Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0009250

Physical Location & Seq

Genomic Coordinates Reverse (-)

43450754 .. 43454831

Gene Structure 4078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG229100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGCAAGTGCTCTCCAACACTCGCAGGCTCTCCAGATTCCTCGAGTCTCCAATCTTCATCTTCTCCGAACGACTCCTCGCTCCCGACGCGCCACTCGCCGAAGCTCCACGCGCTCGTCTCCAATGGCGGAAGCTCACCACTCTCTCTCCCCAACCCTCTGGCATTACTCGAGGTTGTTGTCTTTCGCTGACGGAGCAACACTCGATGATGATGGCATTTAGGGCAGCATTTTCATCTGAGGCGAGTGCGGTTGAAGCTATTCCCACAGAGGCTGTGAAGGAGCTGTACGATAAAATGCTGGAATCTGTGAATGTTAAACGCTCGATGCCCCCTAATGCTTGGTTGTGGTCCTTGATTGAGAATTGCAAAAATCATGATGATATTAAGCTTTTATTTGACATCTTGCAGAACCTGCGACGATTTAGACTGTCAAATCTACGCATCCATTCAAATTTTAATTGCAATCTCTGCCAAGAGGTTACTAAGGCATGCGCTCGCGTGGGGGCCCTCAACTTTGGAAAGAAGGGCTTGTGGAAACACAATGTGTACGGATTGACCCCTAGTATCGGATCTGCTCACCATTTACTGACATATGCTAAAGAGCACAATGATGTTAAACTTATGATGGATGTAATGACACTTTTGAAGGAGAATGACTTACCTTTGCAATCTGGTACAGCAGATATTGTTTTCAGCATTTGTTACAATACTGATAACTGGAAGTTGATGTCTAAGTACTCAAAGAGATTTGTCGAGGCTGGAGTAAAGCTACGAAGATCTGCATTTGATGTCTGGATGGAATTCGCTGCTAAAATAGGAGATGTTGAATCCTTATGGGAAATTGAGAAGTTGAGATCTGAGTCTCAGAAGCAGCACACTGTTGTGAGTGGATTTTCATGTGCAAAGGGTTTACTATTAGAGCATAAGCCTGAGGAAGCTGCCGCCGTCATTCAAATATTACTAAACCAGGTTCAGTTATTGTTTTCATCACTTTATATTATGATGCTGCAGTCCAGAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

340

Amino Acids

38.71

Weight (kDa)

9.04

Isoelectric Point (pI)

56.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21465 AT3G21465 AT4G15640 AT4G15640
fragaria_vesca	FvH4_4g17340 FvH4_4g17340
malus_domestica	MD13G1173000.v1.1 MD16G1174400.v1.1
prunus_persica	Prupe.1G141100_v2.0.a1
pyrus_communis	pycom13g14850 pycom16g14600
rosa_chinensis	RchiOBHm_Chr4g0421281 RchiOBHm_Chr4g0421901
rosa_laevigata	RLG00000007701
rosa_multiflora	Rmu_sc0007721.1_g000005
rosa_roxburghii	Rroxscaffold_5G00363510
rosa_rugosa	Rorug04G0169500
rosa_samantha	Rh4AG230400 Rh4BG233400 Rh4CG244600 Rh4DG229100
rosa_wichuraiana	Rw4G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	420
AccII	CGCG	3 cut(s)	89, 111, 498
AciI	CCGC	3 cut(s)	127, 248, 942
AclWI	GGATC	1 cut(s)	577
AcsI	RAATTY	2 cut(s)	451, 800
AdeI	CACNNNGTG	1 cut(s)	544
AfaI	GTAC	4 cut(s)	287, 548, 676, 737
AfiI	CCNNNNNNNGG	1 cut(s)	566
AgsI	TTSAA	5 cut(s)	254, 450, 646, 827, 953
AjnI	CCWGG	1 cut(s)	966
AleI	CACNNNNGTG	1 cut(s)	881
AluBI	AGCT	7 cut(s)	104, 133, 257, 283, 388, 769, 938
AluI	AGCT	7 cut(s)	104, 133, 257, 283, 388, 769, 938
Alw21I	GWGCWC	2 cut(s)	12, 606
Alw26I	GTCTC	3 cut(s)	51, 122, 867
AlwI	GGATC	1 cut(s)	577
AlwNI	CAGNNNCTG	2 cut(s)	272, 412
Ama87I	CYCGRG	2 cut(s)	41, 168
AoxI	GGCC	1 cut(s)	504
ApaI	GGGCCC	1 cut(s)	508
ApeKI	GCWGC	5 cut(s)	224, 806, 871, 938, 1006
ApoI	RAATTY	2 cut(s)	451, 800
Asp700I	GAANNNNTTC	1 cut(s)	258
AspLEI	GCGC	3 cut(s)	91, 113, 494
AspS9I	GGNCC	3 cut(s)	348, 504, 505
AsuHPI	GGTGA	2 cut(s)	127, 569
AvaI	CYCGRG	2 cut(s)	41, 168
AvaII	GGWCC	1 cut(s)	348
AxyI	CCTNAGG	1 cut(s)	930
BaeGI	GKGCMC	1 cut(s)	508
BanII	GRGCYC	1 cut(s)	508
BarI	GAAGNNNNNNTAC	2 cut(s)	269, 301
Bbv12I	GWGCWC	2 cut(s)	12, 606
BbvI	GCAGC	5 cut(s)	236, 793, 883, 925, 993
BccI	CCATC	3 cut(s)	205, 619, 790
BceAI	ACGGC	1 cut(s)	929
BciT130I	CCWGG	1 cut(s)	968
BcoDI	GTCTC	3 cut(s)	51, 122, 867
BfaI	CTAG	1 cut(s)	561
BfmI	CTRYAG	1 cut(s)	1007
BfuAI	ACCTGC	1 cut(s)	420
BglII	AGATCT	2 cut(s)	776, 854
BisI	GCNGC	6 cut(s)	225, 807, 872, 939, 942, 1007
BlsI	GCNGC	6 cut(s)	226, 808, 873, 940, 943, 1008
BmcAI	AGTACT	1 cut(s)	737
Bme1390I	CCNGG	1 cut(s)	968
Bme18I	GGWCC	1 cut(s)	348
BmeT110I	CYCGRG	2 cut(s)	41, 168
BmgT120I	GGNCC	3 cut(s)	348, 504, 505
BmiI	GGNNCC	2 cut(s)	505, 506
BmrFI	CCNGG	1 cut(s)	968
BmsI	GCATC	3 cut(s)	315, 450, 993
BplI	GAGNNNNNCTC	2 cut(s)	185, 217
BpmI	CTGGAG	2 cut(s)	16, 780
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	1 cut(s)	566
Bse1I	ACTGG	1 cut(s)	722
Bse21I	CCTNAGG	1 cut(s)	930
BseBI	CCWGG	1 cut(s)	968
BseGI	GGATG	3 cut(s)	441, 634, 801
BseLI	CCNNNNNNNGG	1 cut(s)	566
BseMII	CTCAG	4 cut(s)	228, 849, 878, 921
BseNI	ACTGG	1 cut(s)	722
BseRI	GAGGAG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	508
BseXI	GCAGC	5 cut(s)	236, 793, 883, 925, 993
Bsh1236I	CGCG	3 cut(s)	89, 111, 498
BshFI	GGCC	1 cut(s)	506
BsiHKAI	GWGCWC	2 cut(s)	12, 606
BsiHKCI	CYCGRG	2 cut(s)	41, 168
BslI	CCNNNNNNNGG	1 cut(s)	566
BsmAI	GTCTC	3 cut(s)	51, 122, 867
BsmBI	CGTCTC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	506
BsoBI	CYCGRG	2 cut(s)	41, 168
Bsp120I	GGGCCC	1 cut(s)	504
Bsp1286I	GDGCHC	3 cut(s)	12, 508, 606
Bsp143I	GATC	3 cut(s)	569, 776, 854
BspACI	CCGC	3 cut(s)	127, 248, 942
BspANI	GGCC	1 cut(s)	506
BspCNI	CTCAG	4 cut(s)	229, 850, 877, 922
BspFNI	CGCG	3 cut(s)	89, 111, 498
BspHI	TCATGA	1 cut(s)	373
BspLI	GGNNCC	2 cut(s)	505, 506
BspMAI	CTGCAG	1 cut(s)	1011
BspMI	ACCTGC	1 cut(s)	420
BspPI	GGATC	1 cut(s)	577
BsrI	ACTGG	1 cut(s)	722
BssMI	GATC	3 cut(s)	569, 776, 854
Bst2UI	CCWGG	1 cut(s)	968
Bst4CI	ACNGT	2 cut(s)	429, 880
BstAPI	GCANNNNNTGC	2 cut(s)	412, 468
BstC8I	GCNNGC	3 cut(s)	26, 490, 496
BstDEI	CTNAG	6 cut(s)	237, 483, 732, 858, 864, 930
BstF5I	GGATG	3 cut(s)	441, 634, 801
BstFNI	CGCG	3 cut(s)	89, 111, 498
BstHHI	GCGC	3 cut(s)	91, 113, 494
BstKTI	GATC	3 cut(s)	572, 779, 857
BstMAI	GTCTC	3 cut(s)	51, 122, 867
BstMBI	GATC	3 cut(s)	569, 776, 854
BstMWI	GCNNNNNNNGC	8 cut(s)	86, 95, 110, 193, 221, 254, 412, 468
BstNI	CCWGG	1 cut(s)	968
BstNSI	RCATGY	1 cut(s)	492
BstSCI	CCNGG	1 cut(s)	966
BstSFI	CTRYAG	1 cut(s)	1007
BstSLI	GKGCMC	1 cut(s)	508
BstUI	CGCG	3 cut(s)	89, 111, 498
BstV1I	GCAGC	5 cut(s)	236, 793, 883, 925, 993
BstX2I	RGATCY	3 cut(s)	569, 776, 854
BstXI	CCANNNNNNTGG	1 cut(s)	158
BstYI	RGATCY	3 cut(s)	569, 776, 854
Bsu36I	CCTNAGG	1 cut(s)	930
BsuRI	GGCC	1 cut(s)	506
BtsCI	GGATG	3 cut(s)	441, 634, 801
BtsIMutI	CAGTG	1 cut(s)	876
BveI	ACCTGC	1 cut(s)	420
Cac8I	GCNNGC	3 cut(s)	26, 490, 496
CaiI	CAGNNNCTG	2 cut(s)	272, 412
CciI	TCATGA	1 cut(s)	373
CfoI	GCGC	3 cut(s)	91, 113, 494
Cfr13I	GGNCC	3 cut(s)	348, 504, 505
CseI	GACGC	1 cut(s)	95
CsiI	ACCWGGT	1 cut(s)	966
Csp6I	GTAC	4 cut(s)	286, 547, 675, 736
CviAII	CATG	3 cut(s)	374, 489, 897
CviQI	GTAC	4 cut(s)	286, 547, 675, 736
DdeI	CTNAG	6 cut(s)	237, 483, 732, 858, 864, 930
DpnI	GATC	3 cut(s)	571, 778, 856
DpnII	GATC	3 cut(s)	569, 776, 854
DraIII	CACNNNGTG	1 cut(s)	544
EciI	GGCGGA	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	508
Eco47I	GGWCC	1 cut(s)	348
Eco81I	CCTNAGG	1 cut(s)	930
Eco88I	CYCGRG	2 cut(s)	41, 168
EcoO109I	RGGNCCY	2 cut(s)	504, 505
EcoRI	GAATTC	1 cut(s)	800
EcoRII	CCWGG	1 cut(s)	966
EcoT38I	GRGCYC	1 cut(s)	508
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	3 cut(s)	377, 492, 900
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FatI	CATG	3 cut(s)	373, 488, 896
FauNDI	CATATG	1 cut(s)	592
Fnu4HI	GCNGC	6 cut(s)	225, 807, 872, 939, 942, 1007
FokI	GGATG	3 cut(s)	428, 641, 808
FriOI	GRGCYC	1 cut(s)	508
Fsp4HI	GCNGC	6 cut(s)	225, 807, 872, 939, 942, 1007
FspBI	CTAG	1 cut(s)	561
GlaI	GCGC	3 cut(s)	90, 112, 493
GluI	GCNGC	6 cut(s)	225, 807, 872, 939, 942, 1007
GsuI	CTGGAG	2 cut(s)	16, 780
HaeIII	GGCC	1 cut(s)	506
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	3 cut(s)	91, 113, 494
Hin1II	CATG	3 cut(s)	377, 492, 900
Hin6I	GCGC	3 cut(s)	89, 111, 492
HinP1I	GCGC	3 cut(s)	89, 111, 492
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	6 cut(s)	36, 44, 72, 302, 827, 860
HphI	GGTGA	2 cut(s)	127, 569
Hpy166II	GTNNAC	2 cut(s)	547, 911
Hpy188I	TCNGA	5 cut(s)	67, 238, 569, 859, 867
Hpy188III	TCNNGA	5 cut(s)	33, 83, 374, 793, 1014
Hpy8I	GTNNAC	2 cut(s)	547, 911
Hpy99I	CGWCG	2 cut(s)	89, 420
HpyAV	CCTTC	3 cut(s)	271, 517, 640
HpyCH4III	ACNGT	2 cut(s)	429, 880
HpyCH4V	TGCA	8 cut(s)	4, 366, 406, 462, 667, 782, 902, 1009
HpyF10VI	GCNNNNNNNGC	8 cut(s)	86, 95, 110, 193, 221, 254, 412, 468
HpyF3I	CTNAG	6 cut(s)	237, 483, 732, 858, 864, 930
Hsp92II	CATG	3 cut(s)	377, 492, 900
HspAI	GCGC	3 cut(s)	89, 111, 492
Kzo9I	GATC	3 cut(s)	569, 776, 854
LmnI	GCTCC	4 cut(s)	85, 109, 193, 280
Lsp1109I	GCAGC	5 cut(s)	236, 793, 883, 925, 993
LweI	GCATC	3 cut(s)	315, 450, 993
MabI	ACCWGGT	1 cut(s)	966
MaeI	CTAG	1 cut(s)	561
MaeIII	GTNAC	2 cut(s)	478, 701
MalI	GATC	3 cut(s)	571, 778, 856
MboI	GATC	3 cut(s)	569, 776, 854
MboII	GAAGA	3 cut(s)	46, 52, 786
MflI	RGATCY	3 cut(s)	569, 776, 854
MhlI	GDGCHC	3 cut(s)	12, 508, 606
MluCI	AATT	5 cut(s)	361, 451, 457, 800, 840
MlyI	GAGTC	3 cut(s)	53, 66, 869
MmeI	TCCRAC	1 cut(s)	39
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	4 cut(s)	315, 384, 456, 615
MslI	CAYNNNNRTG	2 cut(s)	609, 881
MspR9I	CCNGG	1 cut(s)	968
MvaI	CCWGG	1 cut(s)	968
MvnI	CGCG	3 cut(s)	89, 111, 498
MwoI	GCNNNNNNNGC	8 cut(s)	86, 95, 110, 193, 221, 254, 412, 468
NdeI	CATATG	1 cut(s)	592
NdeII	GATC	3 cut(s)	569, 776, 854
NlaIII	CATG	3 cut(s)	377, 492, 900
NlaIV	GGNNCC	2 cut(s)	505, 506
NspI	RCATGY	1 cut(s)	492
OliI	CACNNNNGTG	1 cut(s)	881
PaeI	GCATGC	1 cut(s)	492
PaeR7I	CTCGAG	2 cut(s)	41, 168
PagI	TCATGA	1 cut(s)	373
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	3 cut(s)	36, 302, 827
PkrI	GCNGC	6 cut(s)	226, 808, 873, 940, 943, 1008
PleI	GAGTC	3 cut(s)	52, 66, 868
PpsI	GAGTC	3 cut(s)	52, 66, 868
Psp6I	CCWGG	1 cut(s)	966
PspGI	CCWGG	1 cut(s)	966
PspN4I	GGNNCC	2 cut(s)	505, 506
PspOMI	GGGCCC	1 cut(s)	504
PspPI	GGNCC	3 cut(s)	348, 504, 505
PspXI	VCTCGAGB	2 cut(s)	41, 168
PstI	CTGCAG	1 cut(s)	1011
PstNI	CAGNNNCTG	2 cut(s)	272, 412
PsuI	RGATCY	3 cut(s)	569, 776, 854
RsaI	GTAC	4 cut(s)	287, 548, 676, 737
RsaNI	GTAC	4 cut(s)	286, 547, 675, 736
RseI	CAYNNNNRTG	2 cut(s)	609, 881
SaqAI	TTAA	4 cut(s)	315, 384, 456, 615
SatI	GCNGC	6 cut(s)	225, 807, 872, 939, 942, 1007
Sau3AI	GATC	3 cut(s)	569, 776, 854
Sau96I	GGNCC	3 cut(s)	348, 504, 505
ScaI	AGTACT	1 cut(s)	737
SchI	GAGTC	3 cut(s)	53, 66, 869
ScrFI	CCNGG	1 cut(s)	968
SduI	GDGCHC	3 cut(s)	12, 508, 606
SexAI	ACCWGGT	1 cut(s)	966
SfaNI	GCATC	3 cut(s)	315, 450, 993
SfcI	CTRYAG	1 cut(s)	1007
Sfr274I	CTCGAG	2 cut(s)	41, 168
SinI	GGWCC	1 cut(s)	348
SlaI	CTCGAG	2 cut(s)	41, 168
SmiMI	CAYNNNNRTG	2 cut(s)	609, 881
SmlI	CTYRAG	2 cut(s)	41, 168
SmoI	CTYRAG	2 cut(s)	41, 168
SphI	GCATGC	1 cut(s)	492
Sse9I	AATT	5 cut(s)	361, 451, 457, 800, 840
SsiI	CCGC	3 cut(s)	127, 248, 942
SspI	AATATT	1 cut(s)	957
SspMI	CTAG	1 cut(s)	561
StyD4I	CCNGG	1 cut(s)	966
TaaI	ACNGT	2 cut(s)	429, 880
TaqI	TCGA	5 cut(s)	42, 169, 203, 323, 753
TasI	AATT	5 cut(s)	361, 451, 457, 800, 840
TatI	WGTACW	1 cut(s)	735
TauI	GCSGC	1 cut(s)	944
TfiI	GAWTC	3 cut(s)	36, 302, 827
Tru1I	TTAA	4 cut(s)	315, 384, 456, 615
Tru9I	TTAA	4 cut(s)	315, 384, 456, 615
TscAI	CASTG	1 cut(s)	883
TseI	GCWGC	5 cut(s)	224, 806, 871, 938, 1006
TspDTI	ATGAA	4 cut(s)	46, 222, 885, 975
TspGWI	ACGGA	2 cut(s)	206, 564
TspRI	CASTG	1 cut(s)	883
VpaK11BI	GGWCC	1 cut(s)	348
XapI	RAATTY	2 cut(s)	451, 800
XceI	RCATGY	1 cut(s)	492
XhoI	CTCGAG	2 cut(s)	41, 168
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	1 cut(s)	561
ZrmI	AGTACT	1 cut(s)	737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.