Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0004198

Physical Location & Seq

Genomic Coordinates Forward (+)

7240331 .. 7243010

Gene Structure 2680 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G003710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGGGATATATGGACTCATGCTATATGCGCGTCCTGCAATTAACCGGCCAACGGCACCACCAGTTGAAGAAGATTTAGAGCTGGTCAAGGCTATTGATGCCTCCATCCAGTCTGCTTTGCAGGAGAGGCCGCCCTTGTCTGATGCACTCCGAATCCATGAAACAATTGCATCAAGTAGTTCGAGAATTAAAGGTTTATCTGAGGCCAAAGTTGATAAGATGTGTGAAGCTGCTGAGAAAATAGTGAACTTCGGATATATTACTGGGAGTGATGCTATAACCAGAATCGTTTATGCTCGTGCTTTTACATATGAGCATCAGTATAATCTGCTTCTTGGTCTAGCTGCAAAAATGGCTGAAGAGCCATTCAGACTTCTGATTGTGGACTCGGTGATTGCTCTATTTCGTGTTGATTTTACTGGGAGAGGAGAGCATGCAGATCGCCAGCAAAAACTTGCACAGATGCTTTCCCGATTAATAAAGATTGCTGAGGAATTCAATGTCGCTGTCTATATGACCAACCAAGTGATAGCTGACCCCGGTGGTGGAGTGTTCATATCTGATCCAAAGAAACCAGCAGGAGGTCATGTGCTCGCCCATGCAGCAACCATAAGGCTCATGTTTAGGAAAGGCAAAGGGGAACAGCGTGTCTGCAAGATAACTGCAGGAGGCATTGCAGATGCAAAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000228 GO:0000280 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070192 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Rad51

Protein Analysis

230

Amino Acids

25.14

Weight (kDa)

8.47

Isoelectric Point (pI)

30.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	87 - 222	2e-57	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22880 AT3G22880
fragaria_vesca	FvH4_4g03620 FvH4_4g03620 FvH4_4g03740 FvH4_4g03740 FvH4_4g03740
malus_domestica	MD16G1200300.v1.1
prunus_persica	Prupe.1G022500_v2.0.a1 Prupe.1G022500_v2.0.a1
pyrus_communis	pycom16g16950
rosa_chinensis	RchiOBHm_Chr4g0392991 RchiOBHm_Chr4g0393441 RchiOBHm_Chr4g0393481
rosa_laevigata	RLG00000009753 RLG00000009756 RLG00000009776 RLG00000010122
rosa_multiflora	Rmu_sc0008339.1_g000015 Rmu_sc0008931.1_g000008 Rmu_sc0012965.1_g000002
rosa_roxburghii	Rroxscaffold_5G00338100 Rroxscaffold_5G00338400
rosa_rugosa	Rorug03G0309300 Rorug03G0310500 Rorug04G0001200 Rorug04G0001300 Rorug04G0001700 Rorug04G0003100
rosa_samantha	Rh4CG016900
rosa_wichuraiana	Rw4G003560 Rw4G003710 Rw4G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	55
AccII	CGCG	1 cut(s)	31
AciI	CCGC	1 cut(s)	131
AclWI	GGATC	1 cut(s)	557
AcoI	YGGCCR	1 cut(s)	47
AcsI	RAATTY	1 cut(s)	494
AcuI	CTGAAG	1 cut(s)	378
AfiI	CCNNNNNNNGG	3 cut(s)	52, 545, 581
AgsI	TTSAA	2 cut(s)	68, 499
AluBI	AGCT	4 cut(s)	82, 230, 344, 533
AluI	AGCT	4 cut(s)	82, 230, 344, 533
Alw21I	GWGCWC	1 cut(s)	594
AlwI	GGATC	1 cut(s)	557
AoxI	GGCC	3 cut(s)	47, 128, 204
ApeKI	GCWGC	3 cut(s)	230, 344, 602
ApoI	RAATTY	1 cut(s)	494
AseI	ATTAAT	1 cut(s)	476
AspLEI	GCGC	1 cut(s)	31
AsuC2I	CCSGG	1 cut(s)	540
AsuHPI	GGTGA	1 cut(s)	403
BanI	GGYRCC	1 cut(s)	55
BauI	CACGAG	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	594
BbvCI	CCTCAGC	1 cut(s)	489
BbvI	GCAGC	3 cut(s)	217, 331, 614
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	1 cut(s)	69
BcgI	CGANNNNNNTGC	2 cut(s)	422, 456
BcnI	CCSGG	1 cut(s)	540
BfaI	CTAG	1 cut(s)	341
BfmI	CTRYAG	1 cut(s)	663
BisI	GCNGC	4 cut(s)	131, 231, 345, 603
BlsI	GCNGC	4 cut(s)	132, 232, 346, 604
Bme1390I	CCNGG	1 cut(s)	540
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	540
BmrI	ACTGGG	2 cut(s)	273, 429
BmsI	GCATC	7 cut(s)	88, 133, 179, 262, 325, 453, 670
BmuI	ACTGGG	2 cut(s)	273, 429
Bpu10I	CCTNAGC	1 cut(s)	489
BpuMI	CCSGG	1 cut(s)	540
BsaJI	CCNNGG	1 cut(s)	538
BsaXI	ACNNNNNCTCC	2 cut(s)	573, 603
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 545, 581
Bse118I	RCCGGY	1 cut(s)	45
Bse1I	ACTGG	4 cut(s)	62, 109, 268, 424
Bse3DI	GCAATG	1 cut(s)	672
BseDI	CCNNGG	1 cut(s)	538
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	3 cut(s)	52, 545, 581
BseMI	GCAATG	1 cut(s)	672
BseMII	CTCAG	3 cut(s)	192, 225, 480
BseNI	ACTGG	4 cut(s)	62, 109, 268, 424
BseRI	GAGGAG	1 cut(s)	441
BseXI	GCAGC	3 cut(s)	217, 331, 614
Bsh1236I	CGCG	1 cut(s)	31
BshFI	GGCC	3 cut(s)	49, 130, 206
BshNI	GGYRCC	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	594
BsiSI	CCGG	2 cut(s)	46, 540
BslI	CCNNNNNNNGG	3 cut(s)	52, 545, 581
BsnI	GGCC	3 cut(s)	49, 130, 206
Bsp1286I	GDGCHC	1 cut(s)	594
Bsp143I	GATC	2 cut(s)	439, 562
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	3 cut(s)	49, 130, 206
BspCNI	CTCAG	3 cut(s)	193, 226, 481
BspFNI	CGCG	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	57
BspMAI	CTGCAG	1 cut(s)	667
BspPI	GGATC	1 cut(s)	557
BspQI	GCTCTTC	1 cut(s)	354
BspT107I	GGYRCC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	672
BsrFI	RCCGGY	1 cut(s)	45
BsrI	ACTGG	4 cut(s)	62, 109, 268, 424
BssAI	RCCGGY	1 cut(s)	45
BssECI	CCNNGG	1 cut(s)	538
BssMI	GATC	2 cut(s)	439, 562
BssSI	CACGAG	1 cut(s)	297
Bst2BI	CACGAG	1 cut(s)	297
Bst6I	CTCTTC	1 cut(s)	354
BstC8I	GCNNGC	3 cut(s)	435, 446, 594
BstDEI	CTNAG	3 cut(s)	201, 234, 489
BstF5I	GGATG	1 cut(s)	105
BstFNI	CGCG	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	2 cut(s)	442, 565
BstMBI	GATC	2 cut(s)	439, 562
BstMWI	GCNNNNNNNGC	6 cut(s)	28, 35, 98, 127, 353, 602
BstNSI	RCATGY	1 cut(s)	437
BstSCI	CCNGG	1 cut(s)	538
BstSFI	CTRYAG	1 cut(s)	663
BstUI	CGCG	1 cut(s)	31
BstV1I	GCAGC	3 cut(s)	217, 331, 614
BsuRI	GGCC	3 cut(s)	49, 130, 206
BtsCI	GGATG	1 cut(s)	105
Cac8I	GCNNGC	3 cut(s)	435, 446, 594
CfoI	GCGC	1 cut(s)	31
Cfr10I	RCCGGY	1 cut(s)	45
CseI	GACGC	1 cut(s)	20
CviAII	CATG	6 cut(s)	19, 158, 434, 587, 599, 619
DdeI	CTNAG	3 cut(s)	201, 234, 489
DpnI	GATC	2 cut(s)	441, 564
DpnII	GATC	2 cut(s)	439, 562
EaeI	YGGCCR	1 cut(s)	47
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco57I	CTGAAG	1 cut(s)	378
EcoRI	GAATTC	1 cut(s)	494
FaeI	CATG	6 cut(s)	22, 161, 437, 590, 602, 622
FatI	CATG	6 cut(s)	18, 157, 433, 586, 598, 618
FauNDI	CATATG	1 cut(s)	310
Fnu4HI	GCNGC	4 cut(s)	131, 231, 345, 603
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	4 cut(s)	131, 231, 345, 603
FspBI	CTAG	1 cut(s)	341
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	4 cut(s)	131, 231, 345, 603
HaeIII	GGCC	3 cut(s)	49, 130, 206
HapII	CCGG	2 cut(s)	46, 540
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	6 cut(s)	22, 161, 437, 590, 602, 622
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HinfI	GANTC	4 cut(s)	15, 153, 285, 386
HpaII	CCGG	2 cut(s)	46, 540
HphI	GGTGA	1 cut(s)	403
Hpy166II	GTNNAC	2 cut(s)	247, 385
Hpy188I	TCNGA	7 cut(s)	142, 152, 202, 254, 371, 378, 562
Hpy188III	TCNNGA	2 cut(s)	183, 471
Hpy8I	GTNNAC	2 cut(s)	247, 385
HpyF10VI	GCNNNNNNNGC	6 cut(s)	28, 35, 98, 127, 353, 602
HpyF3I	CTNAG	3 cut(s)	201, 234, 489
Hsp92II	CATG	6 cut(s)	22, 161, 437, 590, 602, 622
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	2 cut(s)	439, 562
LguI	GCTCTTC	1 cut(s)	354
Lsp1109I	GCAGC	3 cut(s)	217, 331, 614
LweI	GCATC	7 cut(s)	88, 133, 179, 262, 325, 453, 670
MaeI	CTAG	1 cut(s)	341
MalI	GATC	2 cut(s)	441, 564
MboI	GATC	2 cut(s)	439, 562
MboII	GAAGA	3 cut(s)	80, 83, 371
MfeI	CAATTG	1 cut(s)	165
MhlI	GDGCHC	1 cut(s)	594
MluCI	AATT	4 cut(s)	39, 165, 186, 494
MlyI	GAGTC	2 cut(s)	9, 380
MnlI	CCTC	7 cut(s)	112, 120, 196, 419, 484, 575, 662
MseI	TTAA	3 cut(s)	42, 189, 476
MspI	CCGG	2 cut(s)	46, 540
MspR9I	CCNGG	1 cut(s)	540
MunI	CAATTG	1 cut(s)	165
MvnI	CGCG	1 cut(s)	31
MwoI	GCNNNNNNNGC	6 cut(s)	28, 35, 98, 127, 353, 602
NciI	CCSGG	1 cut(s)	540
NdeI	CATATG	1 cut(s)	310
NdeII	GATC	2 cut(s)	439, 562
NlaIII	CATG	6 cut(s)	22, 161, 437, 590, 602, 622
NlaIV	GGNNCC	1 cut(s)	57
NspI	RCATGY	1 cut(s)	437
PaeI	GCATGC	1 cut(s)	437
PciSI	GCTCTTC	1 cut(s)	354
PfeI	GAWTC	2 cut(s)	153, 285
PkrI	GCNGC	4 cut(s)	132, 232, 346, 604
PleI	GAGTC	2 cut(s)	9, 380
PpsI	GAGTC	2 cut(s)	9, 380
PshBI	ATTAAT	1 cut(s)	476
PspN4I	GGNNCC	1 cut(s)	57
PstI	CTGCAG	1 cut(s)	667
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	3 cut(s)	42, 189, 476
SatI	GCNGC	4 cut(s)	131, 231, 345, 603
Sau3AI	GATC	2 cut(s)	439, 562
SchI	GAGTC	2 cut(s)	9, 380
ScrFI	CCNGG	1 cut(s)	540
SduI	GDGCHC	1 cut(s)	594
SetI	ASST	6 cut(s)	84, 196, 232, 346, 535, 586
SfaNI	GCATC	7 cut(s)	88, 133, 179, 262, 325, 453, 670
SfcI	CTRYAG	1 cut(s)	663
SphI	GCATGC	1 cut(s)	437
Sse9I	AATT	4 cut(s)	39, 165, 186, 494
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	341
StyD4I	CCNGG	1 cut(s)	538
TaqI	TCGA	1 cut(s)	182
TasI	AATT	4 cut(s)	39, 165, 186, 494
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	2 cut(s)	153, 285
Tru1I	TTAA	3 cut(s)	42, 189, 476
Tru9I	TTAA	3 cut(s)	42, 189, 476
TseI	GCWGC	3 cut(s)	230, 344, 602
TspDTI	ATGAA	2 cut(s)	174, 544
VspI	ATTAAT	1 cut(s)	476
XapI	RAATTY	1 cut(s)	494
XceI	RCATGY	1 cut(s)	437
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.