Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004198

Physical Location & Seq

Genomic Coordinates Reverse (-)

33124778 .. 33125486

Gene Structure 709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0310500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAAGTATAAGCCTCAAGCTTATTCATTTGCCGCGGATTTTATGAACTTAATTAGAGAGGAGGTCAGGAATCAGGAGAGCACTAGCGAGGTGGTGAATGCTAACTACTCAGCTGCATTGTTGGGATTAGCATATGGAGACACTGATCTTGTGGCCACAGGGTCAATGCTTGCAGCATTGGAAATCCAGGCAGCTCAAATGTGGTGCCATCGGAGAGAGTGCCTGCTTGGAATCCAGCTGCTGCCTATTGTACCTATTACTGAGGAATTGTTCTCTGATGTTGGCTATGTTAGGGAACTTGTGAAGTGGACTGAACCGGCTCTTATTAGAGAGGGTGTTGGGGAAGGATGGAAAGGGTTTGTGTACTCTTTGCAAGGGATTTATGACAAGAATGGTGCTTTGAATGGTCACGATGATGGCAACTCGCTTACGAATCTGTTATGGTGGATCAACAGCAGAGGTGAGGAAAGAGATGGATGCCAAGTCGGAGAGAAGATTTGCTCAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000228 GO:0000280 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070192 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Rad51

Protein Analysis

169

Amino Acids

18.82

Weight (kDa)

4.68

Isoelectric Point (pI)

27.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro81C	PF17652	20 - 70	1.1e-09	Glycosyl hydrolase family 81 C-terminal domain
Glyco_hydro81C	PF17652	70 - 136	3.3e-10	Glycosyl hydrolase family 81 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22880 AT3G22880
fragaria_vesca	FvH4_4g03620 FvH4_4g03620 FvH4_4g03740 FvH4_4g03740 FvH4_4g03740
malus_domestica	MD16G1200300.v1.1
prunus_persica	Prupe.1G022500_v2.0.a1 Prupe.1G022500_v2.0.a1
pyrus_communis	pycom16g16950
rosa_chinensis	RchiOBHm_Chr4g0392991 RchiOBHm_Chr4g0393441 RchiOBHm_Chr4g0393481
rosa_laevigata	RLG00000009753 RLG00000009756 RLG00000009776 RLG00000010122
rosa_multiflora	Rmu_sc0008339.1_g000015 Rmu_sc0008931.1_g000008 Rmu_sc0012965.1_g000002
rosa_roxburghii	Rroxscaffold_5G00338100 Rroxscaffold_5G00338400
rosa_rugosa	Rorug03G0309300 Rorug03G0310500 Rorug04G0001200 Rorug04G0001300 Rorug04G0001700 Rorug04G0003100
rosa_samantha	Rh4CG016900
rosa_wichuraiana	Rw4G003560 Rw4G003710 Rw4G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	204
AccII	CGCG	1 cut(s)	35
AciI	CCGC	2 cut(s)	33, 35
AclWI	GGATC	1 cut(s)	455
AcoI	YGGCCR	1 cut(s)	153
AfaI	GTAC	2 cut(s)	252, 365
AgsI	TTSAA	1 cut(s)	403
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	4 cut(s)	20, 113, 194, 238
AluI	AGCT	4 cut(s)	20, 113, 194, 238
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	455
AlwNI	CAGNNNCTG	1 cut(s)	241
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	5 cut(s)	113, 173, 191, 238, 241
AsuHPI	GGTGA	2 cut(s)	106, 473
BalI	TGGCCA	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	5 cut(s)	100, 185, 203, 225, 228
BccI	CCATC	4 cut(s)	216, 342, 410, 467
BciT130I	CCWGG	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	1 cut(s)	84
BisI	GCNGC	6 cut(s)	33, 114, 174, 192, 239, 242
BlsI	GCNGC	6 cut(s)	34, 115, 175, 193, 240, 243
Bme1390I	CCNGG	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	1 cut(s)	467
BsaJI	CCNNGG	1 cut(s)	33
Bse118I	RCCGGY	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	2 cut(s)	353, 482
BseMII	CTCAG	2 cut(s)	123, 252
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	5 cut(s)	100, 185, 203, 225, 228
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	317
BsmAI	GTCTC	1 cut(s)	132
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	145, 447
BspACI	CCGC	2 cut(s)	33, 35
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	2 cut(s)	122, 253
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	206
BspPI	GGATC	1 cut(s)	455
BspT107I	GGYRCC	1 cut(s)	204
BsrFI	RCCGGY	1 cut(s)	316
BssAI	RCCGGY	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	2 cut(s)	145, 447
Bst2UI	CCWGG	1 cut(s)	188
BstC8I	GCNNGC	2 cut(s)	171, 224
BstDEI	CTNAG	3 cut(s)	109, 261, 502
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	2 cut(s)	353, 482
BstFNI	CGCG	1 cut(s)	35
BstKTI	GATC	2 cut(s)	148, 450
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	2 cut(s)	145, 447
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	186
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	5 cut(s)	100, 185, 203, 225, 228
BsuRI	GGCC	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	2 cut(s)	353, 482
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	2 cut(s)	171, 224
CaiI	CAGNNNCTG	1 cut(s)	241
Cfr10I	RCCGGY	1 cut(s)	316
Cfr42I	CCGCGG	1 cut(s)	36
Csp6I	GTAC	2 cut(s)	251, 364
CviJI	RGCY	8 cut(s)	13, 20, 113, 155, 194, 238, 285, 320
CviKI_1	RGCY	8 cut(s)	13, 20, 113, 155, 194, 238, 285, 320
CviQI	GTAC	2 cut(s)	251, 364
DdeI	CTNAG	3 cut(s)	109, 261, 502
DpnI	GATC	2 cut(s)	147, 449
DpnII	GATC	2 cut(s)	145, 447
EaeI	YGGCCR	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	186
FaiI	YATR	7 cut(s)	9, 44, 133, 135, 288, 384, 442
FauNDI	CATATG	1 cut(s)	133
Fnu4HI	GCNGC	6 cut(s)	33, 114, 174, 192, 239, 242
FokI	GGATG	2 cut(s)	360, 489
Fsp4HI	GCNGC	6 cut(s)	33, 114, 174, 192, 239, 242
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	6 cut(s)	33, 114, 174, 192, 239, 242
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	1 cut(s)	317
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	3 cut(s)	70, 231, 433
HpaII	CCGG	1 cut(s)	317
HphI	GGTGA	2 cut(s)	106, 473
Hpy166II	GTNNAC	2 cut(s)	309, 364
Hpy188I	TCNGA	3 cut(s)	213, 277, 488
Hpy188III	TCNNGA	3 cut(s)	67, 74, 410
Hpy8I	GTNNAC	2 cut(s)	309, 364
HpyAV	CCTTC	1 cut(s)	338
HpyCH4V	TGCA	3 cut(s)	116, 173, 373
HpyF3I	CTNAG	3 cut(s)	109, 261, 502
KspI	CCGCGG	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	145, 447
LpnPI	CCDG	8 cut(s)	52, 59, 144, 173, 200, 236, 248, 330
Lsp1109I	GCAGC	5 cut(s)	100, 185, 203, 225, 228
LweI	GCATC	1 cut(s)	467
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	2 cut(s)	147, 449
MboI	GATC	2 cut(s)	145, 447
MboII	GAAGA	1 cut(s)	505
MhlI	GDGCHC	1 cut(s)	83
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	2 cut(s)	51, 266
MluNI	TGGCCA	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	466
MnlI	CCTC	8 cut(s)	24, 52, 55, 82, 256, 325, 452, 457
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	1 cut(s)	50
MslI	CAYNNNNRTG	1 cut(s)	414
Msp20I	TGGCCA	1 cut(s)	155
MspA1I	CMGCKG	3 cut(s)	35, 113, 238
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	188
Mva1269I	GAATGC	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	35
NdeI	CATATG	1 cut(s)	133
NdeII	GATC	2 cut(s)	145, 447
NlaIV	GGNNCC	1 cut(s)	206
NmuCI	GTSAC	1 cut(s)	407
PctI	GAATGC	1 cut(s)	103
PfeI	GAWTC	3 cut(s)	70, 231, 433
PkrI	GCNGC	6 cut(s)	34, 115, 175, 193, 240, 243
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	206
PstNI	CAGNNNCTG	1 cut(s)	241
PvuII	CAGCTG	2 cut(s)	113, 238
RsaI	GTAC	2 cut(s)	252, 365
RsaNI	GTAC	2 cut(s)	251, 364
RseI	CAYNNNNRTG	1 cut(s)	414
SacII	CCGCGG	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	6 cut(s)	33, 114, 174, 192, 239, 242
Sau3AI	GATC	2 cut(s)	145, 447
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	8 cut(s)	22, 66, 93, 115, 196, 240, 256, 463
SfaNI	GCATC	1 cut(s)	467
Sfr303I	CCGCGG	1 cut(s)	36
SgrBI	CCGCGG	1 cut(s)	36
SmiMI	CAYNNNNRTG	1 cut(s)	414
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
Sse9I	AATT	2 cut(s)	51, 266
SsiI	CCGC	2 cut(s)	33, 35
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	186
TasI	AATT	2 cut(s)	51, 266
TatI	WGTACW	1 cut(s)	363
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	3 cut(s)	70, 231, 433
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	5 cut(s)	113, 173, 191, 238, 241
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	3 cut(s)	15, 17, 59
TspRI	CASTG	1 cut(s)	148
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.