Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009250

Physical Location & Seq

Genomic Coordinates Reverse (-)

39858658 .. 39862688

Gene Structure 4031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG233400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGCAAGTGCTCTCCAACACTCGCAGGCTCTCTAGAGTCCTCAAATCTCCAATCTTCATCTTCTCCGAACGACTCCTCGCTCCCGACGCGCCACTCGCCGAATCTCCACGCGCTCGTCTCCAATGGCGGAAGCTCCTCACCACTCTCTCTCCCCAACCCTCTGGCATTACTCGAGGTTGTTGTCTTTCGCCGACGGAGCAACACTCGATGATGGCATTTAGGGCAGCCTTTTCATCTGAGGGGAGTACGGTTGAAGCTATTCCCGCAGAGGCTGTGAAGGAGCTGTATGATAAAATGCTGGAATCTGTGAATGTTAAACGCTCGATGCCCCCTAATGCTTGGTTGTGGTCCTTGATTGAGAATTGCAAAAATCAGGATGATATTAAGCTTTTATTTGACATCTTGCAGAACCTGCGACGATTTAGACTGTCAAATCTACGCATCCATTCAAATTTTAATTGCAATCTCTGCCAAGAGGTTACCAAGGCATGTGCTCGCGTGGGGGCCCTCAACTTTGGAAAGAAGGGCTTGTGGAAACACAATGTGTACGGATTGACCCCTAGTATCGGATCTGCTCACCATTTACTGACATATGCTAAAGAGCACAATGATGTTAAACTTATGATGGATGTAATGACACTTTTGAAGGAGAATGACTTACCTTTGCAATCTGGTACAGCAGATAATGTTTTCAGCATTTGTTACAATACTGATAACTGGAAGTTGATGTCTAAGTACTCAAAGAGGTTTGTCGAGGCTGGAGTAAAGCTACGAAGATCTGCATTTGATGTCTGGATGGAATTCGCTGCTAAAATAGGAGATGTTGAATCCTTATGGGAAATTGAGAAGTTGAGATCTGAGTCTCAGAAGCAGCACACTGTTGTGAGTGGATTTTCATGTGCAAAGGGTTTACTGTTAGAGCATAAGCCTGAGGAAGCTGCTGCCGTCATTCAAATACTACTAAACCAGAATTTAACTGATGCAAAGAAGTCCAAGATTGTGGTTGAACTTCAAAAGTTGGTTAGTGAGTGGCCATTAGAGGTTATCAAGCGCCAAAAAGAAGAGGATAGGAAGGCATTAGCTGTATCTTTAAACTCTGATATTCCGGTGATGCTATCAAAGACTGGATTAGAGGTGAGTGTAAATATGGAGGACCTAGCCAGCAAAGAAGGCATTCTCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

394

Amino Acids

44.5

Weight (kDa)

8.93

Isoelectric Point (pI)

52.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21465 AT3G21465 AT4G15640 AT4G15640
fragaria_vesca	FvH4_4g17340 FvH4_4g17340
malus_domestica	MD13G1173000.v1.1 MD16G1174400.v1.1
prunus_persica	Prupe.1G141100_v2.0.a1
pyrus_communis	pycom13g14850 pycom16g14600
rosa_chinensis	RchiOBHm_Chr4g0421281 RchiOBHm_Chr4g0421901
rosa_laevigata	RLG00000007701
rosa_multiflora	Rmu_sc0007721.1_g000005
rosa_roxburghii	Rroxscaffold_5G00363510
rosa_rugosa	Rorug04G0169500
rosa_samantha	Rh4AG230400 Rh4BG233400 Rh4CG244600 Rh4DG229100
rosa_wichuraiana	Rw4G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	420
AccII	CGCG	3 cut(s)	89, 111, 498
AciI	CCGC	2 cut(s)	127, 264
AclWI	GGATC	1 cut(s)	577
AcoI	YGGCCR	1 cut(s)	1031
AcsI	RAATTY	3 cut(s)	451, 800, 970
AdeI	CACNNNGTG	1 cut(s)	544
AfaI	GTAC	4 cut(s)	247, 548, 676, 737
AfiI	CCNNNNNNNGG	1 cut(s)	566
AgsI	TTSAA	7 cut(s)	254, 450, 646, 827, 953, 1007, 1013
AleI	CACNNNNGTG	1 cut(s)	881
AluBI	AGCT	7 cut(s)	133, 257, 283, 388, 769, 938, 1082
AluI	AGCT	7 cut(s)	133, 257, 283, 388, 769, 938, 1082
Alw21I	GWGCWC	3 cut(s)	12, 496, 606
Alw26I	GTCTC	2 cut(s)	122, 867
AlwI	GGATC	1 cut(s)	577
AlwNI	CAGNNNCTG	2 cut(s)	272, 412
Ama87I	CYCGRG	1 cut(s)	171
AoxI	GGCC	2 cut(s)	504, 1031
ApaI	GGGCCC	1 cut(s)	508
ApeKI	GCWGC	5 cut(s)	224, 806, 871, 938, 941
ApoI	RAATTY	3 cut(s)	451, 800, 970
Asp700I	GAANNNNTTC	2 cut(s)	258, 1173
AspLEI	GCGC	3 cut(s)	91, 113, 1053
AspS9I	GGNCC	4 cut(s)	348, 504, 505, 1153
AsuHPI	GGTGA	4 cut(s)	130, 569, 1120, 1147
AvaI	CYCGRG	1 cut(s)	171
AvaII	GGWCC	2 cut(s)	348, 1153
AxyI	CCTNAGG	1 cut(s)	930
BaeGI	GKGCMC	1 cut(s)	508
BalI	TGGCCA	1 cut(s)	1033
BanII	GRGCYC	1 cut(s)	508
Bbv12I	GWGCWC	3 cut(s)	12, 496, 606
BbvI	GCAGC	5 cut(s)	236, 793, 883, 925, 928
BccI	CCATC	3 cut(s)	205, 619, 790
BceAI	ACGGC	1 cut(s)	929
BcoDI	GTCTC	2 cut(s)	122, 867
BfaI	CTAG	3 cut(s)	33, 561, 1157
BfoI	RGCGCY	1 cut(s)	1054
BfuAI	ACCTGC	1 cut(s)	420
BglII	AGATCT	2 cut(s)	776, 854
BisI	GCNGC	5 cut(s)	225, 807, 872, 939, 942
BlsI	GCNGC	5 cut(s)	226, 808, 873, 940, 943
BmcAI	AGTACT	1 cut(s)	737
Bme18I	GGWCC	2 cut(s)	348, 1153
BmeT110I	CYCGRG	1 cut(s)	171
BmgT120I	GGNCC	4 cut(s)	348, 504, 505, 1153
BmiI	GGNNCC	2 cut(s)	505, 506
BmsI	GCATC	4 cut(s)	315, 450, 970, 1101
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
BpmI	CTGGAG	1 cut(s)	780
BsaJI	CCNNGG	1 cut(s)	483
BsaWI	WCCGGW	1 cut(s)	1105
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bsc4I	CCNNNNNNNGG	1 cut(s)	566
Bse1I	ACTGG	2 cut(s)	722, 1129
Bse21I	CCTNAGG	1 cut(s)	930
BseDI	CCNNGG	1 cut(s)	483
BseGI	GGATG	4 cut(s)	382, 441, 634, 801
BseLI	CCNNNNNNNGG	1 cut(s)	566
BseMII	CTCAG	4 cut(s)	228, 849, 878, 921
BseNI	ACTGG	2 cut(s)	722, 1129
BseRI	GAGGAG	2 cut(s)	65, 125
BseSI	GKGCMC	1 cut(s)	508
BseXI	GCAGC	5 cut(s)	236, 793, 883, 925, 928
Bsh1236I	CGCG	3 cut(s)	89, 111, 498
BshFI	GGCC	2 cut(s)	506, 1033
BsiHKAI	GWGCWC	3 cut(s)	12, 496, 606
BsiHKCI	CYCGRG	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	1106
BslI	CCNNNNNNNGG	1 cut(s)	566
BsmAI	GTCTC	2 cut(s)	122, 867
BsmBI	CGTCTC	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	1173
BsnI	GGCC	2 cut(s)	506, 1033
BsoBI	CYCGRG	1 cut(s)	171
Bsp120I	GGGCCC	1 cut(s)	504
Bsp1286I	GDGCHC	4 cut(s)	12, 496, 508, 606
Bsp143I	GATC	3 cut(s)	569, 776, 854
BspACI	CCGC	2 cut(s)	127, 264
BspANI	GGCC	2 cut(s)	506, 1033
BspCNI	CTCAG	4 cut(s)	229, 850, 877, 922
BspFNI	CGCG	3 cut(s)	89, 111, 498
BspLI	GGNNCC	2 cut(s)	505, 506
BspMI	ACCTGC	1 cut(s)	420
BspPI	GGATC	1 cut(s)	577
BsrI	ACTGG	2 cut(s)	722, 1129
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	3 cut(s)	569, 776, 854
BssT1I	CCWWGG	1 cut(s)	483
Bst4CI	ACNGT	4 cut(s)	250, 429, 880, 915
Bst6I	CTCTTC	1 cut(s)	1056
BstAPI	GCANNNNNTGC	2 cut(s)	412, 468
BstC8I	GCNNGC	3 cut(s)	26, 496, 1162
BstDEI	CTNAG	5 cut(s)	237, 732, 858, 864, 930
BstEII	GGTNACC	1 cut(s)	478
BstF5I	GGATG	4 cut(s)	382, 441, 634, 801
BstFNI	CGCG	3 cut(s)	89, 111, 498
BstH2I	RGCGCY	1 cut(s)	1054
BstHHI	GCGC	3 cut(s)	91, 113, 1053
BstKTI	GATC	3 cut(s)	572, 779, 857
BstMAI	GTCTC	2 cut(s)	122, 867
BstMBI	GATC	3 cut(s)	569, 776, 854
BstMWI	GCNNNNNNNGC	8 cut(s)	86, 95, 196, 221, 263, 412, 468, 1170
BstNSI	RCATGY	1 cut(s)	492
BstPI	GGTNACC	1 cut(s)	478
BstSLI	GKGCMC	1 cut(s)	508
BstUI	CGCG	3 cut(s)	89, 111, 498
BstV1I	GCAGC	5 cut(s)	236, 793, 883, 925, 928
BstX2I	RGATCY	3 cut(s)	569, 776, 854
BstXI	CCANNNNNNTGG	2 cut(s)	161, 1000
BstYI	RGATCY	3 cut(s)	569, 776, 854
Bsu36I	CCTNAGG	1 cut(s)	930
BsuRI	GGCC	2 cut(s)	506, 1033
BtsCI	GGATG	4 cut(s)	382, 441, 634, 801
BtsIMutI	CAGTG	1 cut(s)	876
BveI	ACCTGC	1 cut(s)	420
Cac8I	GCNNGC	3 cut(s)	26, 496, 1162
CaiI	CAGNNNCTG	2 cut(s)	272, 412
CfoI	GCGC	3 cut(s)	91, 113, 1053
Cfr13I	GGNCC	4 cut(s)	348, 504, 505, 1153
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	4 cut(s)	246, 547, 675, 736
CviAII	CATG	2 cut(s)	489, 897
CviQI	GTAC	4 cut(s)	246, 547, 675, 736
DdeI	CTNAG	5 cut(s)	237, 732, 858, 864, 930
DpnI	GATC	3 cut(s)	571, 778, 856
DpnII	GATC	3 cut(s)	569, 776, 854
DraI	TTTAAA	1 cut(s)	1092
DraIII	CACNNNGTG	1 cut(s)	544
EaeI	YGGCCR	1 cut(s)	1031
Eam1104I	CTCTTC	1 cut(s)	1056
EarI	CTCTTC	1 cut(s)	1056
EciI	GGCGGA	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	483
Eco24I	GRGCYC	1 cut(s)	508
Eco47I	GGWCC	2 cut(s)	348, 1153
Eco81I	CCTNAGG	1 cut(s)	930
Eco88I	CYCGRG	1 cut(s)	171
Eco91I	GGTNACC	1 cut(s)	478
EcoO109I	RGGNCCY	3 cut(s)	504, 505, 1153
EcoO65I	GGTNACC	1 cut(s)	478
EcoRI	GAATTC	1 cut(s)	800
EcoT14I	CCWWGG	1 cut(s)	483
EcoT38I	GRGCYC	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	483
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	2 cut(s)	492, 900
FaiI	YATR	9 cut(s)	288, 490, 592, 594, 623, 835, 898, 924, 1148
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FatI	CATG	2 cut(s)	488, 896
FauI	CCCGC	1 cut(s)	271
FauNDI	CATATG	1 cut(s)	592
Fnu4HI	GCNGC	5 cut(s)	225, 807, 872, 939, 942
FokI	GGATG	4 cut(s)	389, 428, 641, 808
FriOI	GRGCYC	1 cut(s)	508
Fsp4HI	GCNGC	5 cut(s)	225, 807, 872, 939, 942
FspBI	CTAG	3 cut(s)	33, 561, 1157
GlaI	GCGC	3 cut(s)	90, 112, 1052
GluI	GCNGC	5 cut(s)	225, 807, 872, 939, 942
GsuI	CTGGAG	1 cut(s)	780
HaeII	RGCGCY	1 cut(s)	1054
HaeIII	GGCC	2 cut(s)	506, 1033
HapII	CCGG	1 cut(s)	1106
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	3 cut(s)	91, 113, 1053
Hin1II	CATG	2 cut(s)	492, 900
Hin6I	GCGC	3 cut(s)	89, 111, 1051
HinP1I	GCGC	3 cut(s)	89, 111, 1051
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	6 cut(s)	36, 72, 101, 302, 827, 860
HpaII	CCGG	1 cut(s)	1106
HphI	GGTGA	4 cut(s)	130, 569, 1120, 1147
Hpy166II	GTNNAC	2 cut(s)	547, 911
Hpy188I	TCNGA	6 cut(s)	67, 238, 569, 859, 867, 1099
Hpy188III	TCNNGA	4 cut(s)	33, 83, 374, 793
Hpy8I	GTNNAC	2 cut(s)	547, 911
Hpy99I	CGWCG	3 cut(s)	89, 196, 420
HpyAV	CCTTC	5 cut(s)	271, 517, 640, 1066, 1163
HpyCH4III	ACNGT	4 cut(s)	250, 429, 880, 915
HpyCH4V	TGCA	8 cut(s)	4, 366, 406, 462, 667, 782, 902, 983
HpyF10VI	GCNNNNNNNGC	8 cut(s)	86, 95, 196, 221, 263, 412, 468, 1170
HpyF3I	CTNAG	5 cut(s)	237, 732, 858, 864, 930
Hsp92II	CATG	2 cut(s)	492, 900
HspAI	GCGC	3 cut(s)	89, 111, 1051
Kzo9I	GATC	3 cut(s)	569, 776, 854
LmnI	GCTCC	4 cut(s)	85, 138, 196, 280
Lsp1109I	GCAGC	5 cut(s)	236, 793, 883, 925, 928
LweI	GCATC	4 cut(s)	315, 450, 970, 1101
MaeI	CTAG	3 cut(s)	33, 561, 1157
MaeIII	GTNAC	2 cut(s)	478, 701
MalI	GATC	3 cut(s)	571, 778, 856
MboI	GATC	3 cut(s)	569, 776, 854
MboII	GAAGA	4 cut(s)	46, 52, 786, 1073
MflI	RGATCY	3 cut(s)	569, 776, 854
MhlI	GDGCHC	4 cut(s)	12, 496, 508, 606
MlsI	TGGCCA	1 cut(s)	1033
MluCI	AATT	6 cut(s)	361, 451, 457, 800, 840, 970
MluNI	TGGCCA	1 cut(s)	1033
MlyI	GAGTC	3 cut(s)	45, 66, 869
MmeI	TCCRAC	1 cut(s)	39
Mox20I	TGGCCA	1 cut(s)	1033
MroXI	GAANNNNTTC	2 cut(s)	258, 1173
MscI	TGGCCA	1 cut(s)	1033
MseI	TTAA	6 cut(s)	315, 384, 456, 615, 974, 1091
MslI	CAYNNNNRTG	2 cut(s)	609, 881
Msp20I	TGGCCA	1 cut(s)	1033
MspI	CCGG	1 cut(s)	1106
Mva1269I	GAATGC	1 cut(s)	1173
MvnI	CGCG	3 cut(s)	89, 111, 498
MwoI	GCNNNNNNNGC	8 cut(s)	86, 95, 196, 221, 263, 412, 468, 1170
NdeI	CATATG	1 cut(s)	592
NdeII	GATC	3 cut(s)	569, 776, 854
NlaIII	CATG	2 cut(s)	492, 900
NlaIV	GGNNCC	2 cut(s)	505, 506
NspI	RCATGY	1 cut(s)	492
OliI	CACNNNNGTG	1 cut(s)	881
PaeR7I	CTCGAG	1 cut(s)	171
PctI	GAATGC	1 cut(s)	1173
PdmI	GAANNNNTTC	2 cut(s)	258, 1173
PfeI	GAWTC	3 cut(s)	101, 302, 827
PkrI	GCNGC	5 cut(s)	226, 808, 873, 940, 943
PleI	GAGTC	3 cut(s)	44, 66, 868
PpsI	GAGTC	3 cut(s)	44, 66, 868
PpuMI	RGGWCCY	1 cut(s)	1153
Psp5II	RGGWCCY	1 cut(s)	1153
PspEI	GGTNACC	1 cut(s)	478
PspN4I	GGNNCC	2 cut(s)	505, 506
PspOMI	GGGCCC	1 cut(s)	504
PspPI	GGNCC	4 cut(s)	348, 504, 505, 1153
PspPPI	RGGWCCY	1 cut(s)	1153
PspXI	VCTCGAGB	1 cut(s)	171
PstNI	CAGNNNCTG	2 cut(s)	272, 412
PsuI	RGATCY	3 cut(s)	569, 776, 854
RsaI	GTAC	4 cut(s)	247, 548, 676, 737
RsaNI	GTAC	4 cut(s)	246, 547, 675, 736
RseI	CAYNNNNRTG	2 cut(s)	609, 881
SaqAI	TTAA	6 cut(s)	315, 384, 456, 615, 974, 1091
SatI	GCNGC	5 cut(s)	225, 807, 872, 939, 942
Sau3AI	GATC	3 cut(s)	569, 776, 854
Sau96I	GGNCC	4 cut(s)	348, 504, 505, 1153
ScaI	AGTACT	1 cut(s)	737
SchI	GAGTC	3 cut(s)	45, 66, 869
SduI	GDGCHC	4 cut(s)	12, 496, 508, 606
SfaNI	GCATC	4 cut(s)	315, 450, 970, 1101
Sfr274I	CTCGAG	1 cut(s)	171
SinI	GGWCC	2 cut(s)	348, 1153
SlaI	CTCGAG	1 cut(s)	171
SmiMI	CAYNNNNRTG	2 cut(s)	609, 881
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
Sse9I	AATT	6 cut(s)	361, 451, 457, 800, 840, 970
SsiI	CCGC	2 cut(s)	127, 264
SspMI	CTAG	3 cut(s)	33, 561, 1157
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	4 cut(s)	250, 429, 880, 915
TaqI	TCGA	4 cut(s)	172, 206, 323, 753
TasI	AATT	6 cut(s)	361, 451, 457, 800, 840, 970
TatI	WGTACW	1 cut(s)	735
TfiI	GAWTC	3 cut(s)	101, 302, 827
Tru1I	TTAA	6 cut(s)	315, 384, 456, 615, 974, 1091
Tru9I	TTAA	6 cut(s)	315, 384, 456, 615, 974, 1091
TscAI	CASTG	1 cut(s)	883
TseI	GCWGC	5 cut(s)	224, 806, 871, 938, 941
TspDTI	ATGAA	3 cut(s)	46, 222, 885
TspGWI	ACGGA	2 cut(s)	209, 564
TspRI	CASTG	1 cut(s)	883
VpaK11BI	GGWCC	2 cut(s)	348, 1153
XapI	RAATTY	3 cut(s)	451, 800, 970
XbaI	TCTAGA	1 cut(s)	32
XceI	RCATGY	1 cut(s)	492
XhoI	CTCGAG	1 cut(s)	171
XmnI	GAANNNNTTC	2 cut(s)	258, 1173
XspI	CTAG	3 cut(s)	33, 561, 1157
ZrmI	AGTACT	1 cut(s)	737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.