Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009250

Physical Location & Seq

Genomic Coordinates Forward (+)

20044752 .. 20047971

Gene Structure 3220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007701

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGCAAGTGCTCTCCAACACTCGCAGGCTCTCCAGAGTCCTCAAGTCTCCAATCTTCATCTTCTCCGAACGACTCGTCGCTCCCGACGCGCCACTCGCCGAATCTCCACGCGCTTGTCTTCAATGGCGGAAGCTCACCACTCTCTCTCCCCAACCCTCTGGCATTACTCGAGGTTGTTGTCTTTCGCCGACGGAGCAACACTCGATGATGGCATTTAGGGCAGCCTTTTCATCTGAGGGGAGTACGGTTGAAGCTAGTCCCACAGAGGCTGTGAAGGAGCTGTATGATAAAATGCTGGAATCTGTGAATGTTAAACGCTCGATGCCCCCTAATGCTTGGTTGTGGTCCTTGATTGAGAATTGCAAAAATCAGGATGATATTAAGCTTTTATTTGACATCTTGCAGAACCTTCGACGATTTAGACTGTCAAATCTACGCATCCATTCAAATTTTAATTGCAATCTCTGCCAAGAGGTTACCAAGGCATGCGCTCGCGTGGGGGCCCTCAACTTTGGAAAGAAGGGCTTGTGGAAACACAATGTGTACGGATTGACCCCTAGTATCGGATCTGCTCACCATTTACTGACATATGCTAAAGAGCACAATGATGTTAAACTTATGGTGGATGTAATGACACTTTTGAAGGAGAATGTCTTACCTTTGCAATCTGGTACAGCAGATATTGTTTTCAGCATTTGTTACAATACTGATAACTGGAAGTTGATGTCTAAGTACTCAAAGAGGTTTGTCGAGGCTGGAGTAAAGCTACGAAGATCTGCATTTGATGTCTGGATGGAATTCGCTGCTAAAATAGGAGATGTTGAATCCTTATGGGAAATTGAGAAGTTGAGATCTGAGTCTCAGAAGCAGCACACTGTTGTGAGTGGATTTTCATGTGCAAAGGGTTTACTATTAGAGCATAAGCCTGAGGAAGCTGCCGCCGTCATTCAAATACTACTAAACCAGAATTTAACTGATGCAAAGAAGTCCAAGATTGCGGTTGAACTTCAAAAGTTGGTTAGTGAGTGGCCATTAGAGGTTATCAAGTGCCAAAAAGAAGAGGATAGGAAGGCATTAGCTGTATCTTTAAACTCTGATATTCCGGTGATGCTATCAACGACTGGATTAGAGGTGAGTGTAAATATGGAGGACCTAACCAGCAAAGAAGGCATTCTCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

394

Amino Acids

44.2

Weight (kDa)

8.66

Isoelectric Point (pI)

53.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21465 AT3G21465 AT4G15640 AT4G15640
fragaria_vesca	FvH4_4g17340 FvH4_4g17340
malus_domestica	MD13G1173000.v1.1 MD16G1174400.v1.1
prunus_persica	Prupe.1G141100_v2.0.a1
pyrus_communis	pycom13g14850 pycom16g14600
rosa_chinensis	RchiOBHm_Chr4g0421281 RchiOBHm_Chr4g0421901
rosa_laevigata	RLG00000007701
rosa_multiflora	Rmu_sc0007721.1_g000005
rosa_roxburghii	Rroxscaffold_5G00363510
rosa_rugosa	Rorug04G0169500
rosa_samantha	Rh4AG230400 Rh4BG233400 Rh4CG244600 Rh4DG229100
rosa_wichuraiana	Rw4G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	89, 111, 495
AciI	CCGC	3 cut(s)	127, 939, 998
AclWI	GGATC	1 cut(s)	574
AcoI	YGGCCR	1 cut(s)	1028
AcsI	RAATTY	3 cut(s)	448, 797, 967
AdeI	CACNNNGTG	1 cut(s)	541
AfaI	GTAC	4 cut(s)	244, 545, 673, 734
AfiI	CCNNNNNNNGG	1 cut(s)	563
AgsI	TTSAA	8 cut(s)	122, 251, 447, 643, 824, 950, 1004, 1010
AleI	CACNNNNGTG	1 cut(s)	878
AluBI	AGCT	7 cut(s)	133, 254, 280, 385, 766, 935, 1079
AluI	AGCT	7 cut(s)	133, 254, 280, 385, 766, 935, 1079
Alw21I	GWGCWC	2 cut(s)	12, 603
Alw26I	GTCTC	2 cut(s)	51, 864
AlwI	GGATC	1 cut(s)	574
AlwNI	CAGNNNCTG	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	168
AoxI	GGCC	2 cut(s)	501, 1028
ApaI	GGGCCC	1 cut(s)	505
ApeKI	GCWGC	4 cut(s)	221, 803, 868, 935
ApoI	RAATTY	3 cut(s)	448, 797, 967
ArsI	GACNNNNNNTTYG	2 cut(s)	60, 92
Asp700I	GAANNNNTTC	1 cut(s)	1170
AspLEI	GCGC	3 cut(s)	91, 113, 491
AspS9I	GGNCC	4 cut(s)	345, 501, 502, 1150
AsuHPI	GGTGA	4 cut(s)	127, 566, 1117, 1144
AvaI	CYCGRG	1 cut(s)	168
AvaII	GGWCC	2 cut(s)	345, 1150
AxyI	CCTNAGG	1 cut(s)	927
BaeGI	GKGCMC	1 cut(s)	505
BalI	TGGCCA	1 cut(s)	1030
BanII	GRGCYC	1 cut(s)	505
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	2 cut(s)	12, 603
BbvI	GCAGC	4 cut(s)	233, 790, 880, 922
BccI	CCATC	2 cut(s)	202, 787
BceAI	ACGGC	1 cut(s)	926
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BcoDI	GTCTC	2 cut(s)	51, 864
BfaI	CTAG	2 cut(s)	255, 558
BglII	AGATCT	2 cut(s)	773, 851
BisI	GCNGC	5 cut(s)	222, 804, 869, 936, 939
BlsI	GCNGC	5 cut(s)	223, 805, 870, 937, 940
BmcAI	AGTACT	1 cut(s)	734
Bme18I	GGWCC	2 cut(s)	345, 1150
BmeT110I	CYCGRG	1 cut(s)	168
BmgT120I	GGNCC	4 cut(s)	345, 501, 502, 1150
BmiI	GGNNCC	2 cut(s)	502, 503
BmsI	GCATC	4 cut(s)	312, 447, 967, 1098
BpiI	GAAGAC	1 cut(s)	110
BplI	GAGNNNNNCTC	2 cut(s)	185, 217
BpmI	CTGGAG	2 cut(s)	16, 777
BpuEI	CTTGAG	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	480
BsaWI	WCCGGW	1 cut(s)	1102
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	1 cut(s)	563
Bse1I	ACTGG	2 cut(s)	719, 1126
Bse21I	CCTNAGG	1 cut(s)	927
BseDI	CCNNGG	1 cut(s)	480
BseGI	GGATG	4 cut(s)	379, 438, 631, 798
BseLI	CCNNNNNNNGG	1 cut(s)	563
BseMII	CTCAG	4 cut(s)	225, 846, 875, 918
BseNI	ACTGG	2 cut(s)	719, 1126
BseSI	GKGCMC	1 cut(s)	505
BseXI	GCAGC	4 cut(s)	233, 790, 880, 922
Bsh1236I	CGCG	3 cut(s)	89, 111, 495
BshFI	GGCC	2 cut(s)	503, 1030
BsiHKAI	GWGCWC	2 cut(s)	12, 603
BsiHKCI	CYCGRG	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	1103
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	563
BsmAI	GTCTC	2 cut(s)	51, 864
BsmFI	GGGAC	1 cut(s)	243
BsmI	GAATGC	1 cut(s)	1170
BsnI	GGCC	2 cut(s)	503, 1030
BsoBI	CYCGRG	1 cut(s)	168
Bsp120I	GGGCCC	1 cut(s)	501
Bsp1286I	GDGCHC	3 cut(s)	12, 505, 603
Bsp143I	GATC	3 cut(s)	566, 773, 851
BspACI	CCGC	3 cut(s)	127, 939, 998
BspANI	GGCC	2 cut(s)	503, 1030
BspCNI	CTCAG	4 cut(s)	226, 847, 874, 919
BspFNI	CGCG	3 cut(s)	89, 111, 495
BspLI	GGNNCC	2 cut(s)	502, 503
BspPI	GGATC	1 cut(s)	574
BsrI	ACTGG	2 cut(s)	719, 1126
BssECI	CCNNGG	1 cut(s)	480
BssMI	GATC	3 cut(s)	566, 773, 851
BssT1I	CCWWGG	1 cut(s)	480
Bst4CI	ACNGT	3 cut(s)	247, 426, 877
Bst6I	CTCTTC	1 cut(s)	1053
BstAPI	GCANNNNNTGC	1 cut(s)	465
BstC8I	GCNNGC	3 cut(s)	26, 487, 493
BstDEI	CTNAG	5 cut(s)	234, 729, 855, 861, 927
BstEII	GGTNACC	1 cut(s)	475
BstF5I	GGATG	4 cut(s)	379, 438, 631, 798
BstFNI	CGCG	3 cut(s)	89, 111, 495
BstHHI	GCGC	3 cut(s)	91, 113, 491
BstKTI	GATC	3 cut(s)	569, 776, 854
BstMAI	GTCTC	2 cut(s)	51, 864
BstMBI	GATC	3 cut(s)	566, 773, 851
BstMWI	GCNNNNNNNGC	6 cut(s)	86, 95, 193, 218, 465, 1167
BstNSI	RCATGY	1 cut(s)	489
BstPI	GGTNACC	1 cut(s)	475
BstSLI	GKGCMC	1 cut(s)	505
BstUI	CGCG	3 cut(s)	89, 111, 495
BstV1I	GCAGC	4 cut(s)	233, 790, 880, 922
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	3 cut(s)	566, 773, 851
BstXI	CCANNNNNNTGG	1 cut(s)	158
BstYI	RGATCY	3 cut(s)	566, 773, 851
Bsu36I	CCTNAGG	1 cut(s)	927
BsuRI	GGCC	2 cut(s)	503, 1030
BtsCI	GGATG	4 cut(s)	379, 438, 631, 798
BtsIMutI	CAGTG	1 cut(s)	873
Cac8I	GCNNGC	3 cut(s)	26, 487, 493
CaiI	CAGNNNCTG	1 cut(s)	269
CfoI	GCGC	3 cut(s)	91, 113, 491
Cfr13I	GGNCC	4 cut(s)	345, 501, 502, 1150
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	4 cut(s)	243, 544, 672, 733
CviAII	CATG	2 cut(s)	486, 894
CviQI	GTAC	4 cut(s)	243, 544, 672, 733
DdeI	CTNAG	5 cut(s)	234, 729, 855, 861, 927
DpnI	GATC	3 cut(s)	568, 775, 853
DpnII	GATC	3 cut(s)	566, 773, 851
DraI	TTTAAA	1 cut(s)	1089
DraIII	CACNNNGTG	1 cut(s)	541
EaeI	YGGCCR	1 cut(s)	1028
Eam1104I	CTCTTC	1 cut(s)	1053
EarI	CTCTTC	1 cut(s)	1053
EciI	GGCGGA	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	480
Eco24I	GRGCYC	1 cut(s)	505
Eco47I	GGWCC	2 cut(s)	345, 1150
Eco81I	CCTNAGG	1 cut(s)	927
Eco88I	CYCGRG	1 cut(s)	168
Eco91I	GGTNACC	1 cut(s)	475
EcoO109I	RGGNCCY	3 cut(s)	501, 502, 1150
EcoO65I	GGTNACC	1 cut(s)	475
EcoRI	GAATTC	1 cut(s)	797
EcoT14I	CCWWGG	1 cut(s)	480
EcoT38I	GRGCYC	1 cut(s)	505
ErhI	CCWWGG	1 cut(s)	480
FaeI	CATG	2 cut(s)	489, 897
FaiI	YATR	9 cut(s)	285, 487, 589, 591, 620, 832, 895, 921, 1145
FalI	AAGNNNNNCTT	2 cut(s)	509, 541
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	2 cut(s)	485, 893
FauNDI	CATATG	1 cut(s)	589
Fnu4HI	GCNGC	5 cut(s)	222, 804, 869, 936, 939
FokI	GGATG	4 cut(s)	386, 425, 638, 805
FriOI	GRGCYC	1 cut(s)	505
Fsp4HI	GCNGC	5 cut(s)	222, 804, 869, 936, 939
FspBI	CTAG	2 cut(s)	255, 558
GlaI	GCGC	3 cut(s)	90, 112, 490
GluI	GCNGC	5 cut(s)	222, 804, 869, 936, 939
GsuI	CTGGAG	2 cut(s)	16, 777
HaeIII	GGCC	2 cut(s)	503, 1030
HapII	CCGG	1 cut(s)	1103
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	3 cut(s)	91, 113, 491
Hin1II	CATG	2 cut(s)	489, 897
Hin6I	GCGC	3 cut(s)	89, 111, 489
HinP1I	GCGC	3 cut(s)	89, 111, 489
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	6 cut(s)	36, 72, 101, 299, 824, 857
HpaII	CCGG	1 cut(s)	1103
HphI	GGTGA	4 cut(s)	127, 566, 1117, 1144
Hpy166II	GTNNAC	2 cut(s)	544, 908
Hpy188I	TCNGA	6 cut(s)	67, 235, 566, 856, 864, 1096
Hpy188III	TCNNGA	4 cut(s)	33, 83, 371, 790
Hpy8I	GTNNAC	2 cut(s)	544, 908
Hpy99I	CGWCG	4 cut(s)	80, 89, 193, 417
HpyAV	CCTTC	6 cut(s)	268, 419, 514, 637, 1063, 1160
HpyCH4III	ACNGT	3 cut(s)	247, 426, 877
HpyCH4V	TGCA	8 cut(s)	4, 363, 403, 459, 664, 779, 899, 980
HpyF10VI	GCNNNNNNNGC	6 cut(s)	86, 95, 193, 218, 465, 1167
HpyF3I	CTNAG	5 cut(s)	234, 729, 855, 861, 927
Hsp92II	CATG	2 cut(s)	489, 897
HspAI	GCGC	3 cut(s)	89, 111, 489
Kzo9I	GATC	3 cut(s)	566, 773, 851
LmnI	GCTCC	3 cut(s)	85, 193, 277
Lsp1109I	GCAGC	4 cut(s)	233, 790, 880, 922
LweI	GCATC	4 cut(s)	312, 447, 967, 1098
MaeI	CTAG	2 cut(s)	255, 558
MaeIII	GTNAC	2 cut(s)	475, 698
MalI	GATC	3 cut(s)	568, 775, 853
MboI	GATC	3 cut(s)	566, 773, 851
MboII	GAAGA	5 cut(s)	46, 52, 110, 783, 1070
MflI	RGATCY	3 cut(s)	566, 773, 851
MhlI	GDGCHC	3 cut(s)	12, 505, 603
MlsI	TGGCCA	1 cut(s)	1030
MluCI	AATT	6 cut(s)	358, 448, 454, 797, 837, 967
MluNI	TGGCCA	1 cut(s)	1030
MlyI	GAGTC	3 cut(s)	45, 66, 866
MmeI	TCCRAC	1 cut(s)	39
Mox20I	TGGCCA	1 cut(s)	1030
MroXI	GAANNNNTTC	1 cut(s)	1170
MscI	TGGCCA	1 cut(s)	1030
MseI	TTAA	6 cut(s)	312, 381, 453, 612, 971, 1088
MslI	CAYNNNNRTG	2 cut(s)	606, 878
Msp20I	TGGCCA	1 cut(s)	1030
MspI	CCGG	1 cut(s)	1103
Mva1269I	GAATGC	1 cut(s)	1170
MvnI	CGCG	3 cut(s)	89, 111, 495
MwoI	GCNNNNNNNGC	6 cut(s)	86, 95, 193, 218, 465, 1167
NdeI	CATATG	1 cut(s)	589
NdeII	GATC	3 cut(s)	566, 773, 851
NlaIII	CATG	2 cut(s)	489, 897
NlaIV	GGNNCC	2 cut(s)	502, 503
NspI	RCATGY	1 cut(s)	489
OliI	CACNNNNGTG	1 cut(s)	878
PaeI	GCATGC	1 cut(s)	489
PaeR7I	CTCGAG	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PctI	GAATGC	1 cut(s)	1170
PdmI	GAANNNNTTC	1 cut(s)	1170
PfeI	GAWTC	3 cut(s)	101, 299, 824
PkrI	GCNGC	5 cut(s)	223, 805, 870, 937, 940
PleI	GAGTC	3 cut(s)	44, 66, 865
PpsI	GAGTC	3 cut(s)	44, 66, 865
PpuMI	RGGWCCY	1 cut(s)	1150
Psp5II	RGGWCCY	1 cut(s)	1150
PspEI	GGTNACC	1 cut(s)	475
PspN4I	GGNNCC	2 cut(s)	502, 503
PspOMI	GGGCCC	1 cut(s)	501
PspPI	GGNCC	4 cut(s)	345, 501, 502, 1150
PspPPI	RGGWCCY	1 cut(s)	1150
PspXI	VCTCGAGB	1 cut(s)	168
PstNI	CAGNNNCTG	1 cut(s)	269
PsuI	RGATCY	3 cut(s)	566, 773, 851
RsaI	GTAC	4 cut(s)	244, 545, 673, 734
RsaNI	GTAC	4 cut(s)	243, 544, 672, 733
RseI	CAYNNNNRTG	2 cut(s)	606, 878
SaqAI	TTAA	6 cut(s)	312, 381, 453, 612, 971, 1088
SatI	GCNGC	5 cut(s)	222, 804, 869, 936, 939
Sau3AI	GATC	3 cut(s)	566, 773, 851
Sau96I	GGNCC	4 cut(s)	345, 501, 502, 1150
ScaI	AGTACT	1 cut(s)	734
SchI	GAGTC	3 cut(s)	45, 66, 866
SduI	GDGCHC	3 cut(s)	12, 505, 603
SfaNI	GCATC	4 cut(s)	312, 447, 967, 1098
Sfr274I	CTCGAG	1 cut(s)	168
SinI	GGWCC	2 cut(s)	345, 1150
SlaI	CTCGAG	1 cut(s)	168
SmiMI	CAYNNNNRTG	2 cut(s)	606, 878
SmlI	CTYRAG	2 cut(s)	41, 168
SmoI	CTYRAG	2 cut(s)	41, 168
SphI	GCATGC	1 cut(s)	489
Sse9I	AATT	6 cut(s)	358, 448, 454, 797, 837, 967
SsiI	CCGC	3 cut(s)	127, 939, 998
SspMI	CTAG	2 cut(s)	255, 558
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	3 cut(s)	247, 426, 877
TaqI	TCGA	5 cut(s)	169, 203, 320, 412, 750
TasI	AATT	6 cut(s)	358, 448, 454, 797, 837, 967
TatI	WGTACW	1 cut(s)	732
TauI	GCSGC	1 cut(s)	941
TfiI	GAWTC	3 cut(s)	101, 299, 824
Tru1I	TTAA	6 cut(s)	312, 381, 453, 612, 971, 1088
Tru9I	TTAA	6 cut(s)	312, 381, 453, 612, 971, 1088
TscAI	CASTG	1 cut(s)	880
TseI	GCWGC	4 cut(s)	221, 803, 868, 935
TspDTI	ATGAA	3 cut(s)	46, 219, 882
TspGWI	ACGGA	2 cut(s)	206, 561
TspRI	CASTG	1 cut(s)	880
VpaK11BI	GGWCC	2 cut(s)	345, 1150
XapI	RAATTY	3 cut(s)	448, 797, 967
XceI	RCATGY	1 cut(s)	489
XhoI	CTCGAG	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	1170
XspI	CTAG	2 cut(s)	255, 558
ZrmI	AGTACT	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.