RchiOBHm_Chr4g0421901

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0009250
Physical Location & Seq
Reverse (-)
47582422 .. 47584047
1626 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39151

Sequence Viewer

Length: 726 bp
ATGCAAGTACTCTCCAACACTCGCTGGCTCTCCAGAGTCCTCAAGTCTCCAATCTTCATCGATCTTCTCCGAACGACTCCTCGCTCCCGACGCGCTTGTCTCCAATGGCGGAAGTTCACCACTCTCTCTCTCTCGCACCCTTTTCATCTGAGGCGAGTGCGGTTGAAGCTATCCCCACAGGCTGTGAAGGCGCTGTACGATAGAATGGTGGAATCTGTGAATGTTAAACGCTCGATGCCCCCTAATGCTTGGTTGTGGTCCTTGATTGAGAATTGCAAAAATCAGGATGATATTAAGCTTTTATTTGACATCTTACTGTCAAATCTACGCATCCATTCGAATTTTAGTTGCAATCTCTGCCAAGAGGGTACTAAGGCATGCGCTCGTGTGGGGGCCCTCAACTTTGGTACAATGTACCAATATGCTGTTTATATGACTGAATTTTGTTTATTTGTTTGTTTTTTTTTCTCTCTCCCCCCCCCCTCAGTTGTTAATATGCAAAGAAAGAAGGGCTTGTGGAAACACAATGTGTACGGATTGACCCCTAGTATCGGATCTGCTCACCATTTACTGACATATGCTAAAGAGCACAATGATGTTAAACTTATGATGGATGTAATGACACTTTTGAAGGAGAATGACTTACCCTTGCAATCTGGTACAGCAGATATTGTTTTCAGCATTTGTTACAATACTGATAACTGGAAGTTGATGTCTAAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

28.0

Weight (kDa)

9.65

Isoelectric Point (pI)

56.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 96
AccII CGCG 1 cut(s) 93
AciI CCGC 2 cut(s) 109, 160
AclWI GGATC 1 cut(s) 562
AcsI RAATTY 2 cut(s) 340, 440
AdeI CACNNNGTG 1 cut(s) 529
AfaI GTAC 7 cut(s) 9, 197, 370, 409, 416, 533, 661
AfiI CCNNNNNNNGG 1 cut(s) 551
AgsI TTSAA 2 cut(s) 166, 631
AluBI AGCT 2 cut(s) 169, 298
AluI AGCT 2 cut(s) 169, 298
Alw21I GWGCWC 1 cut(s) 591
Alw26I GTCTC 2 cut(s) 51, 104
AlwI GGATC 1 cut(s) 562
AoxI GGCC 1 cut(s) 393
ApaI GGGCCC 1 cut(s) 397
ApoI RAATTY 2 cut(s) 340, 440
AspLEI GCGC 3 cut(s) 95, 193, 383
AspS9I GGNCC 3 cut(s) 258, 393, 394
AsuHPI GGTGA 2 cut(s) 109, 554
AsuII TTCGAA 1 cut(s) 338
AvaII GGWCC 1 cut(s) 258
BaeGI GKGCMC 1 cut(s) 397
BanII GRGCYC 1 cut(s) 397
BarI GAAGNNNNNNTAC 2 cut(s) 179, 211
BauI CACGAG 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 591
BccI CCATC 1 cut(s) 604
BcoDI GTCTC 2 cut(s) 51, 104
BfaI CTAG 1 cut(s) 546
BfoI RGCGCY 1 cut(s) 194
BmcAI AGTACT 1 cut(s) 9
Bme18I GGWCC 1 cut(s) 258
BmgT120I GGNCC 3 cut(s) 258, 393, 394
BmiI GGNNCC 2 cut(s) 394, 395
BmsI GCATC 2 cut(s) 225, 339
BpmI CTGGAG 1 cut(s) 16
Bpu14I TTCGAA 1 cut(s) 338
BpuEI CTTGAG 1 cut(s) 26
Bsa29I ATCGAT 1 cut(s) 60
Bsc4I CCNNNNNNNGG 1 cut(s) 551
Bse1I ACTGG 1 cut(s) 707
BseCI ATCGAT 1 cut(s) 60
BseGI GGATG 3 cut(s) 292, 330, 619
BseLI CCNNNNNNNGG 1 cut(s) 551
BseMII CTCAG 2 cut(s) 140, 498
BseNI ACTGG 1 cut(s) 707
BseRI GAGGAG 1 cut(s) 69
BseSI GKGCMC 1 cut(s) 397
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 395
BshVI ATCGAT 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 591
BslI CCNNNNNNNGG 1 cut(s) 551
BsmAI GTCTC 2 cut(s) 51, 104
BsnI GGCC 1 cut(s) 395
Bsp119I TTCGAA 1 cut(s) 338
Bsp120I GGGCCC 1 cut(s) 393
Bsp1286I GDGCHC 2 cut(s) 397, 591
Bsp143I GATC 2 cut(s) 61, 554
BspACI CCGC 2 cut(s) 109, 160
BspANI GGCC 1 cut(s) 395
BspCNI CTCAG 2 cut(s) 141, 497
BspDI ATCGAT 1 cut(s) 60
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 394, 395
BspPI GGATC 1 cut(s) 562
BspT104I TTCGAA 1 cut(s) 338
BsrI ACTGG 1 cut(s) 707
BssMI GATC 2 cut(s) 61, 554
BssSI CACGAG 1 cut(s) 384
Bst2BI CACGAG 1 cut(s) 384
Bst4CI ACNGT 1 cut(s) 318
BstAPI GCANNNNNTGC 1 cut(s) 357
BstBI TTCGAA 1 cut(s) 338
BstC8I GCNNGC 2 cut(s) 26, 379
BstDEI CTNAG 4 cut(s) 149, 372, 484, 717
BstF5I GGATG 3 cut(s) 292, 330, 619
BstFNI CGCG 1 cut(s) 93
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 3 cut(s) 95, 193, 383
BstKTI GATC 2 cut(s) 64, 557
BstMAI GTCTC 2 cut(s) 51, 104
BstMBI GATC 2 cut(s) 61, 554
BstMWI GCNNNNNNNGC 4 cut(s) 90, 166, 188, 357
BstNSI RCATGY 1 cut(s) 381
BstSLI GKGCMC 1 cut(s) 397
BstUI CGCG 1 cut(s) 93
BstX2I RGATCY 1 cut(s) 554
BstYI RGATCY 1 cut(s) 554
Bsu15I ATCGAT 1 cut(s) 60
BsuRI GGCC 1 cut(s) 395
BsuTUI ATCGAT 1 cut(s) 60
BtsCI GGATG 3 cut(s) 292, 330, 619
Cac8I GCNNGC 2 cut(s) 26, 379
CfoI GCGC 3 cut(s) 95, 193, 383
Cfr13I GGNCC 3 cut(s) 258, 393, 394
ClaI ATCGAT 1 cut(s) 60
CseI GACGC 1 cut(s) 99
Csp6I GTAC 7 cut(s) 8, 196, 369, 408, 415, 532, 660
CviAII CATG 1 cut(s) 378
CviJI RGCY 6 cut(s) 28, 169, 182, 298, 395, 513
CviKI_1 RGCY 6 cut(s) 28, 169, 182, 298, 395, 513
CviQI GTAC 7 cut(s) 8, 196, 369, 408, 415, 532, 660
DdeI CTNAG 4 cut(s) 149, 372, 484, 717
DpnI GATC 2 cut(s) 63, 556
DpnII GATC 2 cut(s) 61, 554
DraIII CACNNNGTG 1 cut(s) 529
DrdI GACNNNNNNGTC 1 cut(s) 96
DseDI GACNNNNNNGTC 1 cut(s) 96
EciI GGCGGA 1 cut(s) 124
Eco24I GRGCYC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 258
EcoO109I RGGNCCY 2 cut(s) 393, 394
EcoT38I GRGCYC 1 cut(s) 397
FaeI CATG 1 cut(s) 381
FaiI YATR 8 cut(s) 379, 423, 432, 434, 497, 577, 579, 608
FalI AAGNNNNNCTT 2 cut(s) 497, 529
FatI CATG 1 cut(s) 377
FauNDI CATATG 1 cut(s) 577
FokI GGATG 3 cut(s) 299, 317, 626
FriOI GRGCYC 1 cut(s) 397
FspBI CTAG 1 cut(s) 546
GlaI GCGC 3 cut(s) 94, 192, 382
GsuI CTGGAG 1 cut(s) 16
HaeII RGCGCY 1 cut(s) 194
HaeIII GGCC 1 cut(s) 395
HgaI GACGC 1 cut(s) 99
HhaI GCGC 3 cut(s) 95, 193, 383
Hin1II CATG 1 cut(s) 381
Hin6I GCGC 3 cut(s) 93, 191, 381
HinP1I GCGC 3 cut(s) 93, 191, 381
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 3 cut(s) 36, 76, 212
HphI GGTGA 2 cut(s) 109, 554
Hpy166II GTNNAC 2 cut(s) 117, 532
Hpy188I TCNGA 3 cut(s) 71, 150, 554
Hpy188III TCNNGA 3 cut(s) 33, 87, 284
Hpy8I GTNNAC 2 cut(s) 117, 532
Hpy99I CGWCG 1 cut(s) 93
HpyAV CCTTC 3 cut(s) 181, 502, 625
HpyCH4III ACNGT 1 cut(s) 318
HpyCH4V TGCA 5 cut(s) 4, 276, 351, 499, 652
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 166, 188, 357
HpyF3I CTNAG 4 cut(s) 149, 372, 484, 717
Hsp92II CATG 1 cut(s) 381
HspAI GCGC 3 cut(s) 93, 191, 381
Kzo9I GATC 2 cut(s) 61, 554
LmnI GCTCC 1 cut(s) 89
LpnPI CCDG 6 cut(s) 10, 46, 164, 269, 642, 688
LweI GCATC 2 cut(s) 225, 339
MaeI CTAG 1 cut(s) 546
MaeIII GTNAC 1 cut(s) 686
MalI GATC 2 cut(s) 63, 556
MboI GATC 2 cut(s) 61, 554
MboII GAAGA 2 cut(s) 46, 56
MflI RGATCY 1 cut(s) 554
MhlI GDGCHC 2 cut(s) 397, 591
MluCI AATT 3 cut(s) 271, 340, 440
MlyI GAGTC 2 cut(s) 45, 70
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 6 cut(s) 50, 90, 144, 358, 407, 493
MseI TTAA 4 cut(s) 225, 294, 492, 600
MslI CAYNNNNRTG 1 cut(s) 594
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 4 cut(s) 90, 166, 188, 357
NdeI CATATG 1 cut(s) 577
NdeII GATC 2 cut(s) 61, 554
NlaIII CATG 1 cut(s) 381
NlaIV GGNNCC 2 cut(s) 394, 395
NspI RCATGY 1 cut(s) 381
NspV TTCGAA 1 cut(s) 338
PaeI GCATGC 1 cut(s) 381
PfeI GAWTC 1 cut(s) 212
PleI GAGTC 2 cut(s) 44, 70
PpsI GAGTC 2 cut(s) 44, 70
PspN4I GGNNCC 2 cut(s) 394, 395
PspOMI GGGCCC 1 cut(s) 393
PspPI GGNCC 3 cut(s) 258, 393, 394
PsuI RGATCY 1 cut(s) 554
RsaI GTAC 7 cut(s) 9, 197, 370, 409, 416, 533, 661
RsaNI GTAC 7 cut(s) 8, 196, 369, 408, 415, 532, 660
RseI CAYNNNNRTG 1 cut(s) 594
SaqAI TTAA 4 cut(s) 225, 294, 492, 600
Sau3AI GATC 2 cut(s) 61, 554
Sau96I GGNCC 3 cut(s) 258, 393, 394
ScaI AGTACT 1 cut(s) 9
SchI GAGTC 2 cut(s) 45, 70
SduI GDGCHC 2 cut(s) 397, 591
SetI ASST 2 cut(s) 171, 300
SfaNI GCATC 2 cut(s) 225, 339
SfuI TTCGAA 1 cut(s) 338
SinI GGWCC 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 594
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SphI GCATGC 1 cut(s) 381
Sse9I AATT 3 cut(s) 271, 340, 440
SsiI CCGC 2 cut(s) 109, 160
SspMI CTAG 1 cut(s) 546
TaaI ACNGT 1 cut(s) 318
TaqI TCGA 3 cut(s) 60, 233, 338
TasI AATT 3 cut(s) 271, 340, 440
TatI WGTACW 1 cut(s) 7
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 4 cut(s) 225, 294, 492, 600
Tru9I TTAA 4 cut(s) 225, 294, 492, 600
TspDTI ATGAA 2 cut(s) 46, 134
TspGWI ACGGA 1 cut(s) 549
VpaK11BI GGWCC 1 cut(s) 258
XapI RAATTY 2 cut(s) 340, 440
XceI RCATGY 1 cut(s) 381
XspI CTAG 1 cut(s) 546
ZrmI AGTACT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.