Rorug03G0309300

Belongs to the RecA family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
32936833 .. 32939183
2351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0309300.1

Sequence Viewer

Length: 1359 bp
ATGTTTGCTTCGCGTCGGAGTACAGTAAATGATGTGGAGATTGCTTGGGGATCTAATCCGATGAGACCCAAGACTGGATGGGTGCGAGAATGGGATTTTTCGATTCGCCCTGGTAGGGCGCGGCTCAAATCGGACCTGATCTGGGTTGGAGGAGCATATACTGGAGCAGCGATCGCTAGTCTCTTATCTGACCCAATTATGGCGGTTGCAGGGAACCGGGGTGCTGATCAAGGTGGTCTGAAAACCATAGGTGCCTGGTGGAGACAAGTTTCCGATCCCCATACCAGAATGAGGGGCATTGGTGCACTCCAACCTCTAAGATGGGGGAGCAAAATATGGCATGGTGCCATCCAACCTCGGAAAAGTTTAGTGACTTGGAAGGTTTTGTTGAATCGAATTCCTACAGATGACCTACTCCAACGAAGAGGATCAGTCCTATGCTCACGATGCCAATTGTGCAAATCTAACTCTGAAAGCACAAGTCATCTCTTTGTTACATGTGAGGCTTCTCTCTTGATCTGGCATTGGGTGGTATCTCTTTTCAGACTTCGTTTTGATCCAGGTATGTCATTAGTTGACCTGCTAGAAGGCAACTTCGTTTCTAGCCTCTCTATTTCCTCCAAGCTACTTTGGTATATTTCTTTTTGCAATATCCTTTGGAGTTTTTGGATGGAGCGTAACAGATTAAAGCATGATGGAGGTGACTTTAATGAGGTGAATTTTAAACAGAGGTTGATCTTGTCTTTTAAGGAATCAGCATCTCTGGTTTTTACCCCTTCTTCTAACCCCCAGTCTCTGCCAATTTTTGTGCTTCTGGGTCTTTCTCCTTTACGCCCTGCAGCCCCTAGAGTTGTGCAAGTGTTATGGCACCCCCCTCCTATTCATTGGGTGAAAGTAAACACCGATGGATCTTTCCATGGGCCGTCTCTTGCAAGTTATGGTGGGATTTTCCGTACTAGTGAGGCAGAATTTCTAGGAGCCTTCTCTGCCAAGGTTGCAGTGCCTAATGCTCTAGACGCAGAGATGTTAGCTGTCATTGAGGCAGTGCGCTTAGCTTGGACAAATGGGTGGCACAATCTGTGGTTAGAAGTGGATTCTTTGCTTCTGTTAAAGTACTTCAAGGTTCCCTTGTCTGTTCCTTGGCATCTTCGTACAATTTGGGGTAACTGCTTGCAAACAACCAGTCAAATGAATGTTCACATCTCCCACATCTTCAGGGAAGGTAACTCAGTAGCAGACAAGTTAGCTAACTATGGTGCCAGTTCAAATAACTATGTTTGGTGGGATTTGTTACCACCGTTTCTATACTCCTCTTTTGGTCAGGATCTATCTTTTTGTCCTCGTTATAGGTTTTCTTAA

Protein Analysis

452

Amino Acids

51.06

Weight (kDa)

9.63

Isoelectric Point (pI)

34.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 106 - 174 3.8e-17 zinc-binding in reverse transcriptase
RVT_3 PF13456 300 - 418 1.8e-17 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 588
AccB1I GGYRCC 4 cut(s) 251, 344, 867, 1256
AccII CGCG 2 cut(s) 13, 121
AciI CCGC 2 cut(s) 121, 203
AclWI GGATC 6 cut(s) 58, 269, 436, 551, 916, 1332
AcsI RAATTY 3 cut(s) 396, 718, 968
AcuI CTGAAG 1 cut(s) 1198
AfaI GTAC 4 cut(s) 22, 955, 1115, 1153
AfiI CCNNNNNNNGG 5 cut(s) 74, 115, 142, 199, 291
AflIII ACRYGT 1 cut(s) 497
AgsI TTSAA 3 cut(s) 391, 1120, 1266
AhlI ACTAGT 1 cut(s) 956
AjnI CCWGG 3 cut(s) 109, 254, 559
AluBI AGCT 4 cut(s) 625, 1031, 1055, 1247
AluI AGCT 4 cut(s) 625, 1031, 1055, 1247
Alw21I GWGCWC 1 cut(s) 307
Alw26I GTCTC 5 cut(s) 58, 185, 256, 798, 930
Alw44I GTGCAC 1 cut(s) 303
AlwI GGATC 6 cut(s) 58, 269, 436, 551, 916, 1332
AlwNI CAGNNNCTG 1 cut(s) 796
AoxI GGCC 1 cut(s) 920
ApaLI GTGCAC 1 cut(s) 303
ApeKI GCWGC 2 cut(s) 167, 839
ApoI RAATTY 3 cut(s) 396, 718, 968
ArsI GACNNNNNNTTYG 2 cut(s) 1168, 1200
AsiSI GCGATCGC 1 cut(s) 174
AspLEI GCGC 2 cut(s) 121, 1050
AspS9I GGNCC 2 cut(s) 133, 920
AsuC2I CCSGG 1 cut(s) 218
AsuHPI GGTGA 3 cut(s) 713, 727, 901
AvaII GGWCC 1 cut(s) 133
BaeGI GKGCMC 1 cut(s) 307
BanI GGYRCC 4 cut(s) 251, 344, 867, 1256
Bbv12I GWGCWC 1 cut(s) 307
BbvI GCAGC 2 cut(s) 179, 851
BccI CCATC 6 cut(s) 72, 315, 356, 664, 689, 899
BceAI ACGGC 1 cut(s) 907
BciT130I CCWGG 3 cut(s) 111, 256, 561
BclI TGATCA 1 cut(s) 226
BcnI CCSGG 1 cut(s) 218
BcoDI GTCTC 5 cut(s) 58, 185, 256, 798, 930
BcuI ACTAGT 1 cut(s) 956
BfaI CTAG 7 cut(s) 177, 584, 603, 846, 957, 974, 1013
BfmI CTRYAG 2 cut(s) 402, 837
BfuAI ACCTGC 1 cut(s) 588
BisI GCNGC 3 cut(s) 122, 168, 840
BlpI GCTNAGC 1 cut(s) 1051
BlsI GCNGC 3 cut(s) 123, 169, 841
BmcAI AGTACT 1 cut(s) 1115
Bme1390I CCNGG 4 cut(s) 111, 218, 256, 561
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 2 cut(s) 133, 920
BmiI GGNNCC 7 cut(s) 215, 253, 346, 869, 979, 1125, 1258
BmrFI CCNGG 4 cut(s) 111, 218, 256, 561
BmrI ACTGGG 1 cut(s) 784
BmsI GCATC 3 cut(s) 437, 767, 1153
BmuI ACTGGG 1 cut(s) 784
BpmI CTGGAG 1 cut(s) 183
Bpu1102I GCTNAGC 1 cut(s) 1051
BpuMI CCSGG 1 cut(s) 218
BsaI GGTCTC 1 cut(s) 58
BsaJI CCNNGG 6 cut(s) 109, 217, 356, 916, 990, 1139
Bsc4I CCNNNNNNNGG 5 cut(s) 74, 115, 142, 199, 291
Bse1I ACTGG 5 cut(s) 79, 166, 790, 1182, 1260
BseBI CCWGG 3 cut(s) 111, 256, 561
BseDI CCNNGG 6 cut(s) 109, 217, 356, 916, 990, 1139
BseGI GGATG 3 cut(s) 83, 348, 675
BseLI CCNNNNNNNGG 5 cut(s) 74, 115, 142, 199, 291
BseMII CTCAG 1 cut(s) 1242
BseNI ACTGG 5 cut(s) 79, 166, 790, 1182, 1260
BseRI GAGGAG 2 cut(s) 165, 1300
BseSI GKGCMC 1 cut(s) 307
BseXI GCAGC 2 cut(s) 179, 851
Bsh1236I CGCG 2 cut(s) 13, 121
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 1 cut(s) 922
BshNI GGYRCC 4 cut(s) 251, 344, 867, 1256
BsiEI CGRYCG 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 307
BsiSI CCGG 1 cut(s) 217
BslI CCNNNNNNNGG 5 cut(s) 74, 115, 142, 199, 291
BsmAI GTCTC 5 cut(s) 58, 185, 256, 798, 930
BsmBI CGTCTC 1 cut(s) 930
BsnI GGCC 1 cut(s) 922
Bso31I GGTCTC 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 307
Bsp1720I GCTNAGC 1 cut(s) 1051
Bsp19I CCATGG 1 cut(s) 916
BspACI CCGC 2 cut(s) 121, 203
BspANI GGCC 1 cut(s) 922
BspCNI CTCAG 1 cut(s) 1241
BspFNI CGCG 2 cut(s) 13, 121
BspLI GGNNCC 7 cut(s) 215, 253, 346, 869, 979, 1125, 1258
BspMAI CTGCAG 1 cut(s) 841
BspMI ACCTGC 1 cut(s) 588
BspPI GGATC 6 cut(s) 58, 269, 436, 551, 916, 1332
BspT107I GGYRCC 4 cut(s) 251, 344, 867, 1256
BspTNI GGTCTC 1 cut(s) 58
BsrI ACTGG 5 cut(s) 79, 166, 790, 1182, 1260
BssECI CCNNGG 6 cut(s) 109, 217, 356, 916, 990, 1139
BssT1I CCWWGG 3 cut(s) 916, 990, 1139
Bst2UI CCWGG 3 cut(s) 111, 256, 561
Bst4CI ACNGT 2 cut(s) 25, 1299
Bst6I CTCTTC 1 cut(s) 418
BstC8I GCNNGC 1 cut(s) 1172
BstDEI CTNAG 3 cut(s) 317, 1051, 1228
BstDSI CCRYGG 1 cut(s) 916
BstF5I GGATG 3 cut(s) 83, 348, 675
BstFNI CGCG 2 cut(s) 13, 121
BstHHI GCGC 2 cut(s) 121, 1050
BstMAI GTCTC 5 cut(s) 58, 185, 256, 798, 930
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 6 cut(s) 173, 447, 456, 986, 995, 1016
BstNI CCWGG 3 cut(s) 111, 256, 561
BstNSI RCATGY 1 cut(s) 501
BstSCI CCNGG 4 cut(s) 109, 216, 254, 559
BstSFI CTRYAG 2 cut(s) 402, 837
BstSLI GKGCMC 1 cut(s) 307
BstUI CGCG 2 cut(s) 13, 121
BstV1I GCAGC 2 cut(s) 179, 851
BstX2I RGATCY 3 cut(s) 50, 908, 1324
BstYI RGATCY 3 cut(s) 50, 908, 1324
BsuRI GGCC 1 cut(s) 922
BtgI CCRYGG 1 cut(s) 916
BtsCI GGATG 3 cut(s) 83, 348, 675
BtsI GCAGTG 2 cut(s) 1005, 1050
BtsIMutI CAGTG 2 cut(s) 1005, 1050
BveI ACCTGC 1 cut(s) 588
Cac8I GCNNGC 1 cut(s) 1172
CaiI CAGNNNCTG 1 cut(s) 796
CfoI GCGC 2 cut(s) 121, 1050
Cfr13I GGNCC 2 cut(s) 133, 920
CseI GACGC 2 cut(s) 2, 1025
Csp6I GTAC 4 cut(s) 21, 954, 1114, 1152
CviAII CATG 4 cut(s) 341, 498, 692, 917
CviQI GTAC 4 cut(s) 21, 954, 1114, 1152
DdeI CTNAG 3 cut(s) 317, 1051, 1228
DraI TTTAAA 1 cut(s) 724
Eam1104I CTCTTC 1 cut(s) 418
EarI CTCTTC 1 cut(s) 418
Eco130I CCWWGG 3 cut(s) 916, 990, 1139
Eco31I GGTCTC 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 1198
EcoRI GAATTC 1 cut(s) 396
EcoRII CCWGG 3 cut(s) 109, 254, 559
EcoT14I CCWWGG 3 cut(s) 916, 990, 1139
ErhI CCWWGG 3 cut(s) 916, 990, 1139
Esp3I CGTCTC 1 cut(s) 930
FaeI CATG 4 cut(s) 344, 501, 695, 920
FalI AAGNNNNNCTT 2 cut(s) 1112, 1144
FatI CATG 4 cut(s) 340, 497, 691, 916
FbaI TGATCA 1 cut(s) 226
Fnu4HI GCNGC 3 cut(s) 122, 168, 840
FokI GGATG 3 cut(s) 90, 335, 682
Fsp4HI GCNGC 3 cut(s) 122, 168, 840
FspBI CTAG 7 cut(s) 177, 584, 603, 846, 957, 974, 1013
GlaI GCGC 2 cut(s) 120, 1049
GluI GCNGC 3 cut(s) 122, 168, 840
GsuI CTGGAG 1 cut(s) 183
HaeIII GGCC 1 cut(s) 922
HapII CCGG 1 cut(s) 217
HgaI GACGC 2 cut(s) 2, 1025
HhaI GCGC 2 cut(s) 121, 1050
Hin1II CATG 4 cut(s) 344, 501, 695, 920
Hin6I GCGC 2 cut(s) 119, 1048
HinP1I GCGC 2 cut(s) 119, 1048
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 4 cut(s) 103, 391, 752, 1094
HpaII CCGG 1 cut(s) 217
HphI GGTGA 3 cut(s) 713, 727, 901
Hpy166II GTNNAC 4 cut(s) 305, 577, 898, 1198
Hpy188I TCNGA 9 cut(s) 18, 60, 133, 190, 240, 274, 360, 472, 545
Hpy188III TCNNGA 4 cut(s) 444, 514, 1013, 1322
Hpy8I GTNNAC 4 cut(s) 305, 577, 898, 1198
Hpy99I CGWCG 1 cut(s) 18
HpyAV CCTTC 5 cut(s) 373, 581, 786, 991, 1214
HpyCH4III ACNGT 2 cut(s) 25, 1299
HpyCH4V TGCA 9 cut(s) 209, 305, 459, 648, 839, 856, 932, 998, 1174
HpyF10VI GCNNNNNNNGC 6 cut(s) 173, 447, 456, 986, 995, 1016
HpyF3I CTNAG 3 cut(s) 317, 1051, 1228
Hsp92II CATG 4 cut(s) 344, 501, 695, 920
HspAI GCGC 2 cut(s) 119, 1048
Ksp22I TGATCA 1 cut(s) 226
LmnI GCTCC 5 cut(s) 152, 164, 327, 673, 977
Lsp1109I GCAGC 2 cut(s) 179, 851
LweI GCATC 3 cut(s) 437, 767, 1153
MaeI CTAG 7 cut(s) 177, 584, 603, 846, 957, 974, 1013
MaeIII GTNAC 7 cut(s) 370, 493, 677, 701, 1163, 1223, 1290
MboII GAAGA 4 cut(s) 435, 771, 1139, 1204
MfeI CAATTG 1 cut(s) 452
MflI RGATCY 3 cut(s) 50, 908, 1324
MhlI GDGCHC 1 cut(s) 307
MluCI AATT 7 cut(s) 195, 396, 452, 718, 801, 968, 1155
MmeI TCCRAC 4 cut(s) 127, 334, 376, 442
MseI TTAA 6 cut(s) 686, 708, 723, 747, 1109, 1357
MspI CCGG 1 cut(s) 217
MspR9I CCNGG 4 cut(s) 111, 218, 256, 561
MunI CAATTG 1 cut(s) 452
MvaI CCWGG 3 cut(s) 111, 256, 561
MvnI CGCG 2 cut(s) 13, 121
MwoI GCNNNNNNNGC 6 cut(s) 173, 447, 456, 986, 995, 1016
NciI CCSGG 1 cut(s) 218
NcoI CCATGG 1 cut(s) 916
NlaIII CATG 4 cut(s) 344, 501, 695, 920
NlaIV GGNNCC 7 cut(s) 215, 253, 346, 869, 979, 1125, 1258
NmuCI GTSAC 2 cut(s) 370, 701
NspI RCATGY 1 cut(s) 501
PciI ACATGT 1 cut(s) 497
PfeI GAWTC 4 cut(s) 103, 391, 752, 1094
PkrI GCNGC 3 cut(s) 123, 169, 841
Ple19I CGATCG 1 cut(s) 174
PscI ACATGT 1 cut(s) 497
Psp6I CCWGG 3 cut(s) 109, 254, 559
PspGI CCWGG 3 cut(s) 109, 254, 559
PspN4I GGNNCC 7 cut(s) 215, 253, 346, 869, 979, 1125, 1258
PspPI GGNCC 2 cut(s) 133, 920
PstI CTGCAG 1 cut(s) 841
PstNI CAGNNNCTG 1 cut(s) 796
PsuI RGATCY 3 cut(s) 50, 908, 1324
PvuI CGATCG 1 cut(s) 174
RgaI GCGATCGC 1 cut(s) 174
RsaI GTAC 4 cut(s) 22, 955, 1115, 1153
RsaNI GTAC 4 cut(s) 21, 954, 1114, 1152
SaqAI TTAA 6 cut(s) 686, 708, 723, 747, 1109, 1357
SatI GCNGC 3 cut(s) 122, 168, 840
Sau96I GGNCC 2 cut(s) 133, 920
ScaI AGTACT 1 cut(s) 1115
ScrFI CCNGG 4 cut(s) 111, 218, 256, 561
SduI GDGCHC 1 cut(s) 307
SfaAI GCGATCGC 1 cut(s) 174
SfaNI GCATC 3 cut(s) 437, 767, 1153
SfcI CTRYAG 2 cut(s) 402, 837
SgfI GCGATCGC 1 cut(s) 174
SinI GGWCC 1 cut(s) 133
SpeI ACTAGT 1 cut(s) 956
Sse9I AATT 7 cut(s) 195, 396, 452, 718, 801, 968, 1155
SsiI CCGC 2 cut(s) 121, 203
SspMI CTAG 7 cut(s) 177, 584, 603, 846, 957, 974, 1013
StyD4I CCNGG 4 cut(s) 109, 216, 254, 559
StyI CCWWGG 3 cut(s) 916, 990, 1139
TaaI ACNGT 2 cut(s) 25, 1299
TaqI TCGA 2 cut(s) 101, 394
TasI AATT 7 cut(s) 195, 396, 452, 718, 801, 968, 1155
TatI WGTACW 2 cut(s) 20, 1113
TauI GCSGC 1 cut(s) 124
TfiI GAWTC 4 cut(s) 103, 391, 752, 1094
Tru1I TTAA 6 cut(s) 686, 708, 723, 747, 1109, 1357
Tru9I TTAA 6 cut(s) 686, 708, 723, 747, 1109, 1357
TscAI CASTG 2 cut(s) 1005, 1050
TseFI GTSAC 2 cut(s) 370, 701
TseI GCWGC 2 cut(s) 167, 839
Tsp45I GTSAC 2 cut(s) 370, 701
TspDTI ATGAA 2 cut(s) 872, 1205
TspGWI ACGGA 1 cut(s) 941
TspRI CASTG 2 cut(s) 1005, 1050
VneI GTGCAC 1 cut(s) 303
VpaK11BI GGWCC 1 cut(s) 133
XapI RAATTY 3 cut(s) 396, 718, 968
XbaI TCTAGA 1 cut(s) 1012
XceI RCATGY 1 cut(s) 501
XspI CTAG 7 cut(s) 177, 584, 603, 846, 957, 974, 1013
ZrmI AGTACT 1 cut(s) 1115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.