Prupe.1G141100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0009250
Physical Location & Seq
Forward (+)
11102989 .. 11106936
3948 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G141100.1

Sequence Viewer

Length: 1203 bp
ATGCAAGTGGTCTCCAATACTCGCAGGCTCTCTAGAGCTCTCAAATCTCCCATTTTTATCAAATCCGATCAATTTCTCTCTCCAGATGTCCGAGTTGTCGAAGCTCCCCTCACTTCTTTCCAATGGCGGAATCTCAGCACCGTCTCTTCGCGAAACTCCTTGTTCTCTGGCATTACTCGCGGTTATCTTCTGCCAATGGAACAACGCACAATGTGCACAATGATGACATTGAGAGCGCCCTTTTCTTCTGAAGCGAGTACCGTCGAAGGTGGTTCCACAGAGGTTGTGAAGGAGCTGTATGATAAAATGCTGCAATCTGTGAATATAAAACGATCAATGCCCCCCAATGCTTGGTTATGGTCATTGATTGAGAATTGCAAAAAGCATGAAGATATTAAGCTTCTATTTGACATATTGCAGAACTTACGCAGATTTAGATTGTCAAATCTTCGCATCCATTCTGATTTTAATTGCAATCTCTGCCGAGAGGTTACTAAGGCATGTGTTCGTGTGGGGGCCCTCGACTTTGGAAAGAAGGCCTTGTGGAAACATAATGTGTATGGATTGGCTCCTACCATCGGATCTGCTCACCATTTACTGCTACATGCTAAAGAACGCGGTGATGCTAAACTTATGATGGAAATAATGAGTCTTTTAAAGAAGAATGACTTACCCTTGCAACCTGGTACAGCAGATATTGTTTTCAGCATCTGTTACAATACTGATAATTGGCAGCTGATGTCTAAGTACTCAAAAAGGTTTGTCAAAGCTGGAGTAAAGCTACGGCAAACTGCGTTTGATCTATGGATGGAATTTGCTGCTAAAATAGGAGATGTTGAATCATTGTGGAAAATTGAGAAGTTAAGATCTGAGTCGATGAAGCAGCACACTGTTGCGAGTGGATTTTCATGTGCTAAGGGTTTTCTCTTAGTACATAAGCCAGAGGAAGCTGCTTCAGTCATCCAAGTTCTAAATCAGACTTTCCCTGATGCAAAGAAGTCCAGCATTGTGGTTGAGCTTCAAAAGTTGGTTAGTGAGTGGCCCTTAGAGGTTATTAGGCACCAAAAGGAAGAGGACAGAAAGGCATTAGCCATATCTTTAACATCTGATATTCCTGCAATGGTTAGTGGTCTATTAACCACGGGCTTACAAGTGAATGTAAACATTGAGGACCTAACCAGCAAAGAAGGTGTTCTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

401

Amino Acids

45.31

Weight (kDa)

9.36

Isoelectric Point (pI)

51.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1059
AccB7I CCANNNNNTGG 1 cut(s) 351
AccII CGCG 3 cut(s) 151, 180, 618
AciI CCGC 3 cut(s) 127, 180, 618
AclWI GGATC 1 cut(s) 589
AcsI RAATTY 1 cut(s) 812
AcuI CTGAAG 2 cut(s) 270, 939
AdeI CACNNNGTG 1 cut(s) 213
AfaI GTAC 4 cut(s) 259, 688, 749, 933
AfiI CCNNNNNNNGG 2 cut(s) 351, 578
AgsI TTSAA 2 cut(s) 839, 1022
AjnI CCWGG 1 cut(s) 682
AluBI AGCT 9 cut(s) 38, 104, 295, 400, 736, 770, 781, 950, 1018
AluI AGCT 9 cut(s) 38, 104, 295, 400, 736, 770, 781, 950, 1018
Alw21I GWGCWC 2 cut(s) 40, 218
Alw26I GTCTC 2 cut(s) 16, 148
Alw44I GTGCAC 1 cut(s) 214
AlwI GGATC 1 cut(s) 589
AlwNI CAGNNNCTG 1 cut(s) 711
AoxI GGCC 3 cut(s) 516, 537, 1040
ApaI GGGCCC 1 cut(s) 520
ApaLI GTGCAC 1 cut(s) 214
ApeKI GCWGC 5 cut(s) 310, 733, 818, 883, 950
ApoI RAATTY 1 cut(s) 812
Asp700I GAANNNNTTC 1 cut(s) 1191
AspLEI GCGC 1 cut(s) 238
AspS9I GGNCC 4 cut(s) 516, 517, 1041, 1171
AsuHPI GGTGA 2 cut(s) 581, 632
AvaII GGWCC 1 cut(s) 1171
BaeGI GKGCMC 2 cut(s) 218, 520
BanI GGYRCC 1 cut(s) 1059
BanII GRGCYC 2 cut(s) 40, 520
Bbv12I GWGCWC 2 cut(s) 40, 218
BbvI GCAGC 5 cut(s) 297, 745, 805, 895, 937
BccI CCATC 3 cut(s) 584, 631, 802
BceAI ACGGC 1 cut(s) 800
BciT130I CCWGG 1 cut(s) 684
BcoDI GTCTC 2 cut(s) 16, 148
BfaI CTAG 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 239
BglII AGATCT 1 cut(s) 866
BisI GCNGC 5 cut(s) 311, 734, 819, 884, 951
BlsI GCNGC 5 cut(s) 312, 735, 820, 885, 952
BmcAI AGTACT 1 cut(s) 749
Bme1390I CCNGG 1 cut(s) 684
Bme18I GGWCC 1 cut(s) 1171
BmgT120I GGNCC 4 cut(s) 516, 517, 1041, 1171
BmiI GGNNCC 5 cut(s) 274, 517, 518, 570, 1061
BmrFI CCNGG 1 cut(s) 684
BmsI GCATC 4 cut(s) 462, 613, 717, 979
BpmI CTGGAG 2 cut(s) 66, 792
Bpu10I CCTNAGC 1 cut(s) 915
BsaI GGTCTC 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 1140
Bsc4I CCNNNNNNNGG 2 cut(s) 351, 578
Bse3DI GCAATG 1 cut(s) 1125
BseBI CCWGG 1 cut(s) 684
BseDI CCNNGG 1 cut(s) 1140
BseGI GGATG 3 cut(s) 453, 813, 960
BseLI CCNNNNNNNGG 2 cut(s) 351, 578
BseMI GCAATG 1 cut(s) 1125
BseMII CTCAG 2 cut(s) 148, 861
BseSI GKGCMC 2 cut(s) 218, 520
BseXI GCAGC 5 cut(s) 297, 745, 805, 895, 937
Bsh1236I CGCG 3 cut(s) 151, 180, 618
BshFI GGCC 3 cut(s) 518, 539, 1042
BshNI GGYRCC 1 cut(s) 1059
BsiHKAI GWGCWC 2 cut(s) 40, 218
BslI CCNNNNNNNGG 2 cut(s) 351, 578
BsmAI GTCTC 2 cut(s) 16, 148
BsmBI CGTCTC 1 cut(s) 148
BsnI GGCC 3 cut(s) 518, 539, 1042
Bso31I GGTCTC 1 cut(s) 16
Bsp120I GGGCCC 1 cut(s) 516
Bsp1286I GDGCHC 3 cut(s) 40, 218, 520
Bsp143I GATC 5 cut(s) 67, 332, 581, 799, 866
Bsp68I TCGCGA 1 cut(s) 151
BspACI CCGC 3 cut(s) 127, 180, 618
BspANI GGCC 3 cut(s) 518, 539, 1042
BspCNI CTCAG 2 cut(s) 147, 862
BspFNI CGCG 3 cut(s) 151, 180, 618
BspLI GGNNCC 5 cut(s) 274, 517, 518, 570, 1061
BspPI GGATC 1 cut(s) 589
BspT107I GGYRCC 1 cut(s) 1059
BspTNI GGTCTC 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 1125
BssECI CCNNGG 1 cut(s) 1140
BssMI GATC 5 cut(s) 67, 332, 581, 799, 866
Bst2UI CCWGG 1 cut(s) 684
Bst4CI ACNGT 3 cut(s) 142, 262, 892
Bst6I CTCTTC 2 cut(s) 151, 1065
BstAPI GCANNNNNTGC 2 cut(s) 213, 480
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 7 cut(s) 134, 495, 744, 870, 915, 928, 1045
BstDSI CCRYGG 1 cut(s) 1140
BstF5I GGATG 3 cut(s) 453, 813, 960
BstFNI CGCG 3 cut(s) 151, 180, 618
BstH2I RGCGCY 1 cut(s) 239
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 5 cut(s) 70, 335, 584, 802, 869
BstMAI GTCTC 2 cut(s) 16, 148
BstMBI GATC 5 cut(s) 67, 332, 581, 799, 866
BstMWI GCNNNNNNNGC 3 cut(s) 177, 213, 480
BstNI CCWGG 1 cut(s) 684
BstNSI RCATGY 2 cut(s) 504, 608
BstSCI CCNGG 1 cut(s) 682
BstSLI GKGCMC 2 cut(s) 218, 520
BstUI CGCG 3 cut(s) 151, 180, 618
BstV1I GCAGC 5 cut(s) 297, 745, 805, 895, 937
BstX2I RGATCY 2 cut(s) 581, 866
BstXI CCANNNNNNTGG 1 cut(s) 1009
BstYI RGATCY 2 cut(s) 581, 866
BsuRI GGCC 3 cut(s) 518, 539, 1042
BtgI CCRYGG 1 cut(s) 1140
BtsCI GGATG 3 cut(s) 453, 813, 960
BtsIMutI CAGTG 1 cut(s) 888
BtuMI TCGCGA 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 26
CaiI CAGNNNCTG 1 cut(s) 711
CfoI GCGC 1 cut(s) 238
Cfr13I GGNCC 4 cut(s) 516, 517, 1041, 1171
CsiI ACCWGGT 1 cut(s) 682
Csp6I GTAC 4 cut(s) 258, 687, 748, 932
CspCI CAANNNNNGTGG 2 cut(s) 265, 300
CviAII CATG 4 cut(s) 386, 501, 605, 909
CviQI GTAC 4 cut(s) 258, 687, 748, 932
DdeI CTNAG 7 cut(s) 134, 495, 744, 870, 915, 928, 1045
DpnI GATC 5 cut(s) 69, 334, 583, 801, 868
DpnII GATC 5 cut(s) 67, 332, 581, 799, 866
DraI TTTAAA 1 cut(s) 657
DraIII CACNNNGTG 1 cut(s) 213
Eam1104I CTCTTC 2 cut(s) 151, 1065
EarI CTCTTC 2 cut(s) 151, 1065
EciI GGCGGA 1 cut(s) 142
Ecl136II GAGCTC 1 cut(s) 38
Eco147I AGGCCT 1 cut(s) 539
Eco24I GRGCYC 2 cut(s) 40, 520
Eco31I GGTCTC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 1171
Eco53kI GAGCTC 1 cut(s) 38
Eco57I CTGAAG 2 cut(s) 270, 939
EcoICRI GAGCTC 1 cut(s) 38
EcoO109I RGGNCCY 3 cut(s) 516, 517, 1171
EcoRII CCWGG 1 cut(s) 682
EcoT38I GRGCYC 2 cut(s) 40, 520
Esp3I CGTCTC 1 cut(s) 148
FaeI CATG 4 cut(s) 389, 504, 608, 912
FalI AAGNNNNNCTT 5 cut(s) 524, 556, 653, 685, 1179
FatI CATG 4 cut(s) 385, 500, 604, 908
Fnu4HI GCNGC 5 cut(s) 311, 734, 819, 884, 951
FokI GGATG 3 cut(s) 440, 820, 947
FriOI GRGCYC 2 cut(s) 40, 520
Fsp4HI GCNGC 5 cut(s) 311, 734, 819, 884, 951
FspBI CTAG 1 cut(s) 33
GlaI GCGC 1 cut(s) 237
GluI GCNGC 5 cut(s) 311, 734, 819, 884, 951
GsuI CTGGAG 2 cut(s) 66, 792
HaeII RGCGCY 1 cut(s) 239
HaeIII GGCC 3 cut(s) 518, 539, 1042
HhaI GCGC 1 cut(s) 238
Hin1II CATG 4 cut(s) 389, 504, 608, 912
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 4 cut(s) 130, 649, 839, 872
HphI GGTGA 2 cut(s) 581, 632
Hpy166II GTNNAC 2 cut(s) 216, 1162
Hpy188I TCNGA 8 cut(s) 67, 92, 250, 463, 581, 871, 978, 1108
Hpy188III TCNNGA 3 cut(s) 33, 83, 150
Hpy8I GTNNAC 2 cut(s) 216, 1162
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 4 cut(s) 260, 283, 529, 1181
HpyCH4III ACNGT 3 cut(s) 142, 262, 892
HpyCH4V TGCA 9 cut(s) 4, 216, 313, 378, 418, 474, 679, 992, 1118
HpyF10VI GCNNNNNNNGC 3 cut(s) 177, 213, 480
HpyF3I CTNAG 7 cut(s) 134, 495, 744, 870, 915, 928, 1045
Hsp92II CATG 4 cut(s) 389, 504, 608, 912
HspAI GCGC 1 cut(s) 236
Kzo9I GATC 5 cut(s) 67, 332, 581, 799, 866
LmnI GCTCC 3 cut(s) 109, 292, 574
Lsp1109I GCAGC 5 cut(s) 297, 745, 805, 895, 937
LweI GCATC 4 cut(s) 462, 613, 717, 979
MabI ACCWGGT 1 cut(s) 682
MaeI CTAG 1 cut(s) 33
MaeIII GTNAC 2 cut(s) 490, 713
MalI GATC 5 cut(s) 69, 334, 583, 801, 868
MboI GATC 5 cut(s) 67, 332, 581, 799, 866
MboII GAAGA 7 cut(s) 138, 179, 237, 401, 440, 673, 1082
MflI RGATCY 2 cut(s) 581, 866
MhlI GDGCHC 3 cut(s) 40, 218, 520
MluCI AATT 6 cut(s) 71, 373, 469, 727, 812, 852
MlyI GAGTC 2 cut(s) 658, 881
MnlI CCTC 8 cut(s) 119, 274, 481, 530, 937, 1042, 1066, 1162
MroXI GAANNNNTTC 1 cut(s) 1191
MseI TTAA 6 cut(s) 396, 468, 656, 863, 1100, 1136
MslI CAYNNNNRTG 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 736
MspR9I CCNGG 1 cut(s) 684
MvaI CCWGG 1 cut(s) 684
MvnI CGCG 3 cut(s) 151, 180, 618
MwoI GCNNNNNNNGC 3 cut(s) 177, 213, 480
NdeII GATC 5 cut(s) 67, 332, 581, 799, 866
NlaIII CATG 4 cut(s) 389, 504, 608, 912
NlaIV GGNNCC 5 cut(s) 274, 517, 518, 570, 1061
NmeAIII GCCGAG 1 cut(s) 509
NruI TCGCGA 1 cut(s) 151
NspI RCATGY 2 cut(s) 504, 608
PceI AGGCCT 1 cut(s) 539
PdmI GAANNNNTTC 1 cut(s) 1191
PfeI GAWTC 2 cut(s) 130, 839
PflMI CCANNNNNTGG 1 cut(s) 351
PkrI GCNGC 5 cut(s) 312, 735, 820, 885, 952
PleI GAGTC 2 cut(s) 657, 880
PpsI GAGTC 2 cut(s) 657, 880
PpuMI RGGWCCY 1 cut(s) 1171
Psp124BI GAGCTC 1 cut(s) 40
Psp5II RGGWCCY 1 cut(s) 1171
Psp6I CCWGG 1 cut(s) 682
PspGI CCWGG 1 cut(s) 682
PspN4I GGNNCC 5 cut(s) 274, 517, 518, 570, 1061
PspOMI GGGCCC 1 cut(s) 516
PspPI GGNCC 4 cut(s) 516, 517, 1041, 1171
PspPPI RGGWCCY 1 cut(s) 1171
PstNI CAGNNNCTG 1 cut(s) 711
PsuI RGATCY 2 cut(s) 581, 866
PvuII CAGCTG 1 cut(s) 736
RruI TCGCGA 1 cut(s) 151
RsaI GTAC 4 cut(s) 259, 688, 749, 933
RsaNI GTAC 4 cut(s) 258, 687, 748, 932
RseI CAYNNNNRTG 1 cut(s) 221
SacI GAGCTC 1 cut(s) 40
SaqAI TTAA 6 cut(s) 396, 468, 656, 863, 1100, 1136
SatI GCNGC 5 cut(s) 311, 734, 819, 884, 951
Sau3AI GATC 5 cut(s) 67, 332, 581, 799, 866
Sau96I GGNCC 4 cut(s) 516, 517, 1041, 1171
ScaI AGTACT 1 cut(s) 749
SchI GAGTC 2 cut(s) 658, 881
ScrFI CCNGG 1 cut(s) 684
SduI GDGCHC 3 cut(s) 40, 218, 520
SexAI ACCWGGT 1 cut(s) 682
SfaNI GCATC 4 cut(s) 462, 613, 717, 979
SinI GGWCC 1 cut(s) 1171
SmiMI CAYNNNNRTG 1 cut(s) 221
Sse9I AATT 6 cut(s) 71, 373, 469, 727, 812, 852
SseBI AGGCCT 1 cut(s) 539
SsiI CCGC 3 cut(s) 127, 180, 618
SspMI CTAG 1 cut(s) 33
SstI GAGCTC 1 cut(s) 40
StuI AGGCCT 1 cut(s) 539
StyD4I CCNGG 1 cut(s) 682
TaaI ACNGT 3 cut(s) 142, 262, 892
TaqI TCGA 4 cut(s) 99, 264, 522, 875
TasI AATT 6 cut(s) 71, 373, 469, 727, 812, 852
TatI WGTACW 2 cut(s) 747, 931
TfiI GAWTC 2 cut(s) 130, 839
Tru1I TTAA 6 cut(s) 396, 468, 656, 863, 1100, 1136
Tru9I TTAA 6 cut(s) 396, 468, 656, 863, 1100, 1136
TscAI CASTG 1 cut(s) 895
TseI GCWGC 5 cut(s) 310, 733, 818, 883, 950
TspDTI ATGAA 3 cut(s) 402, 893, 897
TspRI CASTG 1 cut(s) 895
Van91I CCANNNNNTGG 1 cut(s) 351
VneI GTGCAC 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 1171
XapI RAATTY 1 cut(s) 812
XbaI TCTAGA 1 cut(s) 32
XceI RCATGY 2 cut(s) 504, 608
XmnI GAANNNNTTC 1 cut(s) 1191
XspI CTAG 1 cut(s) 33
ZrmI AGTACT 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.