(s) 231
BtgI CCRYGG 1 cut(s) 154
CaiI CAGNNNCTG 1 cut(s) 191
CfoI GCGC 1 cut(s) 364
Csp6I GTAC 1 cut(s) 312
CviJI RGCY 4 cut(s) 89, 205, 244, 255
CviKI_1 RGCY 4 cut(s) 89, 205, 244, 255
CviQI GTAC 1 cut(s) 312
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 304
FaiI YATR 8 cut(s) 46, 84, 125, 136, 215, 221, 349, 351
FspBI CTAG 3 cut(s) 90, 207, 370
GlaI GCGC 1 cut(s) 363
HhaI GCGC 1 cut(s) 364
Hin6I GCGC 1 cut(s) 362
HinP1I GCGC 1 cut(s) 362
HinfI GANTC 1 cut(s) 4
HphI GGTGA 1 cut(s) 299
Hpy188I TCNGA 4 cut(s) 169, 187, 259, 357
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4V TGCA 1 cut(s) 14
HspAI GCGC 1 cut(s) 362
Kzo9I GATC 1 cut(s) 103
LmnI GCTCC 2 cut(s) 202, 241
LpnPI CCDG 2 cut(s) 291, 318
MaeI CTAG 3 cut(s) 90, 207, 370
MaeIII GTNAC 1 cut(s) 209
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MhlI GDGCHC 2 cut(s) 72, 231
MluCI AATT 2 cut(s) 61, 163
MnlI CCTC 3 cut(s) 232, 264, 306
MseI TTAA 4 cut(s) 36, 75, 150, 342
MslI CAYNNNNRTG 1 cut(s) 234
MspR9I CCNGG 1 cut(s) 306
MvaI CCWGG 1 cut(s) 306
NdeII GATC 1 cut(s) 103
NlaIV GGNNCC 1 cut(s) 204
NmuCI GTSAC 1 cut(s) 209
PfeI GAWTC 1 cut(s) 4
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 1 cut(s) 204
PstNI CAGNNNCTG 1 cut(s) 191
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
RseI CAYNNNNRTG 1 cut(s) 234
SaqAI TTAA 4 cut(s) 36, 75, 150, 342
Sau3AI GATC 1 cut(s) 103
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 2 cut(s) 72, 231
SetI ASST 4 cut(s) 220, 246, 275, 298
SfcI CTRYAG 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 234
Sse9I AATT 2 cut(s) 61, 163
SspMI CTAG 3 cut(s) 90, 207, 370
StyD4I CCNGG 1 cut(s) 304
TaaI ACNGT 1 cut(s) 193
TaqI TCGA 1 cut(s) 114
TasI AATT 2 cut(s) 61, 163
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 4 cut(s) 36, 75, 150, 342
Tru9I TTAA 4 cut(s) 36, 75, 150, 342
TseFI GTSAC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 1 cut(s) 189
XapI RAATTY 1 cut(s) 163
XspI CTAG 3 cut(s) 90, 207, 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.