Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009250

Physical Location & Seq

Genomic Coordinates Reverse (-)

21274497 .. 21278198

Gene Structure 3702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g17340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGCTCTCCACCACTCGCAGGCTCCCCCGAGTTCTCAAATCTCCAATCTTCATCTTCCCCCAACGCCTCGTCGCTCCCGAAACTCCACGCGCCTGTCTCCAATGGCGGAAGCTCACCACTCTCTCCGGCATTACCCGAGGTTGCGTGGAGCAACACTCTATGTGGACAATGATGACATGGAGGGCACTTCTTTCATCCGAGGCGAGTGCGGTTGAAGCCATGCCTACAGAGGCTGTGAAGGAGCTGTATGATAGAATGCTGGAGTCTGTGAAAGTTAAACGGTCGATGCCGCCTAATGCTTGGTTGTGGTCCTCGATTGAGAATTGCAATAATCAGGATGATATTAAGCTTTTATTTGACATCTTGCAGAACCTGCGACGATTTAGACTGTCAAATCTGCGCATCCATTCTAATTTTAATTGCAATCTCTGCCAAGAGGTTACTAAGGCATGTGCTCGTGTGGGGGCCCTCGACTTAGGAAAGAAGGCCTTGTGGAAACACAATGTGTACGGATTGACCCCTAGTATCGGATCTGCTCACCATTTACTGCACAATGATGTTAAACTTATGACGGATGTAATGACACTTTTGAAGGATAATGACTTACCCTTGCAAGCTGGCACAGCAGATATTGTTTTCAGCATTTGTTACAATACTGATAACTGGAAGTTGATGTCCAAGTACTCAAAGAGGTTTGTTGAGGCTGGAGTAAAGCTACGGAGATCTGCATTTGACGTCTGGATGGAATTCGCTGCTAAAATAGGAGATGTTGAATCCTTATGGGAAATTGAGAAGTTGAGATCTGAGTCTTGGAAGAAGCACACTGTTGTGAGTGGATTTTCATGTGCAAAGGGTTTACTATTAGAACATAAGCCTGAGGAAGCTGCGGCCGTCATTCAAAAACTACTAAATCAGACTGATGCAAAGGAGCCCAAGATTGCGGTTGAACTCCAAAAGTTGGTTAGTGAGTGGCCACTAGAGGTTATCAAGCGCCAAAAAGAAGAGGATAGGATGGCATTAGCTGTATCCTTAAACTCTGACATTCCGGTGATGCTATCAAAAACTGGATTGGAGGTGAGTGTAAATATGGAGGACCTAACCAGCAAAGAAGGCATTCTCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

375

Amino Acids

42.56

Weight (kDa)

8.85

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21465 AT3G21465 AT4G15640 AT4G15640
fragaria_vesca	FvH4_4g17340 FvH4_4g17340
malus_domestica	MD13G1173000.v1.1 MD16G1174400.v1.1
prunus_persica	Prupe.1G141100_v2.0.a1
pyrus_communis	pycom13g14850 pycom16g14600
rosa_chinensis	RchiOBHm_Chr4g0421281 RchiOBHm_Chr4g0421901
rosa_laevigata	RLG00000007701
rosa_multiflora	Rmu_sc0007721.1_g000005
rosa_roxburghii	Rroxscaffold_5G00363510
rosa_rugosa	Rorug04G0169500
rosa_samantha	Rh4AG230400 Rh4BG233400 Rh4CG244600 Rh4DG229100
rosa_wichuraiana	Rw4G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	738
Acc16I	TGCGCA	1 cut(s)	401
Acc36I	ACCTGC	1 cut(s)	381
AccB7I	CCANNNNNTGG	1 cut(s)	958
AccII	CGCG	1 cut(s)	90
AciI	CCGC	5 cut(s)	106, 209, 290, 887, 941
AclWI	GGATC	1 cut(s)	538
AcoI	YGGCCR	2 cut(s)	888, 971
AcsI	RAATTY	1 cut(s)	746
AcyI	GRCGYC	1 cut(s)	735
AdeI	CACNNNGTG	1 cut(s)	505
AfaI	GTAC	2 cut(s)	509, 683
AfiI	CCNNNNNNNGG	3 cut(s)	18, 527, 958
AgsI	TTSAA	5 cut(s)	215, 592, 773, 899, 947
AleI	CACNNNNGTG	1 cut(s)	827
AluBI	AGCT	7 cut(s)	112, 244, 349, 617, 715, 884, 1022
AluI	AGCT	7 cut(s)	112, 244, 349, 617, 715, 884, 1022
Alw21I	GWGCWC	1 cut(s)	457
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	1 cut(s)	538
AlwNI	CAGNNNCTG	2 cut(s)	233, 373
Ama87I	CYCGRG	2 cut(s)	27, 135
AoxI	GGCC	4 cut(s)	465, 486, 888, 971
ApaI	GGGCCC	1 cut(s)	469
ApeKI	GCWGC	2 cut(s)	752, 884
ApoI	RAATTY	1 cut(s)	746
Asp700I	GAANNNNTTC	1 cut(s)	1113
AspLEI	GCGC	3 cut(s)	92, 402, 993
AspS9I	GGNCC	4 cut(s)	309, 465, 466, 1093
AsuHPI	GGTGA	4 cut(s)	106, 530, 1060, 1087
AvaI	CYCGRG	2 cut(s)	27, 135
AvaII	GGWCC	2 cut(s)	309, 1093
AxyI	CCTNAGG	1 cut(s)	876
BaeGI	GKGCMC	2 cut(s)	187, 469
BalI	TGGCCA	1 cut(s)	973
BanII	GRGCYC	2 cut(s)	469, 933
BauI	CACGAG	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	457
BbvI	GCAGC	2 cut(s)	739, 871
BccI	CCATC	2 cut(s)	736, 1006
BceAI	ACGGC	1 cut(s)	875
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BciVI	GTATCC	1 cut(s)	1036
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	2 cut(s)	522, 977
BfmI	CTRYAG	1 cut(s)	225
BfoI	RGCGCY	1 cut(s)	994
BfuAI	ACCTGC	1 cut(s)	381
BfuI	GTATCC	1 cut(s)	1036
BglII	AGATCT	2 cut(s)	722, 800
BisI	GCNGC	4 cut(s)	290, 753, 885, 888
BlsI	GCNGC	4 cut(s)	291, 754, 886, 889
BmcAI	AGTACT	1 cut(s)	683
Bme18I	GGWCC	2 cut(s)	309, 1093
BmeT110I	CYCGRG	2 cut(s)	27, 135
BmgT120I	GGNCC	4 cut(s)	309, 465, 466, 1093
BmiI	GGNNCC	4 cut(s)	23, 466, 467, 930
BmsI	GCATC	4 cut(s)	276, 411, 910, 1041
BplI	GAGNNNNNCTC	2 cut(s)	140, 172
BpmI	CTGGAG	2 cut(s)	281, 726
BsaHI	GRCGYC	1 cut(s)	735
BsaJI	CCNNGG	2 cut(s)	136, 198
BsaWI	WCCGGW	1 cut(s)	1045
Bsc4I	CCNNNNNNNGG	3 cut(s)	18, 527, 958
Bse1I	ACTGG	2 cut(s)	668, 1069
Bse21I	CCTNAGG	1 cut(s)	876
BseDI	CCNNGG	2 cut(s)	136, 198
BseGI	GGATG	6 cut(s)	194, 343, 402, 580, 747, 1017
BseLI	CCNNNNNNNGG	3 cut(s)	18, 527, 958
BseMII	CTCAG	2 cut(s)	795, 867
BseNI	ACTGG	2 cut(s)	668, 1069
BseSI	GKGCMC	2 cut(s)	187, 469
BseX3I	CGGCCG	1 cut(s)	888
BseXI	GCAGC	2 cut(s)	739, 871
BsgI	GTGCAG	1 cut(s)	533
Bsh1236I	CGCG	1 cut(s)	90
Bsh1285I	CGRYCG	2 cut(s)	284, 891
BshFI	GGCC	4 cut(s)	467, 488, 890, 973
BsiEI	CGRYCG	2 cut(s)	284, 891
BsiHKAI	GWGCWC	1 cut(s)	457
BsiHKCI	CYCGRG	2 cut(s)	27, 135
BsiSI	CCGG	2 cut(s)	126, 1046
BslI	CCNNNNNNNGG	3 cut(s)	18, 527, 958
BsmAI	GTCTC	1 cut(s)	101
BsmI	GAATGC	2 cut(s)	261, 1113
BsnI	GGCC	4 cut(s)	467, 488, 890, 973
BsoBI	CYCGRG	2 cut(s)	27, 135
Bsp120I	GGGCCC	1 cut(s)	465
Bsp1286I	GDGCHC	4 cut(s)	187, 457, 469, 933
Bsp143I	GATC	3 cut(s)	530, 722, 800
BspACI	CCGC	5 cut(s)	106, 209, 290, 887, 941
BspANI	GGCC	4 cut(s)	467, 488, 890, 973
BspCNI	CTCAG	2 cut(s)	796, 868
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	4 cut(s)	23, 466, 467, 930
BspMI	ACCTGC	1 cut(s)	381
BspPI	GGATC	1 cut(s)	538
BsrI	ACTGG	2 cut(s)	668, 1069
BssECI	CCNNGG	2 cut(s)	136, 198
BssMI	GATC	3 cut(s)	530, 722, 800
BssNI	GRCGYC	1 cut(s)	735
BssSI	CACGAG	1 cut(s)	456
Bst2BI	CACGAG	1 cut(s)	456
Bst4CI	ACNGT	3 cut(s)	282, 390, 826
Bst6I	CTCTTC	1 cut(s)	996
BstACI	GRCGYC	1 cut(s)	735
BstAPI	GCANNNNNTGC	2 cut(s)	373, 429
BstC8I	GCNNGC	3 cut(s)	20, 615, 619
BstDEI	CTNAG	4 cut(s)	444, 475, 804, 876
BstF5I	GGATG	6 cut(s)	194, 343, 402, 580, 747, 1017
BstFNI	CGCG	1 cut(s)	90
BstH2I	RGCGCY	1 cut(s)	994
BstHHI	GCGC	3 cut(s)	92, 402, 993
BstKTI	GATC	3 cut(s)	533, 725, 803
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	3 cut(s)	530, 722, 800
BstMCI	CGRYCG	2 cut(s)	284, 891
BstMWI	GCNNNNNNNGC	5 cut(s)	215, 373, 429, 623, 1110
BstNSI	RCATGY	1 cut(s)	453
BstSFI	CTRYAG	1 cut(s)	225
BstSLI	GKGCMC	2 cut(s)	187, 469
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	739, 871
BstX2I	RGATCY	3 cut(s)	530, 722, 800
BstYI	RGATCY	3 cut(s)	530, 722, 800
BstZI	CGGCCG	1 cut(s)	888
Bsu36I	CCTNAGG	1 cut(s)	876
BsuI	GTATCC	1 cut(s)	1036
BsuRI	GGCC	4 cut(s)	467, 488, 890, 973
BtsCI	GGATG	6 cut(s)	194, 343, 402, 580, 747, 1017
BtsIMutI	CAGTG	1 cut(s)	822
BveI	ACCTGC	1 cut(s)	381
Cac8I	GCNNGC	3 cut(s)	20, 615, 619
CaiI	CAGNNNCTG	2 cut(s)	233, 373
CfoI	GCGC	3 cut(s)	92, 402, 993
Cfr13I	GGNCC	4 cut(s)	309, 465, 466, 1093
Csp6I	GTAC	2 cut(s)	508, 682
CviAII	CATG	4 cut(s)	177, 220, 450, 843
CviQI	GTAC	2 cut(s)	508, 682
DdeI	CTNAG	4 cut(s)	444, 475, 804, 876
DpnI	GATC	3 cut(s)	532, 724, 802
DpnII	GATC	3 cut(s)	530, 722, 800
DraIII	CACNNNGTG	1 cut(s)	505
EaeI	YGGCCR	2 cut(s)	888, 971
EagI	CGGCCG	1 cut(s)	888
Eam1104I	CTCTTC	1 cut(s)	996
EarI	CTCTTC	1 cut(s)	996
EciI	GGCGGA	1 cut(s)	121
EclXI	CGGCCG	1 cut(s)	888
Eco147I	AGGCCT	1 cut(s)	488
Eco24I	GRGCYC	2 cut(s)	469, 933
Eco47I	GGWCC	2 cut(s)	309, 1093
Eco52I	CGGCCG	1 cut(s)	888
Eco81I	CCTNAGG	1 cut(s)	876
Eco88I	CYCGRG	2 cut(s)	27, 135
EcoO109I	RGGNCCY	3 cut(s)	465, 466, 1093
EcoRI	GAATTC	1 cut(s)	746
EcoT38I	GRGCYC	2 cut(s)	469, 933
FaeI	CATG	4 cut(s)	180, 223, 453, 846
FalI	AAGNNNNNCTT	2 cut(s)	473, 505
FatI	CATG	4 cut(s)	176, 219, 449, 842
Fnu4HI	GCNGC	4 cut(s)	290, 753, 885, 888
FokI	GGATG	6 cut(s)	181, 350, 389, 587, 754, 1024
FriOI	GRGCYC	2 cut(s)	469, 933
Fsp4HI	GCNGC	4 cut(s)	290, 753, 885, 888
FspBI	CTAG	2 cut(s)	522, 977
FspI	TGCGCA	1 cut(s)	401
GlaI	GCGC	3 cut(s)	91, 401, 992
GluI	GCNGC	4 cut(s)	290, 753, 885, 888
GsuI	CTGGAG	2 cut(s)	281, 726
HaeII	RGCGCY	1 cut(s)	994
HaeIII	GGCC	4 cut(s)	467, 488, 890, 973
HapII	CCGG	2 cut(s)	126, 1046
HhaI	GCGC	3 cut(s)	92, 402, 993
Hin1I	GRCGYC	1 cut(s)	735
Hin1II	CATG	4 cut(s)	180, 223, 453, 846
Hin6I	GCGC	3 cut(s)	90, 400, 991
HinP1I	GCGC	3 cut(s)	90, 400, 991
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	3 cut(s)	263, 773, 806
HpaII	CCGG	2 cut(s)	126, 1046
HphI	GGTGA	4 cut(s)	106, 530, 1060, 1087
Hpy166II	GTNNAC	3 cut(s)	165, 508, 857
Hpy188I	TCNGA	5 cut(s)	199, 530, 805, 915, 1039
Hpy188III	TCNNGA	3 cut(s)	77, 335, 739
Hpy8I	GTNNAC	3 cut(s)	165, 508, 857
Hpy99I	CGWCG	2 cut(s)	74, 381
HpyAV	CCTTC	4 cut(s)	232, 478, 586, 1103
HpyCH4III	ACNGT	3 cut(s)	282, 390, 826
HpyCH4IV	ACGT	1 cut(s)	735
HpyCH4V	TGCA	8 cut(s)	327, 367, 423, 550, 613, 728, 848, 923
HpyF10VI	GCNNNNNNNGC	5 cut(s)	215, 373, 429, 623, 1110
HpyF3I	CTNAG	4 cut(s)	444, 475, 804, 876
HpySE526I	ACGT	1 cut(s)	735
Hsp92I	GRCGYC	1 cut(s)	735
Hsp92II	CATG	4 cut(s)	180, 223, 453, 846
HspAI	GCGC	3 cut(s)	90, 400, 991
Kzo9I	GATC	3 cut(s)	530, 722, 800
LmnI	GCTCC	5 cut(s)	27, 79, 148, 241, 928
Lsp1109I	GCAGC	2 cut(s)	739, 871
LweI	GCATC	4 cut(s)	276, 411, 910, 1041
MaeI	CTAG	2 cut(s)	522, 977
MaeII	ACGT	1 cut(s)	735
MaeIII	GTNAC	2 cut(s)	439, 647
MalI	GATC	3 cut(s)	532, 724, 802
MboI	GATC	3 cut(s)	530, 722, 800
MboII	GAAGA	4 cut(s)	40, 46, 826, 1013
MflI	RGATCY	3 cut(s)	530, 722, 800
MhlI	GDGCHC	4 cut(s)	187, 457, 469, 933
MlsI	TGGCCA	1 cut(s)	973
MluCI	AATT	5 cut(s)	322, 412, 418, 746, 786
MluNI	TGGCCA	1 cut(s)	973
MlyI	GAGTC	2 cut(s)	272, 815
Mox20I	TGGCCA	1 cut(s)	973
MroXI	GAANNNNTTC	1 cut(s)	1113
MscI	TGGCCA	1 cut(s)	973
MseI	TTAA	5 cut(s)	276, 345, 417, 561, 1031
MslI	CAYNNNNRTG	3 cut(s)	555, 827, 1046
Msp20I	TGGCCA	1 cut(s)	973
MspI	CCGG	2 cut(s)	126, 1046
Mva1269I	GAATGC	2 cut(s)	261, 1113
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	5 cut(s)	215, 373, 429, 623, 1110
NdeII	GATC	3 cut(s)	530, 722, 800
NlaIII	CATG	4 cut(s)	180, 223, 453, 846
NlaIV	GGNNCC	4 cut(s)	23, 466, 467, 930
NsbI	TGCGCA	1 cut(s)	401
NspI	RCATGY	1 cut(s)	453
OliI	CACNNNNGTG	1 cut(s)	827
PceI	AGGCCT	1 cut(s)	488
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	2 cut(s)	261, 1113
PdmI	GAANNNNTTC	1 cut(s)	1113
PfeI	GAWTC	1 cut(s)	773
PflMI	CCANNNNNTGG	1 cut(s)	958
PkrI	GCNGC	4 cut(s)	291, 754, 886, 889
PleI	GAGTC	2 cut(s)	271, 814
PpsI	GAGTC	2 cut(s)	271, 814
PpuMI	RGGWCCY	1 cut(s)	1093
Psp5II	RGGWCCY	1 cut(s)	1093
PspN4I	GGNNCC	4 cut(s)	23, 466, 467, 930
PspOMI	GGGCCC	1 cut(s)	465
PspPI	GGNCC	4 cut(s)	309, 465, 466, 1093
PspPPI	RGGWCCY	1 cut(s)	1093
PstNI	CAGNNNCTG	2 cut(s)	233, 373
PsuI	RGATCY	3 cut(s)	530, 722, 800
RsaI	GTAC	2 cut(s)	509, 683
RsaNI	GTAC	2 cut(s)	508, 682
RseI	CAYNNNNRTG	3 cut(s)	555, 827, 1046
SaqAI	TTAA	5 cut(s)	276, 345, 417, 561, 1031
SatI	GCNGC	4 cut(s)	290, 753, 885, 888
Sau3AI	GATC	3 cut(s)	530, 722, 800
Sau96I	GGNCC	4 cut(s)	309, 465, 466, 1093
ScaI	AGTACT	1 cut(s)	683
SchI	GAGTC	2 cut(s)	272, 815
SduI	GDGCHC	4 cut(s)	187, 457, 469, 933
SfaNI	GCATC	4 cut(s)	276, 411, 910, 1041
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	2 cut(s)	309, 1093
SmiMI	CAYNNNNRTG	3 cut(s)	555, 827, 1046
Sse9I	AATT	5 cut(s)	322, 412, 418, 746, 786
SseBI	AGGCCT	1 cut(s)	488
SsiI	CCGC	5 cut(s)	106, 209, 290, 887, 941
SspMI	CTAG	2 cut(s)	522, 977
StuI	AGGCCT	1 cut(s)	488
TaaI	ACNGT	3 cut(s)	282, 390, 826
TaiI	ACGT	1 cut(s)	738
TaqI	TCGA	3 cut(s)	284, 314, 471
TasI	AATT	5 cut(s)	322, 412, 418, 746, 786
TatI	WGTACW	1 cut(s)	681
TauI	GCSGC	2 cut(s)	292, 890
TfiI	GAWTC	1 cut(s)	773
Tru1I	TTAA	5 cut(s)	276, 345, 417, 561, 1031
Tru9I	TTAA	5 cut(s)	276, 345, 417, 561, 1031
TscAI	CASTG	1 cut(s)	829
TseI	GCWGC	2 cut(s)	752, 884
TspDTI	ATGAA	3 cut(s)	40, 183, 831
TspGWI	ACGGA	3 cut(s)	525, 587, 733
TspRI	CASTG	1 cut(s)	829
Van91I	CCANNNNNTGG	1 cut(s)	958
VpaK11BI	GGWCC	2 cut(s)	309, 1093
XapI	RAATTY	1 cut(s)	746
XceI	RCATGY	1 cut(s)	453
XmnI	GAANNNNTTC	1 cut(s)	1113
XspI	CTAG	2 cut(s)	522, 977
ZraI	GACGTC	1 cut(s)	736
ZrmI	AGTACT	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.