Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009250

Physical Location & Seq

Genomic Coordinates Forward (+)

14199598 .. 14203449

Gene Structure 3852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1173000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGCAAGTGATCTCCAACACTCGCAGGCTCTCCAGAGCTTTCAAATCTCCCATTTGTATCAAATCCGCCGACCAATTTCTCTCTCCCGATGCCCGAGTCGTCGAAGCTCCTCTCACTTCTCTCCAATGGCGGAACCTCGGCGCCGGCTCTTCCCAAACGGCCTTGTTCTCTGGCAGTACTCGTGGTCATCTTTTGCCGATGGAACAACATTCAACTTGTGCAGTGATGACATTGAGAGCGCCCTTTTCTTCTCAAGCGAGTACCATCGAAGGTGGTTCCACAGAGGCTGTGAAGGAGCTGTATGATAAAATGTTGCAGTCTGTTAATATAAAACGATCGATGCCCCCTAATGCTTGGTTATGGTCATTGATTGAAAATTGCAAAAAGGAAGGAGATATTAAGCTTCTATTTGACATCTTGCAGAACCTTCGAAGATTTAGACTGTCAAATCTTCGCATCCATTCCGATTTTAATTGCAATCTTTGCCGAGAGGTTACTAAGGCGTGTGTTCATGTGGGAGCTCTTGACTATGGAAAGAAGGCCTTGTGGAAACATAACGTGTATGGATTGGCTCCTAGCATCGGATCTGCGCACCATTTACTGTTGTATGCTAAAGAACGCAATGATTCTAAACTTATGGTGGAAGTAATGAAACTTTTGAAGAGGAATGGCCTACCATTGCAACCTGGTACAGCAGATATTGTTTTCAGCATTTGTTACAATACTGATAATTGGCAGTTGATGTCTAAGTACTCAAAAAGGTTTGTCAAAGCTGGAGTAAAGCTACGTCAAACTGCTTTTGATCTATGGATGGAATTTGCTGCTAAAATAGGAGATGTTGAATCATTGTGGAAAGCAGAGAAGCTAAGATCTGAATTGATGAAGCAGCATACTGTTGCAAGTGGACTTTCATGTGCTAAGGGTTTTCTGTTAGAACGTAAGCCCGAGGAAGCTGCTTCCATCATTCAAGTTCTAAATCAGATTTTACCTGATACAAAGAAGTCCAGTATCGTGGTTGGGCTTGAAAAGTTAGTTAGTGAGTGGCCCTTAGAGGTTATTAGGCGCCAGAAGGAAGAGGACAGAAAGGCATTAGCTACATCTTTGATCTCTGATATCCCTACAATGGTTAGTTCCCTATCAAACACGGGCTTACAAGTGAGCATAAACATTGATGACCTAACCAGCAAAGAAGGTATTCTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

402

Amino Acids

44.94

Weight (kDa)

9.37

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21465 AT3G21465 AT4G15640 AT4G15640
fragaria_vesca	FvH4_4g17340 FvH4_4g17340
malus_domestica	MD13G1173000.v1.1 MD16G1174400.v1.1
prunus_persica	Prupe.1G141100_v2.0.a1
pyrus_communis	pycom13g14850 pycom16g14600
rosa_chinensis	RchiOBHm_Chr4g0421281 RchiOBHm_Chr4g0421901
rosa_laevigata	RLG00000007701
rosa_multiflora	Rmu_sc0007721.1_g000005
rosa_roxburghii	Rroxscaffold_5G00363510
rosa_rugosa	Rorug04G0169500
rosa_samantha	Rh4AG230400 Rh4BG233400 Rh4CG244600 Rh4DG229100
rosa_wichuraiana	Rw4G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	591
AccB1I	GGYRCC	2 cut(s)	140, 1062
AciI	CCGC	2 cut(s)	66, 130
AclWI	GGATC	1 cut(s)	592
AcsI	RAATTY	1 cut(s)	815
AcyI	GRCGYC	2 cut(s)	141, 1063
AfaI	GTAC	4 cut(s)	178, 262, 691, 752
AfiI	CCNNNNNNNGG	2 cut(s)	581, 1123
AflIII	ACRYGT	1 cut(s)	558
AgsI	TTSAA	7 cut(s)	43, 213, 374, 661, 842, 968, 1025
AjnI	CCWGG	1 cut(s)	685
Alw21I	GWGCWC	1 cut(s)	523
AlwI	GGATC	1 cut(s)	592
AlwNI	CAGNNNCTG	1 cut(s)	287
Ama87I	CYCGRG	2 cut(s)	93, 944
AoxI	GGCC	4 cut(s)	159, 540, 670, 1043
ApeKI	GCWGC	3 cut(s)	821, 886, 953
ApoI	RAATTY	1 cut(s)	815
Asp700I	GAANNNNTTC	1 cut(s)	1194
AspLEI	GCGC	4 cut(s)	143, 241, 592, 1065
AspS9I	GGNCC	1 cut(s)	1044
AsuII	TTCGAA	1 cut(s)	430
AvaI	CYCGRG	2 cut(s)	93, 944
BanI	GGYRCC	2 cut(s)	140, 1062
BanII	GRGCYC	1 cut(s)	523
BauI	CACGAG	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	523
BbvI	GCAGC	3 cut(s)	808, 898, 940
BccI	CCATC	4 cut(s)	193, 272, 805, 968
BceAI	ACGGC	1 cut(s)	174
BcgI	CGANNNNNNTGC	4 cut(s)	410, 444, 935, 969
BciT130I	CCWGG	1 cut(s)	687
BfaI	CTAG	1 cut(s)	576
BfoI	RGCGCY	3 cut(s)	144, 242, 1066
BglII	AGATCT	1 cut(s)	869
BisI	GCNGC	3 cut(s)	822, 887, 954
BlsI	GCNGC	3 cut(s)	823, 888, 955
BmcAI	AGTACT	2 cut(s)	178, 752
Bme1390I	CCNGG	1 cut(s)	687
BmeT110I	CYCGRG	2 cut(s)	93, 944
BmgT120I	GGNCC	1 cut(s)	1044
BmiI	GGNNCC	5 cut(s)	134, 142, 277, 573, 1064
BmrFI	CCNGG	1 cut(s)	687
BmsI	GCATC	4 cut(s)	79, 330, 465, 588
BpmI	CTGGAG	2 cut(s)	16, 795
Bpu10I	CCTNAGC	1 cut(s)	918
Bpu14I	TTCGAA	1 cut(s)	430
BpuEI	CTTGAG	1 cut(s)	237
Bsa29I	ATCGAT	1 cut(s)	338
BsaHI	GRCGYC	2 cut(s)	141, 1063
BsaJI	CCNNGG	2 cut(s)	136, 945
Bsc4I	CCNNNNNNNGG	2 cut(s)	581, 1123
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	1005
Bse3DI	GCAATG	2 cut(s)	628, 677
BseBI	CCWGG	1 cut(s)	687
BseCI	ATCGAT	1 cut(s)	338
BseDI	CCNNGG	2 cut(s)	136, 945
BseGI	GGATG	2 cut(s)	456, 816
BseLI	CCNNNNNNNGG	2 cut(s)	581, 1123
BseMI	GCAATG	2 cut(s)	628, 677
BseNI	ACTGG	1 cut(s)	1005
BseRI	GAGGAG	1 cut(s)	99
BseXI	GCAGC	3 cut(s)	808, 898, 940
BsgI	GTGCAG	1 cut(s)	240
Bsh1285I	CGRYCG	1 cut(s)	338
BshFI	GGCC	4 cut(s)	161, 542, 672, 1045
BshNI	GGYRCC	2 cut(s)	140, 1062
BshVI	ATCGAT	1 cut(s)	338
BsiEI	CGRYCG	1 cut(s)	338
BsiHKAI	GWGCWC	1 cut(s)	523
BsiHKCI	CYCGRG	2 cut(s)	93, 944
BsiSI	CCGG	1 cut(s)	144
BslI	CCNNNNNNNGG	2 cut(s)	581, 1123
BsnI	GGCC	4 cut(s)	161, 542, 672, 1045
BsoBI	CYCGRG	2 cut(s)	93, 944
Bsp119I	TTCGAA	1 cut(s)	430
Bsp1286I	GDGCHC	1 cut(s)	523
Bsp143I	GATC	6 cut(s)	9, 335, 584, 802, 869, 1104
BspACI	CCGC	2 cut(s)	66, 130
BspANI	GGCC	4 cut(s)	161, 542, 672, 1045
BspDI	ATCGAT	1 cut(s)	338
BspLI	GGNNCC	5 cut(s)	134, 142, 277, 573, 1064
BspPI	GGATC	1 cut(s)	592
BspQI	GCTCTTC	1 cut(s)	154
BspT104I	TTCGAA	1 cut(s)	430
BspT107I	GGYRCC	2 cut(s)	140, 1062
BsrDI	GCAATG	2 cut(s)	628, 677
BsrFI	RCCGGY	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	1005
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	136, 945
BssMI	GATC	6 cut(s)	9, 335, 584, 802, 869, 1104
BssNI	GRCGYC	2 cut(s)	141, 1063
BssSI	CACGAG	1 cut(s)	180
Bst2BI	CACGAG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	687
Bst4CI	ACNGT	3 cut(s)	444, 603, 895
Bst6I	CTCTTC	3 cut(s)	154, 656, 1068
BstACI	GRCGYC	2 cut(s)	141, 1063
BstAPI	GCANNNNNTGC	1 cut(s)	483
BstBI	TTCGAA	1 cut(s)	430
BstC8I	GCNNGC	2 cut(s)	26, 145
BstDEI	CTNAG	5 cut(s)	498, 747, 866, 918, 1048
BstF5I	GGATG	2 cut(s)	456, 816
BstH2I	RGCGCY	3 cut(s)	144, 242, 1066
BstHHI	GCGC	4 cut(s)	143, 241, 592, 1065
BstKTI	GATC	6 cut(s)	12, 338, 587, 805, 872, 1107
BstMBI	GATC	6 cut(s)	9, 335, 584, 802, 869, 1104
BstMCI	CGRYCG	1 cut(s)	338
BstMWI	GCNNNNNNNGC	1 cut(s)	483
BstNI	CCWGG	1 cut(s)	687
BstSCI	CCNGG	1 cut(s)	685
BstV1I	GCAGC	3 cut(s)	808, 898, 940
BstX2I	RGATCY	2 cut(s)	584, 869
BstXI	CCANNNNNNTGG	1 cut(s)	1012
BstYI	RGATCY	2 cut(s)	584, 869
Bsu15I	ATCGAT	1 cut(s)	338
BsuRI	GGCC	4 cut(s)	161, 542, 672, 1045
BsuTUI	ATCGAT	1 cut(s)	338
BtsCI	GGATG	2 cut(s)	456, 816
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	2 cut(s)	26, 145
CaiI	CAGNNNCTG	1 cut(s)	287
CfoI	GCGC	4 cut(s)	143, 241, 592, 1065
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	1044
ClaI	ATCGAT	1 cut(s)	338
CsiI	ACCWGGT	1 cut(s)	685
Csp6I	GTAC	4 cut(s)	177, 261, 690, 751
CviAII	CATG	2 cut(s)	512, 912
CviQI	GTAC	4 cut(s)	177, 261, 690, 751
DdeI	CTNAG	5 cut(s)	498, 747, 866, 918, 1048
DinI	GGCGCC	2 cut(s)	142, 1064
DpnI	GATC	6 cut(s)	11, 337, 586, 804, 871, 1106
DpnII	GATC	6 cut(s)	9, 335, 584, 802, 869, 1104
Eam1104I	CTCTTC	3 cut(s)	154, 656, 1068
EarI	CTCTTC	3 cut(s)	154, 656, 1068
EciI	GGCGGA	2 cut(s)	55, 145
Ecl136II	GAGCTC	1 cut(s)	521
Eco147I	AGGCCT	1 cut(s)	542
Eco24I	GRGCYC	1 cut(s)	523
Eco32I	GATATC	1 cut(s)	1114
Eco53kI	GAGCTC	1 cut(s)	521
Eco88I	CYCGRG	2 cut(s)	93, 944
EcoICRI	GAGCTC	1 cut(s)	521
EcoRII	CCWGG	1 cut(s)	685
EcoRV	GATATC	1 cut(s)	1114
EcoT38I	GRGCYC	1 cut(s)	523
EgeI	GGCGCC	2 cut(s)	142, 1064
EheI	GGCGCC	2 cut(s)	142, 1064
FaeI	CATG	2 cut(s)	515, 915
FalI	AAGNNNNNCTT	3 cut(s)	527, 559, 1182
FatI	CATG	2 cut(s)	511, 911
Fnu4HI	GCNGC	3 cut(s)	822, 887, 954
FokI	GGATG	2 cut(s)	443, 823
FriOI	GRGCYC	1 cut(s)	523
Fsp4HI	GCNGC	3 cut(s)	822, 887, 954
FspBI	CTAG	1 cut(s)	576
FspI	TGCGCA	1 cut(s)	591
GlaI	GCGC	4 cut(s)	142, 240, 591, 1064
GluI	GCNGC	3 cut(s)	822, 887, 954
GsuI	CTGGAG	2 cut(s)	16, 795
HaeII	RGCGCY	3 cut(s)	144, 242, 1066
HaeIII	GGCC	4 cut(s)	161, 542, 672, 1045
HapII	CCGG	1 cut(s)	144
HhaI	GCGC	4 cut(s)	143, 241, 592, 1065
Hin1I	GRCGYC	2 cut(s)	141, 1063
Hin1II	CATG	2 cut(s)	515, 915
Hin6I	GCGC	4 cut(s)	141, 239, 590, 1063
HinP1I	GCGC	4 cut(s)	141, 239, 590, 1063
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	3 cut(s)	96, 626, 842
HpaII	CCGG	1 cut(s)	144
Hpy166II	GTNNAC	1 cut(s)	905
Hpy188I	TCNGA	5 cut(s)	466, 584, 874, 981, 1111
Hpy188III	TCNNGA	3 cut(s)	33, 86, 524
Hpy8I	GTNNAC	1 cut(s)	905
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	7 cut(s)	263, 286, 383, 437, 532, 1063, 1184
HpyCH4III	ACNGT	3 cut(s)	444, 603, 895
HpyCH4IV	ACGT	3 cut(s)	558, 787, 937
HpyCH4V	TGCA	8 cut(s)	4, 221, 316, 381, 421, 477, 682, 899
HpyF10VI	GCNNNNNNNGC	1 cut(s)	483
HpyF3I	CTNAG	5 cut(s)	498, 747, 866, 918, 1048
HpySE526I	ACGT	3 cut(s)	558, 787, 937
Hsp92I	GRCGYC	2 cut(s)	141, 1063
Hsp92II	CATG	2 cut(s)	515, 915
HspAI	GCGC	4 cut(s)	141, 239, 590, 1063
KasI	GGCGCC	2 cut(s)	140, 1062
KroI	GCCGGC	1 cut(s)	143
KroNI	GCCGGC	1 cut(s)	145
Kzo9I	GATC	6 cut(s)	9, 335, 584, 802, 869, 1104
LguI	GCTCTTC	1 cut(s)	154
LmnI	GCTCC	4 cut(s)	112, 295, 518, 577
Lsp1109I	GCAGC	3 cut(s)	808, 898, 940
LweI	GCATC	4 cut(s)	79, 330, 465, 588
MabI	ACCWGGT	1 cut(s)	685
MaeI	CTAG	1 cut(s)	576
MaeII	ACGT	3 cut(s)	558, 787, 937
MaeIII	GTNAC	2 cut(s)	493, 716
MalI	GATC	6 cut(s)	11, 337, 586, 804, 871, 1106
MboI	GATC	6 cut(s)	9, 335, 584, 802, 869, 1104
MboII	GAAGA	6 cut(s)	141, 240, 443, 444, 673, 1085
MflI	RGATCY	2 cut(s)	584, 869
MhlI	GDGCHC	1 cut(s)	523
MluCI	AATT	6 cut(s)	74, 376, 472, 730, 815, 875
Mly113I	GGCGCC	2 cut(s)	141, 1063
MlyI	GAGTC	1 cut(s)	105
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	8 cut(s)	120, 146, 277, 484, 657, 940, 1045, 1069
MroNI	GCCGGC	1 cut(s)	143
MroXI	GAANNNNTTC	1 cut(s)	1194
MseI	TTAA	3 cut(s)	324, 399, 471
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	687
MvaI	CCWGG	1 cut(s)	687
MwoI	GCNNNNNNNGC	1 cut(s)	483
NaeI	GCCGGC	1 cut(s)	145
NarI	GGCGCC	2 cut(s)	141, 1063
NdeII	GATC	6 cut(s)	9, 335, 584, 802, 869, 1104
NgoMIV	GCCGGC	1 cut(s)	143
NlaIII	CATG	2 cut(s)	515, 915
NlaIV	GGNNCC	5 cut(s)	134, 142, 277, 573, 1064
NmeAIII	GCCGAG	2 cut(s)	117, 512
NsbI	TGCGCA	1 cut(s)	591
NspV	TTCGAA	1 cut(s)	430
PceI	AGGCCT	1 cut(s)	542
PciSI	GCTCTTC	1 cut(s)	154
PdiI	GCCGGC	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	1194
PfeI	GAWTC	2 cut(s)	626, 842
PkrI	GCNGC	3 cut(s)	823, 888, 955
Ple19I	CGATCG	1 cut(s)	338
PleI	GAGTC	1 cut(s)	104
PluTI	GGCGCC	2 cut(s)	144, 1066
PpsI	GAGTC	1 cut(s)	104
Psp124BI	GAGCTC	1 cut(s)	523
Psp6I	CCWGG	1 cut(s)	685
PspGI	CCWGG	1 cut(s)	685
PspN4I	GGNNCC	5 cut(s)	134, 142, 277, 573, 1064
PspPI	GGNCC	1 cut(s)	1044
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	2 cut(s)	584, 869
PvuI	CGATCG	1 cut(s)	338
RsaI	GTAC	4 cut(s)	178, 262, 691, 752
RsaNI	GTAC	4 cut(s)	177, 261, 690, 751
SacI	GAGCTC	1 cut(s)	523
SapI	GCTCTTC	1 cut(s)	154
SaqAI	TTAA	3 cut(s)	324, 399, 471
SatI	GCNGC	3 cut(s)	822, 887, 954
Sau3AI	GATC	6 cut(s)	9, 335, 584, 802, 869, 1104
Sau96I	GGNCC	1 cut(s)	1044
ScaI	AGTACT	2 cut(s)	178, 752
SchI	GAGTC	1 cut(s)	105
ScrFI	CCNGG	1 cut(s)	687
SduI	GDGCHC	1 cut(s)	523
SexAI	ACCWGGT	1 cut(s)	685
SfaNI	GCATC	4 cut(s)	79, 330, 465, 588
SfoI	GGCGCC	2 cut(s)	142, 1064
SfuI	TTCGAA	1 cut(s)	430
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
Sse9I	AATT	6 cut(s)	74, 376, 472, 730, 815, 875
SseBI	AGGCCT	1 cut(s)	542
SsiI	CCGC	2 cut(s)	66, 130
SspDI	GGCGCC	2 cut(s)	140, 1062
SspMI	CTAG	1 cut(s)	576
SstI	GAGCTC	1 cut(s)	523
StuI	AGGCCT	1 cut(s)	542
StyD4I	CCNGG	1 cut(s)	685
TaaI	ACNGT	3 cut(s)	444, 603, 895
TaiI	ACGT	3 cut(s)	561, 790, 940
TaqI	TCGA	4 cut(s)	102, 267, 338, 430
TasI	AATT	6 cut(s)	74, 376, 472, 730, 815, 875
TatI	WGTACW	2 cut(s)	176, 750
TfiI	GAWTC	2 cut(s)	626, 842
Tru1I	TTAA	3 cut(s)	324, 399, 471
Tru9I	TTAA	3 cut(s)	324, 399, 471
TscAI	CASTG	1 cut(s)	228
TseI	GCWGC	3 cut(s)	821, 886, 953
TspDTI	ATGAA	4 cut(s)	500, 665, 896, 900
TspRI	CASTG	1 cut(s)	228
XapI	RAATTY	1 cut(s)	815
XmnI	GAANNNNTTC	1 cut(s)	1194
XspI	CTAG	1 cut(s)	576
ZrmI	AGTACT	2 cut(s)	178, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.