Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004198

Physical Location & Seq

Genomic Coordinates Reverse (-)

8097678 .. 8100932

Gene Structure 3255 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G22880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGATGGCTTCTCTTAAAGCTGAAGAAACGAGCCAGATGCAGCTCGTTGAGCGTGAAGAAAATGATGAAGACGAAGATCTATTTGAGATGATTGACAAATTGATCGCACAAGGTATAAACGCAGGAGATGTGAAAAAGCTACAAGAAGCTGGGATCCATACCTGCAATGGTCTCATGATGCATACCAAGAAGAACCTTACTGGAATCAAAGGTTTATCTGAGGCCAAAGTTGACAAAATCTGTGAAGCTGCTGAGAAAATTGTGAACTTTGGATATATGACTGGAAGTGATGCTCTTATAAAGAGGAAATCAGTTGTAAAAATCACTACAGGGTGTCAAGCTCTCGATGATCTCTTAGGAGGTGGAATTGAAACCTCAGCCATCACAGAGGCTTTTGGGGAATTTAGGTCTGGGAAAACCCAATTAGCACATACCCTTTGTGTCACTACGCAGCTACCTACAAACATGAAAGGAGGGAATGGAAAAGTGGCATACATTGACACAGAGGGAACCTTCCGTCCTGATAGGATTGTCCCAATTGCTGAAAGATTTGGAATGGATCCAGGAGCTGTGCTTGACAATATCATTTATGCTCGTGCTTATACCTATGAGCATCAGTACAACTTGCTTCTTGGCCTTGCTGCAAAAATGTCTGAGGAACCATTTAGGATTCTGATTGTTGACTCGATCATTGCTTTATTCCGAGTGGATTTCACTGGAAGAGGAGAACTCGCAGACCGCCAGCAAAAACTAGCTCAGATGCTTTCCAGGCTAATCAAAATTGCAGAGGAGTTCAACGTTGCTGTCTACATGACTAACCAAGTCATAGCTGACCCAGGTGGTGGAATGTTCATATCAGACCCAAAAAAGCCAGCAGGTGGTCATGTACTAGCTCACGCAGCCACCATCAGGCTCTTGTTCAGGAAAGGCAAAGGCGATACACGTGTCTGCAAAGTCTACGATGCTCCGAATCTCGCTGAAGCTGAAGCCAGTTTCCAGATTACTCAAGGAGGCATTGCTGACGCGAAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000228 GO:0000280 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070192 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Rad51

Protein Analysis

344

Amino Acids

37.51

Weight (kDa)

5.54

Isoelectric Point (pI)

20.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	101 - 342	4.9e-121	Rad51
RecA_N	PF00154	102 - 310	4.2e-10	RecA N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22880 AT3G22880
fragaria_vesca	FvH4_4g03620 FvH4_4g03620 FvH4_4g03740 FvH4_4g03740 FvH4_4g03740
malus_domestica	MD16G1200300.v1.1
prunus_persica	Prupe.1G022500_v2.0.a1 Prupe.1G022500_v2.0.a1
pyrus_communis	pycom16g16950
rosa_chinensis	RchiOBHm_Chr4g0392991 RchiOBHm_Chr4g0393441 RchiOBHm_Chr4g0393481
rosa_laevigata	RLG00000009753 RLG00000009756 RLG00000009776 RLG00000010122
rosa_multiflora	Rmu_sc0008339.1_g000015 Rmu_sc0008931.1_g000008 Rmu_sc0012965.1_g000002
rosa_roxburghii	Rroxscaffold_5G00338100 Rroxscaffold_5G00338400
rosa_rugosa	Rorug03G0309300 Rorug03G0310500 Rorug04G0001200 Rorug04G0001300 Rorug04G0001700 Rorug04G0003100
rosa_samantha	Rh4CG016900
rosa_wichuraiana	Rw4G003560 Rw4G003710 Rw4G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	299
AarI	CACCTGC	1 cut(s)	866
Acc36I	ACCTGC	2 cut(s)	170, 866
AccB7I	CCANNNNNTGG	2 cut(s)	842, 878
AccI	GTMKAC	2 cut(s)	807, 957
AccII	CGCG	1 cut(s)	1025
AciI	CCGC	1 cut(s)	739
AclI	AACGTT	1 cut(s)	798
AclWI	GGATC	4 cut(s)	148, 161, 554, 567
AcsI	RAATTY	1 cut(s)	401
AcuI	CTGAAG	3 cut(s)	42, 999, 1005
AcvI	CACGTG	1 cut(s)	944
AfaI	GTAC	2 cut(s)	620, 888
AfiI	CCNNNNNNNGG	3 cut(s)	842, 878, 909
AflIII	ACRYGT	2 cut(s)	941, 943
AgsI	TTSAA	2 cut(s)	371, 796
AjnI	CCWGG	3 cut(s)	562, 767, 835
AloI	GAACNNNNNNTCC	2 cut(s)	502, 534
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	4 cut(s)	148, 161, 554, 567
AlwNI	CAGNNNCTG	1 cut(s)	569
AoxI	GGCC	2 cut(s)	222, 634
ApeKI	GCWGC	5 cut(s)	40, 248, 451, 641, 899
ApoI	RAATTY	1 cut(s)	401
BaeI	ACNNNNGTAYC	2 cut(s)	930, 963
BamHI	GGATCC	2 cut(s)	153, 559
BauI	CACGAG	1 cut(s)	594
BbrPI	CACGTG	1 cut(s)	944
BbsI	GAAGAC	1 cut(s)	75
BbvCI	CCTCAGC	1 cut(s)	376
BbvI	GCAGC	5 cut(s)	52, 235, 463, 628, 911
BccI	CCATC	2 cut(s)	389, 914
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BciT130I	CCWGG	3 cut(s)	564, 769, 837
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	2 cut(s)	752, 890
BfmI	CTRYAG	1 cut(s)	327
BfuAI	ACCTGC	2 cut(s)	170, 866
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	5 cut(s)	41, 249, 452, 642, 900
BlsI	GCNGC	5 cut(s)	42, 250, 453, 643, 901
Bme1390I	CCNGG	3 cut(s)	564, 769, 837
BmiI	GGNNCC	4 cut(s)	155, 511, 561, 660
BmrFI	CCNGG	3 cut(s)	564, 769, 837
BmsI	GCATC	6 cut(s)	27, 168, 280, 622, 750, 952
BpiI	GAAGAC	1 cut(s)	75
BplI	GAGNNNNNCTC	2 cut(s)	714, 746
Bpu10I	CCTNAGC	1 cut(s)	376
BpuEI	CTTGAG	1 cut(s)	990
BsaAI	YACGTR	1 cut(s)	944
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	835
Bsc4I	CCNNNNNNNGG	3 cut(s)	842, 878, 909
Bse1I	ACTGG	4 cut(s)	205, 286, 721, 990
Bse3DI	GCAATG	3 cut(s)	172, 690, 1014
BseBI	CCWGG	3 cut(s)	564, 769, 837
BseDI	CCNNGG	1 cut(s)	835
BseLI	CCNNNNNNNGG	3 cut(s)	842, 878, 909
BseMI	GCAATG	3 cut(s)	172, 690, 1014
BseMII	CTCAG	5 cut(s)	210, 243, 390, 645, 770
BseNI	ACTGG	4 cut(s)	205, 286, 721, 990
BseRI	GAGGAG	2 cut(s)	738, 803
BseXI	GCAGC	5 cut(s)	52, 235, 463, 628, 911
BseYI	CCCAGC	1 cut(s)	149
Bsh1236I	CGCG	1 cut(s)	1025
BshFI	GGCC	2 cut(s)	224, 636
BslFI	GGGAC	1 cut(s)	518
BslI	CCNNNNNNNGG	3 cut(s)	842, 878, 909
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	518
BsnI	GGCC	2 cut(s)	224, 636
Bso31I	GGTCTC	1 cut(s)	176
Bsp143I	GATC	6 cut(s)	76, 102, 153, 349, 559, 687
BspACI	CCGC	1 cut(s)	739
BspANI	GGCC	2 cut(s)	224, 636
BspCNI	CTCAG	5 cut(s)	211, 244, 389, 646, 769
BspFNI	CGCG	1 cut(s)	1025
BspHI	TCATGA	1 cut(s)	174
BspLI	GGNNCC	4 cut(s)	155, 511, 561, 660
BspMI	ACCTGC	2 cut(s)	170, 866
BspPI	GGATC	4 cut(s)	148, 161, 554, 567
BspTNI	GGTCTC	1 cut(s)	176
BsrDI	GCAATG	3 cut(s)	172, 690, 1014
BsrI	ACTGG	4 cut(s)	205, 286, 721, 990
BssECI	CCNNGG	1 cut(s)	835
BssMI	GATC	6 cut(s)	76, 102, 153, 349, 559, 687
BssSI	CACGAG	1 cut(s)	594
Bst2BI	CACGAG	1 cut(s)	594
Bst2UI	CCWGG	3 cut(s)	564, 769, 837
Bst6I	CTCTTC	1 cut(s)	715
BstBAI	YACGTR	1 cut(s)	944
BstC8I	GCNNGC	2 cut(s)	743, 873
BstDEI	CTNAG	6 cut(s)	219, 252, 355, 376, 654, 756
BstFNI	CGCG	1 cut(s)	1025
BstKTI	GATC	6 cut(s)	79, 105, 156, 352, 562, 690
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	6 cut(s)	76, 102, 153, 349, 559, 687
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 769, 899
BstNI	CCWGG	3 cut(s)	564, 769, 837
BstSCI	CCNGG	3 cut(s)	562, 767, 835
BstSFI	CTRYAG	1 cut(s)	327
BstUI	CGCG	1 cut(s)	1025
BstV1I	GCAGC	5 cut(s)	52, 235, 463, 628, 911
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	3 cut(s)	76, 153, 559
BstYI	RGATCY	3 cut(s)	76, 153, 559
BsuRI	GGCC	2 cut(s)	224, 636
BtsIMutI	CAGTG	1 cut(s)	714
BveI	ACCTGC	2 cut(s)	170, 866
Cac8I	GCNNGC	2 cut(s)	743, 873
CaiI	CAGNNNCTG	1 cut(s)	569
CciI	TCATGA	1 cut(s)	174
Csp6I	GTAC	2 cut(s)	619, 887
CviAII	CATG	4 cut(s)	175, 466, 811, 884
CviQI	GTAC	2 cut(s)	619, 887
DdeI	CTNAG	6 cut(s)	219, 252, 355, 376, 654, 756
DpnI	GATC	6 cut(s)	78, 104, 155, 351, 561, 689
DpnII	GATC	6 cut(s)	76, 102, 153, 349, 559, 687
Eam1104I	CTCTTC	1 cut(s)	715
EarI	CTCTTC	1 cut(s)	715
Eco31I	GGTCTC	1 cut(s)	176
Eco57I	CTGAAG	3 cut(s)	42, 999, 1005
Eco72I	CACGTG	1 cut(s)	944
EcoRII	CCWGG	3 cut(s)	562, 767, 835
EcoT22I	ATGCAT	1 cut(s)	183
FaeI	CATG	4 cut(s)	178, 469, 814, 887
FaqI	GGGAC	1 cut(s)	518
FatI	CATG	4 cut(s)	174, 465, 810, 883
FblI	GTMKAC	2 cut(s)	807, 957
Fnu4HI	GCNGC	5 cut(s)	41, 249, 452, 642, 900
Fsp4HI	GCNGC	5 cut(s)	41, 249, 452, 642, 900
FspBI	CTAG	2 cut(s)	752, 890
GluI	GCNGC	5 cut(s)	41, 249, 452, 642, 900
GsaI	CCCAGC	1 cut(s)	153
HaeIII	GGCC	2 cut(s)	224, 636
Hin1II	CATG	4 cut(s)	178, 469, 814, 887
HincII	GTYRAC	2 cut(s)	232, 682
HindII	GTYRAC	2 cut(s)	232, 682
HinfI	GANTC	4 cut(s)	204, 670, 683, 970
Hpy166II	GTNNAC	5 cut(s)	232, 265, 682, 808, 958
Hpy188I	TCNGA	7 cut(s)	220, 655, 675, 704, 759, 859, 969
Hpy188III	TCNNGA	5 cut(s)	175, 344, 521, 922, 997
Hpy8I	GTNNAC	5 cut(s)	232, 265, 682, 808, 958
HpyAV	CCTTC	2 cut(s)	523, 1021
HpyCH4IV	ACGT	2 cut(s)	798, 943
HpyCH4V	TGCA	6 cut(s)	40, 165, 181, 644, 785, 951
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 769, 899
HpyF3I	CTNAG	6 cut(s)	219, 252, 355, 376, 654, 756
HpySE526I	ACGT	2 cut(s)	798, 943
Hsp92II	CATG	4 cut(s)	178, 469, 814, 887
Kzo9I	GATC	6 cut(s)	76, 102, 153, 349, 559, 687
LmnI	GCTCC	2 cut(s)	566, 970
Lsp1109I	GCAGC	5 cut(s)	52, 235, 463, 628, 911
LweI	GCATC	6 cut(s)	27, 168, 280, 622, 750, 952
MaeI	CTAG	2 cut(s)	752, 890
MaeII	ACGT	2 cut(s)	798, 943
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	6 cut(s)	78, 104, 155, 351, 561, 689
MboI	GATC	6 cut(s)	76, 102, 153, 349, 559, 687
MboII	GAAGA	6 cut(s)	35, 68, 80, 86, 202, 732
MfeI	CAATTG	1 cut(s)	537
MflI	RGATCY	3 cut(s)	76, 153, 559
MluCI	AATT	7 cut(s)	98, 258, 366, 401, 422, 537, 780
MlyI	GAGTC	1 cut(s)	677
Mph1103I	ATGCAT	1 cut(s)	183
MseI	TTAA	1 cut(s)	15
MspR9I	CCNGG	3 cut(s)	564, 769, 837
MunI	CAATTG	1 cut(s)	537
MvaI	CCWGG	3 cut(s)	564, 769, 837
MvnI	CGCG	1 cut(s)	1025
MwoI	GCNNNNNNNGC	3 cut(s)	49, 769, 899
NdeII	GATC	6 cut(s)	76, 102, 153, 349, 559, 687
NlaIII	CATG	4 cut(s)	178, 469, 814, 887
NlaIV	GGNNCC	4 cut(s)	155, 511, 561, 660
NmuCI	GTSAC	1 cut(s)	442
NsiI	ATGCAT	1 cut(s)	183
PagI	TCATGA	1 cut(s)	174
PaqCI	CACCTGC	1 cut(s)	866
PfeI	GAWTC	3 cut(s)	204, 670, 970
PflMI	CCANNNNNTGG	2 cut(s)	842, 878
PfoI	TCCNGGA	1 cut(s)	562
PkrI	GCNGC	5 cut(s)	42, 250, 453, 643, 901
PleI	GAGTC	1 cut(s)	677
PmaCI	CACGTG	1 cut(s)	944
PmlI	CACGTG	1 cut(s)	944
PpsI	GAGTC	1 cut(s)	677
Ppu21I	YACGTR	1 cut(s)	944
PsiI	TTATAA	1 cut(s)	299
Psp1406I	AACGTT	1 cut(s)	798
Psp6I	CCWGG	3 cut(s)	562, 767, 835
PspCI	CACGTG	1 cut(s)	944
PspFI	CCCAGC	1 cut(s)	149
PspGI	CCWGG	3 cut(s)	562, 767, 835
PspN4I	GGNNCC	4 cut(s)	155, 511, 561, 660
PstNI	CAGNNNCTG	1 cut(s)	569
PsuI	RGATCY	3 cut(s)	76, 153, 559
RsaI	GTAC	2 cut(s)	620, 888
RsaNI	GTAC	2 cut(s)	619, 887
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	5 cut(s)	41, 249, 452, 642, 900
Sau3AI	GATC	6 cut(s)	76, 102, 153, 349, 559, 687
SchI	GAGTC	1 cut(s)	677
ScrFI	CCNGG	3 cut(s)	564, 769, 837
SfaNI	GCATC	6 cut(s)	27, 168, 280, 622, 750, 952
SfcI	CTRYAG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	1005
SmoI	CTYRAG	1 cut(s)	1005
Sse9I	AATT	7 cut(s)	98, 258, 366, 401, 422, 537, 780
SsiI	CCGC	1 cut(s)	739
SspMI	CTAG	2 cut(s)	752, 890
StyD4I	CCNGG	3 cut(s)	562, 767, 835
TaiI	ACGT	2 cut(s)	801, 946
TaqI	TCGA	2 cut(s)	345, 686
TasI	AATT	7 cut(s)	98, 258, 366, 401, 422, 537, 780
TatI	WGTACW	2 cut(s)	618, 886
TfiI	GAWTC	3 cut(s)	204, 670, 970
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	1 cut(s)	721
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	5 cut(s)	40, 248, 451, 641, 899
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	3 cut(s)	81, 482, 841
TspGWI	ACGGA	1 cut(s)	506
TspRI	CASTG	1 cut(s)	721
Van91I	CCANNNNNTGG	2 cut(s)	842, 878
XapI	RAATTY	1 cut(s)	401
XcmI	CCANNNNNNNNNTGG	1 cut(s)	164
XmiI	GTMKAC	2 cut(s)	807, 957
XspI	CTAG	2 cut(s)	752, 890
Zsp2I	ATGCAT	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.