Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009250

Physical Location & Seq

Genomic Coordinates Reverse (-)

8918968 .. 8921994

Gene Structure 3027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G15640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGCAATTCCTCCAGAACTCTCGTAGAATCGCTACGGTCTTAAAACCCATTGTTACCACCGAGACTAATCTGAGATTCTTCTCCTCTGCTTCTCAAATCTCAAGATCCTTCCAATGGCGGAGTCAAGCATCTTCGTCTTCCTCTGTATTAAAAGGGATTGATAGTAGTAGTCACTTGTCCTCTATGAGCTTGTTGATCCCCAGATCGAGCTTTACGTCTGAAGCGGAAAAGCTTGCGGGAAATCCTACAGTGACTGTGAAGGATTTGCATGATAAAATGCTTAATTCTGTAAATGTCAAGAGATCAATGCCTCCAAATGCGTGGTTGTGGCTGTTGATTGAGAACTGTCAGAATCAGGATGATATTCATCTTCTCTTTGACGTTCTTCAGAATCTACGGAGATTTAGATTATCTAATCTTCGTATTCATGACAACTTCAATTGCAATCTATGCCAACAAGTTGCTAAGACTTGTGTACGTGTTGGGGCTATTGACTCTGGAAAGAAGGCTTTGTGGAAACATAATGTTCACGGTTTGACTCCCAGTGTTGCATCTGCACACCATCTTATGTCATATGCACTAGAGCACAAGAATTCTGAACTCATGGAAGAAGTAATGCAACTCCTGAAAACGAATGATCTGCCTCTACAACCCGGTACAGCAGATTTAGTTTTTAGGATCTGTCATGATACAGATAAGTGGGATCTACTAGCCAAGTACTCGAAAAAATTCTCCAAAGCTGGAGTTAAGTTGAGGAAGACCACATTCGATGTGTGGATGGAATTTGCTGCCAAGAGAGGTGATACAGAGTCGCTATGGAAAGTAGATAAACAGAGATCAGAGACATACAGTCAACACACTCTTTCTACTGCCTTTTCTTGTGCAAAGGGTTTCCTACTAGAAAGTAAACCTGAAGAAGCTGCTGCCGTCATCCAGATTATCTGCCAAGCATATCCTGATGAGAAAAAGTCTGCAATTTCGACTGAATTTGAGAAACTTGTAAACGAGTGGCCTGTGGACGTTATCAAGCACCAAACCGACGAAGATAAGAAGGCTCTTGCTGCTTCATTGAAATCTGTGATTCCTTCAATGGTTAATACATTGCTAAGCTCGGGTTTAAAAGTGAGCGTGGATCTGGATGAGTTAAACAAGAACGAAGCTCTTCTCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

390

Amino Acids

43.91

Weight (kDa)

8.81

Isoelectric Point (pI)

44.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21465 AT3G21465 AT4G15640 AT4G15640
fragaria_vesca	FvH4_4g17340 FvH4_4g17340
malus_domestica	MD13G1173000.v1.1 MD16G1174400.v1.1
prunus_persica	Prupe.1G141100_v2.0.a1
pyrus_communis	pycom13g14850 pycom16g14600
rosa_chinensis	RchiOBHm_Chr4g0421281 RchiOBHm_Chr4g0421901
rosa_laevigata	RLG00000007701
rosa_multiflora	Rmu_sc0007721.1_g000005
rosa_roxburghii	Rroxscaffold_5G00363510
rosa_rugosa	Rorug04G0169500
rosa_samantha	Rh4AG230400 Rh4BG233400 Rh4CG244600 Rh4DG229100
rosa_wichuraiana	Rw4G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	118, 224, 236
AclWI	GGATC	5 cut(s)	99, 190, 686, 711, 1140
AcsI	RAATTY	4 cut(s)	592, 728, 782, 986
AcuI	CTGAAG	3 cut(s)	240, 371, 933
AfaI	GTAC	3 cut(s)	477, 658, 719
AfiI	CCNNNNNNNGG	1 cut(s)	114
AflIII	ACRYGT	1 cut(s)	478
AgsI	TTSAA	3 cut(s)	439, 1072, 1089
AhdI	GACNNNNNGTC	1 cut(s)	849
AluBI	AGCT	8 cut(s)	189, 210, 232, 740, 920, 1110, 1160, 1170
AluI	AGCT	8 cut(s)	189, 210, 232, 740, 920, 1110, 1160, 1170
Alw21I	GWGCWC	1 cut(s)	588
Alw26I	GTCTC	2 cut(s)	56, 836
AlwI	GGATC	5 cut(s)	99, 190, 686, 711, 1140
AlwNI	CAGNNNCTG	1 cut(s)	254
Ama87I	CYCGRG	1 cut(s)	1111
AoxI	GGCC	1 cut(s)	1010
ApeKI	GCWGC	4 cut(s)	788, 920, 923, 1061
ApoI	RAATTY	4 cut(s)	592, 728, 782, 986
Asp700I	GAANNNNTTC	2 cut(s)	728, 1161
AsuC2I	CCSGG	1 cut(s)	654
AsuHPI	GGTGA	1 cut(s)	812
AvaI	CYCGRG	1 cut(s)	1111
BbsI	GAAGAC	2 cut(s)	129, 764
Bbv12I	GWGCWC	1 cut(s)	588
BbvI	GCAGC	4 cut(s)	775, 907, 910, 1048
BccI	CCATC	2 cut(s)	570, 772
BceAI	ACGGC	1 cut(s)	911
BcgI	CGANNNNNNTGC	2 cut(s)	622, 656
BcnI	CCSGG	1 cut(s)	654
BcoDI	GTCTC	2 cut(s)	56, 836
BfaI	CTAG	3 cut(s)	581, 710, 899
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	4 cut(s)	789, 921, 924, 1062
BlpI	GCTNAGC	1 cut(s)	1106
BlsI	GCNGC	4 cut(s)	790, 922, 925, 1063
BmcAI	AGTACT	1 cut(s)	719
Bme1390I	CCNGG	1 cut(s)	654
BmeRI	GACNNNNNGTC	1 cut(s)	849
BmeT110I	CYCGRG	1 cut(s)	1111
BmrFI	CCNGG	1 cut(s)	654
BmrI	ACTGGG	1 cut(s)	537
BmsI	GCATC	2 cut(s)	137, 560
BmuI	ACTGGG	1 cut(s)	537
BpiI	GAAGAC	2 cut(s)	129, 764
BpmI	CTGGAG	1 cut(s)	762
Bpu1102I	GCTNAGC	1 cut(s)	1106
BpuEI	CTTGAG	1 cut(s)	85
BpuMI	CCSGG	1 cut(s)	654
BsaAI	YACGTR	1 cut(s)	479
BsaBI	GATNNNNATC	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	543
Bse3DI	GCAATG	1 cut(s)	1100
Bse8I	GATNNNNATC	1 cut(s)	366
BseGI	GGATG	4 cut(s)	364, 783, 930, 1144
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMI	GCAATG	1 cut(s)	1100
BseMII	CTCAG	1 cut(s)	62
BseNI	ACTGG	1 cut(s)	543
BseRI	GAGGAG	1 cut(s)	73
BseXI	GCAGC	4 cut(s)	775, 907, 910, 1048
BsgI	GTGCAG	1 cut(s)	540
BshFI	GGCC	1 cut(s)	1012
BsiHKAI	GWGCWC	1 cut(s)	588
BsiHKCI	CYCGRG	1 cut(s)	1111
BsiSI	CCGG	1 cut(s)	654
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmAI	GTCTC	2 cut(s)	56, 836
BsnI	GGCC	1 cut(s)	1012
BsoBI	CYCGRG	1 cut(s)	1111
Bsp1286I	GDGCHC	1 cut(s)	588
Bsp143I	GATC	9 cut(s)	104, 195, 203, 302, 637, 678, 703, 836, 1132
Bsp1720I	GCTNAGC	1 cut(s)	1106
BspACI	CCGC	3 cut(s)	118, 224, 236
BspANI	GGCC	1 cut(s)	1012
BspCNI	CTCAG	1 cut(s)	63
BspHI	TCATGA	2 cut(s)	427, 685
BspPI	GGATC	5 cut(s)	99, 190, 686, 711, 1140
BspQI	GCTCTTC	1 cut(s)	1167
BsrDI	GCAATG	1 cut(s)	1100
BsrI	ACTGG	1 cut(s)	543
BssMI	GATC	9 cut(s)	104, 195, 203, 302, 637, 678, 703, 836, 1132
Bst4CI	ACNGT	6 cut(s)	37, 250, 256, 347, 533, 851
Bst6I	CTCTTC	1 cut(s)	1167
BstAPI	GCANNNNNTGC	1 cut(s)	450
BstBAI	YACGTR	1 cut(s)	479
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	4 cut(s)	71, 465, 1106, 1166
BstF5I	GGATG	4 cut(s)	364, 783, 930, 1144
BstKTI	GATC	9 cut(s)	107, 198, 206, 305, 640, 681, 706, 839, 1135
BstMAI	GTCTC	2 cut(s)	56, 836
BstMBI	GATC	9 cut(s)	104, 195, 203, 302, 637, 678, 703, 836, 1132
BstMWI	GCNNNNNNNGC	2 cut(s)	450, 1061
BstSCI	CCNGG	1 cut(s)	652
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	4 cut(s)	775, 907, 910, 1048
BstV2I	GAAGAC	2 cut(s)	129, 764
BstX2I	RGATCY	4 cut(s)	104, 678, 703, 1132
BstXI	CCANNNNNNTGG	1 cut(s)	321
BstYI	RGATCY	4 cut(s)	104, 678, 703, 1132
BsuRI	GGCC	1 cut(s)	1012
BtsCI	GGATG	4 cut(s)	364, 783, 930, 1144
BtsIMutI	CAGTG	2 cut(s)	255, 550
Cac8I	GCNNGC	1 cut(s)	234
CaiI	CAGNNNCTG	1 cut(s)	254
CciI	TCATGA	2 cut(s)	427, 685
Csp6I	GTAC	3 cut(s)	476, 657, 718
CviAII	CATG	4 cut(s)	269, 428, 604, 686
CviQI	GTAC	3 cut(s)	476, 657, 718
DdeI	CTNAG	4 cut(s)	71, 465, 1106, 1166
DpnI	GATC	9 cut(s)	106, 197, 205, 304, 639, 680, 705, 838, 1134
DpnII	GATC	9 cut(s)	104, 195, 203, 302, 637, 678, 703, 836, 1132
DraI	TTTAAA	1 cut(s)	1119
DriI	GACNNNNNGTC	1 cut(s)	849
Eam1104I	CTCTTC	1 cut(s)	1167
Eam1105I	GACNNNNNGTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	1167
EciI	GGCGGA	1 cut(s)	133
Eco57I	CTGAAG	3 cut(s)	240, 371, 933
Eco88I	CYCGRG	1 cut(s)	1111
EcoRI	GAATTC	1 cut(s)	592
FaeI	CATG	4 cut(s)	272, 431, 607, 689
FatI	CATG	4 cut(s)	268, 427, 603, 685
FauI	CCCGC	1 cut(s)	229
FauNDI	CATATG	1 cut(s)	574
Fnu4HI	GCNGC	4 cut(s)	789, 921, 924, 1062
FokI	GGATG	4 cut(s)	371, 790, 917, 1151
Fsp4HI	GCNGC	4 cut(s)	789, 921, 924, 1062
FspBI	CTAG	3 cut(s)	581, 710, 899
GluI	GCNGC	4 cut(s)	789, 921, 924, 1062
GsuI	CTGGAG	1 cut(s)	762
HaeIII	GGCC	1 cut(s)	1012
HapII	CCGG	1 cut(s)	654
Hin1II	CATG	4 cut(s)	272, 431, 607, 689
HincII	GTYRAC	1 cut(s)	854
HindII	GTYRAC	1 cut(s)	854
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	9 cut(s)	27, 75, 121, 352, 391, 494, 538, 809, 1081
HpaII	CCGG	1 cut(s)	654
HphI	GGTGA	1 cut(s)	812
Hpy166II	GTNNAC	6 cut(s)	476, 529, 854, 908, 1003, 1018
Hpy188I	TCNGA	6 cut(s)	72, 220, 351, 390, 598, 841
Hpy8I	GTNNAC	6 cut(s)	476, 529, 854, 908, 1003, 1018
Hpy99I	CGWCG	1 cut(s)	1043
HpyAV	CCTTC	5 cut(s)	118, 253, 499, 1045, 1095
HpyCH4III	ACNGT	6 cut(s)	37, 250, 256, 347, 533, 851
HpyCH4IV	ACGT	4 cut(s)	215, 381, 478, 1020
HpyCH4V	TGCA	9 cut(s)	4, 268, 444, 551, 557, 578, 619, 884, 974
HpyF10VI	GCNNNNNNNGC	2 cut(s)	450, 1061
HpyF3I	CTNAG	4 cut(s)	71, 465, 1106, 1166
HpySE526I	ACGT	4 cut(s)	215, 381, 478, 1020
Hsp92II	CATG	4 cut(s)	272, 431, 607, 689
Kzo9I	GATC	9 cut(s)	104, 195, 203, 302, 637, 678, 703, 836, 1132
LguI	GCTCTTC	1 cut(s)	1167
Lsp1109I	GCAGC	4 cut(s)	775, 907, 910, 1048
LweI	GCATC	2 cut(s)	137, 560
MaeI	CTAG	3 cut(s)	581, 710, 899
MaeII	ACGT	4 cut(s)	215, 381, 478, 1020
MaeIII	GTNAC	3 cut(s)	52, 170, 250
MalI	GATC	9 cut(s)	106, 197, 205, 304, 639, 680, 705, 838, 1134
MboI	GATC	9 cut(s)	104, 195, 203, 302, 637, 678, 703, 836, 1132
MfeI	CAATTG	1 cut(s)	439
MflI	RGATCY	4 cut(s)	104, 678, 703, 1132
MhlI	GDGCHC	1 cut(s)	588
MluCI	AATT	8 cut(s)	5, 283, 439, 592, 728, 782, 975, 986
MlyI	GAGTC	4 cut(s)	130, 488, 532, 818
MnlI	CCTC	8 cut(s)	20, 94, 151, 190, 321, 654, 747, 791
MroXI	GAANNNNTTC	2 cut(s)	728, 1161
MseI	TTAA	7 cut(s)	41, 149, 282, 747, 1095, 1118, 1145
MspA1I	CMGCKG	1 cut(s)	1170
MspI	CCGG	1 cut(s)	654
MspR9I	CCNGG	1 cut(s)	654
MunI	CAATTG	1 cut(s)	439
MwoI	GCNNNNNNNGC	2 cut(s)	450, 1061
NciI	CCSGG	1 cut(s)	654
NdeI	CATATG	1 cut(s)	574
NdeII	GATC	9 cut(s)	104, 195, 203, 302, 637, 678, 703, 836, 1132
NlaIII	CATG	4 cut(s)	272, 431, 607, 689
NmuCI	GTSAC	2 cut(s)	170, 250
PagI	TCATGA	2 cut(s)	427, 685
PciSI	GCTCTTC	1 cut(s)	1167
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PdmI	GAANNNNTTC	2 cut(s)	728, 1161
PfeI	GAWTC	5 cut(s)	27, 75, 352, 391, 1081
PkrI	GCNGC	4 cut(s)	790, 922, 925, 1063
PleI	GAGTC	4 cut(s)	129, 488, 532, 817
PpsI	GAGTC	4 cut(s)	129, 488, 532, 817
Ppu21I	YACGTR	1 cut(s)	479
PstNI	CAGNNNCTG	1 cut(s)	254
PsuI	RGATCY	4 cut(s)	104, 678, 703, 1132
PvuII	CAGCTG	1 cut(s)	1170
RsaI	GTAC	3 cut(s)	477, 658, 719
RsaNI	GTAC	3 cut(s)	476, 657, 718
SapI	GCTCTTC	1 cut(s)	1167
SaqAI	TTAA	7 cut(s)	41, 149, 282, 747, 1095, 1118, 1145
SatI	GCNGC	4 cut(s)	789, 921, 924, 1062
Sau3AI	GATC	9 cut(s)	104, 195, 203, 302, 637, 678, 703, 836, 1132
ScaI	AGTACT	1 cut(s)	719
SchI	GAGTC	4 cut(s)	130, 488, 532, 818
ScrFI	CCNGG	1 cut(s)	654
SduI	GDGCHC	1 cut(s)	588
SfaNI	GCATC	2 cut(s)	137, 560
SfcI	CTRYAG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	100
SmoI	CTYRAG	1 cut(s)	100
Sse9I	AATT	8 cut(s)	5, 283, 439, 592, 728, 782, 975, 986
SsiI	CCGC	3 cut(s)	118, 224, 236
SspMI	CTAG	3 cut(s)	581, 710, 899
StyD4I	CCNGG	1 cut(s)	652
TaaI	ACNGT	6 cut(s)	37, 250, 256, 347, 533, 851
TaiI	ACGT	4 cut(s)	218, 384, 481, 1023
TaqI	TCGA	4 cut(s)	206, 722, 768, 980
TasI	AATT	8 cut(s)	5, 283, 439, 592, 728, 782, 975, 986
TatI	WGTACW	1 cut(s)	717
TfiI	GAWTC	5 cut(s)	27, 75, 352, 391, 1081
Tru1I	TTAA	7 cut(s)	41, 149, 282, 747, 1095, 1118, 1145
Tru9I	TTAA	7 cut(s)	41, 149, 282, 747, 1095, 1118, 1145
TscAI	CASTG	2 cut(s)	255, 550
TseFI	GTSAC	2 cut(s)	170, 250
TseI	GCWGC	4 cut(s)	788, 920, 923, 1061
Tsp45I	GTSAC	2 cut(s)	170, 250
TspDTI	ATGAA	3 cut(s)	356, 416, 1056
TspGWI	ACGGA	1 cut(s)	412
TspRI	CASTG	2 cut(s)	255, 550
XapI	RAATTY	4 cut(s)	592, 728, 782, 986
XmnI	GAANNNNTTC	2 cut(s)	728, 1161
XspI	CTAG	3 cut(s)	581, 710, 899
ZrmI	AGTACT	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.