Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009250

Physical Location & Seq

Genomic Coordinates Reverse (-)

44763725 .. 44767817

Gene Structure 4093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00363510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGCAAGTGCTCTCCAACACTCGCAGGCTCTCCAGAGTCCTCAAATCTCCAATCTTCATCTTCTCCGAACGACTCCTCGCTCCGGACGCGCCCCTCGCAGAAGCTCCACGCGCTCGTCTCCAATGGCGGAAGCTCCTCACCACTCTCTCTCCCCAACCCTCTGGCATTACTCGAGGTTGTTGTCTTTCGCCGACGGAGCAACACTTGGTGTACACGATGATGACATGTAGGGCAGCCTTTTCATCTGAGGCGACTACGGTTGAAGCTATCCCCACAGAGGCTGTGAAGGAGCTGTATGATAAAATGCTGGAATCTGTGAATGTTAAACGCTCGATGCCCCCTAATGCTTGGTTGTGGTCCTTGATTGAGAATTGCAAAAATCAGGATGATATTAAGCTTTTATTTGACATCTTGCAGAACCTGCGACGATTTAGACTGTCAAATCTACGCATCCATTCAAATTTTAATTGCAATCTCTGCCAAGAGGTTACCAAGGCATGTGCTCGCGTGGGGGCCCTCAACTTTGGAAAGAAGGGCTTGTGGAAACACAATGTGTACGGATTGACCCCTAGTATCGGATCTGCTCACCATTTACTGACATATGCTAAAGAGCACAATGATGTTAAACTTATGATGGATGTAATGACACTTTTGAAGGAGAATGACTTACTTTTGCAATCTGGTACAGCAGATATTGTTTTCAGCATTTGTTACAATACTGATAACTGGAAGTTGATGTCTAAGTACTCAAAGAGGTTTGTCGAGGCTGGAGTAAAGCTACGAAGATCTGCATTTGATGTCTGGATGGAATTCGCTGCTAAAATAGGAGATGTTGAATCCTTATGGGAAATTGAGAAGTTGAGATCTGAGTCTCAGAAGCTGCACACTGTTGTGAGTGGATTTTCATGTGCAAAGGGTTTACTATTAGAGCATAAGCCTGAGGAAGCTGCTGCTGTCATTCAAATACTACTAAACCAGAATTTAACTGATGCAAAGAAGTCCAAGATTGCGGTTGAACTTCAAAAGTTGGTTAGTGAGTGGCCATTAGAGGTTATCAAGCGCCAAAAAGAAGAGGATAGGAAGGCATTAGCTGTATCTTTAAACTCTGATATTCCAGTGATGCTATCAAAGACTGGATTAGAGGTGAGTGTAAATATGGAGGACCTAACCAGCAAAGAAGGCATTCTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

397

Amino Acids

44.97

Weight (kDa)

8.92

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21465 AT3G21465 AT4G15640 AT4G15640
fragaria_vesca	FvH4_4g17340 FvH4_4g17340
malus_domestica	MD13G1173000.v1.1 MD16G1174400.v1.1
prunus_persica	Prupe.1G141100_v2.0.a1
pyrus_communis	pycom13g14850 pycom16g14600
rosa_chinensis	RchiOBHm_Chr4g0421281 RchiOBHm_Chr4g0421901
rosa_laevigata	RLG00000007701
rosa_multiflora	Rmu_sc0007721.1_g000005
rosa_roxburghii	Rroxscaffold_5G00363510
rosa_rugosa	Rorug04G0169500
rosa_samantha	Rh4AG230400 Rh4BG233400 Rh4CG244600 Rh4DG229100
rosa_wichuraiana	Rw4G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	429
AccII	CGCG	3 cut(s)	89, 111, 507
AccIII	TCCGGA	1 cut(s)	82
AciI	CCGC	2 cut(s)	127, 1010
AclWI	GGATC	1 cut(s)	586
AcoI	YGGCCR	1 cut(s)	1040
AcsI	RAATTY	3 cut(s)	460, 809, 979
AdeI	CACNNNGTG	2 cut(s)	208, 553
AfaI	GTAC	4 cut(s)	212, 557, 685, 746
AfiI	CCNNNNNNNGG	3 cut(s)	82, 277, 575
AflIII	ACRYGT	1 cut(s)	224
AgsI	TTSAA	7 cut(s)	263, 459, 655, 836, 962, 1016, 1022
AleI	CACNNNNGTG	1 cut(s)	890
AluBI	AGCT	9 cut(s)	104, 133, 266, 292, 397, 778, 880, 947, 1091
AluI	AGCT	9 cut(s)	104, 133, 266, 292, 397, 778, 880, 947, 1091
Alw21I	GWGCWC	3 cut(s)	12, 505, 615
Alw26I	GTCTC	2 cut(s)	122, 876
AlwI	GGATC	1 cut(s)	586
AlwNI	CAGNNNCTG	3 cut(s)	281, 421, 880
Ama87I	CYCGRG	1 cut(s)	171
Aor13HI	TCCGGA	1 cut(s)	82
AoxI	GGCC	2 cut(s)	513, 1040
ApaI	GGGCCC	1 cut(s)	517
ApeKI	GCWGC	5 cut(s)	233, 815, 880, 947, 950
ApoI	RAATTY	3 cut(s)	460, 809, 979
Asp700I	GAANNNNTTC	1 cut(s)	1182
AspLEI	GCGC	3 cut(s)	91, 113, 1062
AspS9I	GGNCC	4 cut(s)	357, 513, 514, 1162
AsuHPI	GGTGA	3 cut(s)	130, 578, 1156
AvaI	CYCGRG	1 cut(s)	171
AvaII	GGWCC	2 cut(s)	357, 1162
AxyI	CCTNAGG	1 cut(s)	939
BaeGI	GKGCMC	1 cut(s)	517
BalI	TGGCCA	1 cut(s)	1042
BanII	GRGCYC	1 cut(s)	517
Bbv12I	GWGCWC	3 cut(s)	12, 505, 615
BbvI	GCAGC	5 cut(s)	245, 802, 867, 934, 937
BccI	CCATC	2 cut(s)	628, 799
BcoDI	GTCTC	2 cut(s)	122, 876
BfaI	CTAG	1 cut(s)	570
BfoI	RGCGCY	1 cut(s)	1063
BfuAI	ACCTGC	1 cut(s)	429
BglII	AGATCT	2 cut(s)	785, 863
BisI	GCNGC	5 cut(s)	234, 816, 881, 948, 951
BlsI	GCNGC	5 cut(s)	235, 817, 882, 949, 952
BmcAI	AGTACT	1 cut(s)	746
Bme18I	GGWCC	2 cut(s)	357, 1162
BmeT110I	CYCGRG	1 cut(s)	171
BmgT120I	GGNCC	4 cut(s)	357, 513, 514, 1162
BmiI	GGNNCC	2 cut(s)	514, 515
BmsI	GCATC	4 cut(s)	324, 459, 979, 1110
BpmI	CTGGAG	2 cut(s)	16, 789
BsaJI	CCNNGG	1 cut(s)	492
BsaWI	WCCGGW	1 cut(s)	82
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 277, 575
Bse1I	ACTGG	3 cut(s)	731, 1115, 1138
Bse21I	CCTNAGG	1 cut(s)	939
BseAI	TCCGGA	1 cut(s)	82
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	4 cut(s)	391, 450, 643, 810
BseLI	CCNNNNNNNGG	3 cut(s)	82, 277, 575
BseMII	CTCAG	4 cut(s)	237, 858, 887, 930
BseNI	ACTGG	3 cut(s)	731, 1115, 1138
BseRI	GAGGAG	2 cut(s)	65, 125
BseSI	GKGCMC	1 cut(s)	517
BseXI	GCAGC	5 cut(s)	245, 802, 867, 934, 937
BsgI	GTGCAG	1 cut(s)	866
Bsh1236I	CGCG	3 cut(s)	89, 111, 507
BshFI	GGCC	2 cut(s)	515, 1042
BsiHKAI	GWGCWC	3 cut(s)	12, 505, 615
BsiHKCI	CYCGRG	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	83
BslI	CCNNNNNNNGG	3 cut(s)	82, 277, 575
BsmAI	GTCTC	2 cut(s)	122, 876
BsmBI	CGTCTC	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	1182
BsnI	GGCC	2 cut(s)	515, 1042
BsoBI	CYCGRG	1 cut(s)	171
Bsp120I	GGGCCC	1 cut(s)	513
Bsp1286I	GDGCHC	4 cut(s)	12, 505, 517, 615
Bsp13I	TCCGGA	1 cut(s)	82
Bsp1407I	TGTACA	1 cut(s)	210
Bsp143I	GATC	3 cut(s)	578, 785, 863
BspACI	CCGC	2 cut(s)	127, 1010
BspANI	GGCC	2 cut(s)	515, 1042
BspCNI	CTCAG	4 cut(s)	238, 859, 886, 931
BspEI	TCCGGA	1 cut(s)	82
BspFNI	CGCG	3 cut(s)	89, 111, 507
BspLI	GGNNCC	2 cut(s)	514, 515
BspMI	ACCTGC	1 cut(s)	429
BspPI	GGATC	1 cut(s)	586
BsrGI	TGTACA	1 cut(s)	210
BsrI	ACTGG	3 cut(s)	731, 1115, 1138
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	3 cut(s)	578, 785, 863
BssT1I	CCWWGG	1 cut(s)	492
Bst4CI	ACNGT	3 cut(s)	259, 438, 889
Bst6I	CTCTTC	1 cut(s)	1065
BstAPI	GCANNNNNTGC	2 cut(s)	421, 477
BstAUI	TGTACA	1 cut(s)	210
BstC8I	GCNNGC	2 cut(s)	26, 505
BstDEI	CTNAG	5 cut(s)	246, 741, 867, 873, 939
BstEII	GGTNACC	1 cut(s)	487
BstF5I	GGATG	4 cut(s)	391, 450, 643, 810
BstFNI	CGCG	3 cut(s)	89, 111, 507
BstH2I	RGCGCY	1 cut(s)	1063
BstHHI	GCGC	3 cut(s)	91, 113, 1062
BstKTI	GATC	3 cut(s)	581, 788, 866
BstMAI	GTCTC	2 cut(s)	122, 876
BstMBI	GATC	3 cut(s)	578, 785, 863
BstMWI	GCNNNNNNNGC	7 cut(s)	86, 95, 110, 196, 421, 477, 1179
BstNSI	RCATGY	2 cut(s)	228, 501
BstPI	GGTNACC	1 cut(s)	487
BstSLI	GKGCMC	1 cut(s)	517
BstUI	CGCG	3 cut(s)	89, 111, 507
BstV1I	GCAGC	5 cut(s)	245, 802, 867, 934, 937
BstX2I	RGATCY	3 cut(s)	578, 785, 863
BstXI	CCANNNNNNTGG	1 cut(s)	161
BstYI	RGATCY	3 cut(s)	578, 785, 863
Bsu36I	CCTNAGG	1 cut(s)	939
BsuRI	GGCC	2 cut(s)	515, 1042
BtsCI	GGATG	4 cut(s)	391, 450, 643, 810
BtsIMutI	CAGTG	2 cut(s)	885, 1122
BveI	ACCTGC	1 cut(s)	429
Cac8I	GCNNGC	2 cut(s)	26, 505
CaiI	CAGNNNCTG	3 cut(s)	281, 421, 880
CfoI	GCGC	3 cut(s)	91, 113, 1062
Cfr13I	GGNCC	4 cut(s)	357, 513, 514, 1162
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	4 cut(s)	211, 556, 684, 745
CviAII	CATG	3 cut(s)	225, 498, 906
CviQI	GTAC	4 cut(s)	211, 556, 684, 745
DdeI	CTNAG	5 cut(s)	246, 741, 867, 873, 939
DpnI	GATC	3 cut(s)	580, 787, 865
DpnII	GATC	3 cut(s)	578, 785, 863
DraI	TTTAAA	1 cut(s)	1101
DraIII	CACNNNGTG	2 cut(s)	208, 553
EaeI	YGGCCR	1 cut(s)	1040
Eam1104I	CTCTTC	1 cut(s)	1065
EarI	CTCTTC	1 cut(s)	1065
EciI	GGCGGA	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	492
Eco24I	GRGCYC	1 cut(s)	517
Eco47I	GGWCC	2 cut(s)	357, 1162
Eco81I	CCTNAGG	1 cut(s)	939
Eco88I	CYCGRG	1 cut(s)	171
Eco91I	GGTNACC	1 cut(s)	487
EcoO109I	RGGNCCY	3 cut(s)	513, 514, 1162
EcoO65I	GGTNACC	1 cut(s)	487
EcoRI	GAATTC	1 cut(s)	809
EcoT14I	CCWWGG	1 cut(s)	492
EcoT38I	GRGCYC	1 cut(s)	517
ErhI	CCWWGG	1 cut(s)	492
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	3 cut(s)	228, 501, 909
FalI	AAGNNNNNCTT	2 cut(s)	521, 553
FatI	CATG	3 cut(s)	224, 497, 905
FauNDI	CATATG	1 cut(s)	601
Fnu4HI	GCNGC	5 cut(s)	234, 816, 881, 948, 951
FokI	GGATG	4 cut(s)	398, 437, 650, 817
FriOI	GRGCYC	1 cut(s)	517
Fsp4HI	GCNGC	5 cut(s)	234, 816, 881, 948, 951
FspBI	CTAG	1 cut(s)	570
GlaI	GCGC	3 cut(s)	90, 112, 1061
GluI	GCNGC	5 cut(s)	234, 816, 881, 948, 951
GsuI	CTGGAG	2 cut(s)	16, 789
HaeII	RGCGCY	1 cut(s)	1063
HaeIII	GGCC	2 cut(s)	515, 1042
HapII	CCGG	1 cut(s)	83
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	3 cut(s)	91, 113, 1062
Hin1II	CATG	3 cut(s)	228, 501, 909
Hin6I	GCGC	3 cut(s)	89, 111, 1060
HinP1I	GCGC	3 cut(s)	89, 111, 1060
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	5 cut(s)	36, 72, 311, 836, 869
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	3 cut(s)	130, 578, 1156
Hpy166II	GTNNAC	4 cut(s)	211, 213, 556, 920
Hpy188I	TCNGA	6 cut(s)	67, 247, 578, 868, 876, 1108
Hpy188III	TCNNGA	4 cut(s)	33, 83, 383, 802
Hpy8I	GTNNAC	4 cut(s)	211, 213, 556, 920
Hpy99I	CGWCG	2 cut(s)	196, 429
HpyAV	CCTTC	5 cut(s)	280, 526, 649, 1075, 1172
HpyCH4III	ACNGT	3 cut(s)	259, 438, 889
HpyCH4V	TGCA	9 cut(s)	4, 375, 415, 471, 676, 791, 883, 911, 992
HpyF10VI	GCNNNNNNNGC	7 cut(s)	86, 95, 110, 196, 421, 477, 1179
HpyF3I	CTNAG	5 cut(s)	246, 741, 867, 873, 939
Hsp92II	CATG	3 cut(s)	228, 501, 909
HspAI	GCGC	3 cut(s)	89, 111, 1060
Kpn2I	TCCGGA	1 cut(s)	82
Kzo9I	GATC	3 cut(s)	578, 785, 863
LmnI	GCTCC	5 cut(s)	85, 109, 138, 196, 289
Lsp1109I	GCAGC	5 cut(s)	245, 802, 867, 934, 937
LweI	GCATC	4 cut(s)	324, 459, 979, 1110
MaeI	CTAG	1 cut(s)	570
MaeIII	GTNAC	2 cut(s)	487, 710
MalI	GATC	3 cut(s)	580, 787, 865
MboI	GATC	3 cut(s)	578, 785, 863
MboII	GAAGA	4 cut(s)	46, 52, 795, 1082
MflI	RGATCY	3 cut(s)	578, 785, 863
MhlI	GDGCHC	4 cut(s)	12, 505, 517, 615
MlsI	TGGCCA	1 cut(s)	1042
MluCI	AATT	6 cut(s)	370, 460, 466, 809, 849, 979
MluNI	TGGCCA	1 cut(s)	1042
MlyI	GAGTC	3 cut(s)	45, 66, 878
MmeI	TCCRAC	1 cut(s)	39
Mox20I	TGGCCA	1 cut(s)	1042
MroI	TCCGGA	1 cut(s)	82
MroXI	GAANNNNTTC	1 cut(s)	1182
MscI	TGGCCA	1 cut(s)	1042
MseI	TTAA	6 cut(s)	324, 393, 465, 624, 983, 1100
MslI	CAYNNNNRTG	3 cut(s)	218, 618, 890
Msp20I	TGGCCA	1 cut(s)	1042
MspI	CCGG	1 cut(s)	83
Mva1269I	GAATGC	1 cut(s)	1182
MvnI	CGCG	3 cut(s)	89, 111, 507
MwoI	GCNNNNNNNGC	7 cut(s)	86, 95, 110, 196, 421, 477, 1179
NdeI	CATATG	1 cut(s)	601
NdeII	GATC	3 cut(s)	578, 785, 863
NlaIII	CATG	3 cut(s)	228, 501, 909
NlaIV	GGNNCC	2 cut(s)	514, 515
NspI	RCATGY	2 cut(s)	228, 501
OliI	CACNNNNGTG	1 cut(s)	890
PaeR7I	CTCGAG	1 cut(s)	171
PciI	ACATGT	1 cut(s)	224
PctI	GAATGC	1 cut(s)	1182
PdmI	GAANNNNTTC	1 cut(s)	1182
PfeI	GAWTC	2 cut(s)	311, 836
PkrI	GCNGC	5 cut(s)	235, 817, 882, 949, 952
PleI	GAGTC	3 cut(s)	44, 66, 877
PpsI	GAGTC	3 cut(s)	44, 66, 877
PpuMI	RGGWCCY	1 cut(s)	1162
PscI	ACATGT	1 cut(s)	224
Psp5II	RGGWCCY	1 cut(s)	1162
PspEI	GGTNACC	1 cut(s)	487
PspN4I	GGNNCC	2 cut(s)	514, 515
PspOMI	GGGCCC	1 cut(s)	513
PspPI	GGNCC	4 cut(s)	357, 513, 514, 1162
PspPPI	RGGWCCY	1 cut(s)	1162
PspXI	VCTCGAGB	1 cut(s)	171
PstNI	CAGNNNCTG	3 cut(s)	281, 421, 880
PsuI	RGATCY	3 cut(s)	578, 785, 863
RsaI	GTAC	4 cut(s)	212, 557, 685, 746
RsaNI	GTAC	4 cut(s)	211, 556, 684, 745
RseI	CAYNNNNRTG	3 cut(s)	218, 618, 890
SaqAI	TTAA	6 cut(s)	324, 393, 465, 624, 983, 1100
SatI	GCNGC	5 cut(s)	234, 816, 881, 948, 951
Sau3AI	GATC	3 cut(s)	578, 785, 863
Sau96I	GGNCC	4 cut(s)	357, 513, 514, 1162
ScaI	AGTACT	1 cut(s)	746
SchI	GAGTC	3 cut(s)	45, 66, 878
SduI	GDGCHC	4 cut(s)	12, 505, 517, 615
SfaNI	GCATC	4 cut(s)	324, 459, 979, 1110
Sfr274I	CTCGAG	1 cut(s)	171
SinI	GGWCC	2 cut(s)	357, 1162
SlaI	CTCGAG	1 cut(s)	171
SmiMI	CAYNNNNRTG	3 cut(s)	218, 618, 890
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
Sse9I	AATT	6 cut(s)	370, 460, 466, 809, 849, 979
SsiI	CCGC	2 cut(s)	127, 1010
SspMI	CTAG	1 cut(s)	570
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	3 cut(s)	259, 438, 889
TaqI	TCGA	3 cut(s)	172, 332, 762
TasI	AATT	6 cut(s)	370, 460, 466, 809, 849, 979
TatI	WGTACW	2 cut(s)	210, 744
TfiI	GAWTC	2 cut(s)	311, 836
Tru1I	TTAA	6 cut(s)	324, 393, 465, 624, 983, 1100
Tru9I	TTAA	6 cut(s)	324, 393, 465, 624, 983, 1100
TscAI	CASTG	2 cut(s)	892, 1122
TseI	GCWGC	5 cut(s)	233, 815, 880, 947, 950
TspDTI	ATGAA	3 cut(s)	46, 231, 894
TspGWI	ACGGA	2 cut(s)	209, 573
TspRI	CASTG	2 cut(s)	892, 1122
VpaK11BI	GGWCC	2 cut(s)	357, 1162
XapI	RAATTY	3 cut(s)	460, 809, 979
XceI	RCATGY	2 cut(s)	228, 501
XhoI	CTCGAG	1 cut(s)	171
XmnI	GAANNNNTTC	1 cut(s)	1182
XspI	CTAG	1 cut(s)	570
ZrmI	AGTACT	1 cut(s)	746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.