Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008931.1

Orthogroup ID

OG0004198

Physical Location & Seq

Genomic Coordinates Reverse (-)

40148 .. 43245

Gene Structure 3098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008931.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

atgaaacgccatcgttttggtccattcccgctctataaattgacatcccctcccattcctctgaaattcaaatttcagatactctctctccacatctctctaagatttccactctccggaaacatccacaagtcgccgtttcgtcaacctaaaccacagcaagcgaagatgaaagccgaagatcaaagccagatgcagctcgtcgaacgcgaagacatcgacgatgaagacgacctcttcgaagccatcgataagctgattgctcagggaatcaatgccggagatgtaaagaagcttcaggatgctgggatctacacctgcaatggtttgatgatgcacaccaagaagaacttgactggaattaaaggcttatctgaggccaaagttgataagatttgtgaagctgctgagaagatagtgaactttggatatataactggaagtgatgctctaaccagaaggaagtctgtgattcgcattacaactgggagccaagcacttgatgaactattaggcggaggggttgaaactctagcaatcacagaagcctttggggagtttcggtctgggaaaacacagcttgcacacacactctgcgtaactacacagcttcctactaacatgcatggagggaatggaaaggttgcttacattgatactgagggaacattccggcctgaacgaattatacctatagctgaaagattcggcttggacccaggagctgttctcgacaatatcgtttatgctcgtgcttttacatatgagcatcagtataatctgcttcttggtctagctgcaaaaatggctgaagagccattcagacttctgattgtggactcggtgattgctctatttcgtgttgattttactgggagaggagagcttgcagatcgccagcaaaaacttgcacagatgctttcccgattaataaagattgctgaggaattcaatgtcgctgtctatatgaccaaccaagtgatagctgaccccggtggtggagtgttcatatctgatccaaagaaaccagcaggaggtcatgtgctcgcccatgcagcaaccataaggctcatgtttagaaaaggcaaaggggaacagcgtgtctgcaaggtgtttgatgccccaaacctgcctgaggctgaagcaatatccttctcatttgctttattgatatactttatgacttctatcattacctgcatcatcctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000228 GO:0000280 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070192 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Rad51

Protein Analysis

403

Amino Acids

44.63

Weight (kDa)

8.63

Isoelectric Point (pI)

31.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22880 AT3G22880
fragaria_vesca	FvH4_4g03620 FvH4_4g03620 FvH4_4g03740 FvH4_4g03740 FvH4_4g03740
malus_domestica	MD16G1200300.v1.1
prunus_persica	Prupe.1G022500_v2.0.a1 Prupe.1G022500_v2.0.a1
pyrus_communis	pycom16g16950
rosa_chinensis	RchiOBHm_Chr4g0392991 RchiOBHm_Chr4g0393441 RchiOBHm_Chr4g0393481
rosa_laevigata	RLG00000009753 RLG00000009756 RLG00000009776 RLG00000010122
rosa_multiflora	Rmu_sc0008339.1_g000015 Rmu_sc0008931.1_g000008 Rmu_sc0012965.1_g000002
rosa_roxburghii	Rroxscaffold_5G00338100 Rroxscaffold_5G00338400
rosa_rugosa	Rorug03G0309300 Rorug03G0310500 Rorug04G0001200 Rorug04G0001300 Rorug04G0001700 Rorug04G0003100
rosa_samantha	Rh4CG016900
rosa_wichuraiana	Rw4G003560 Rw4G003710 Rw4G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	326
Acc36I	ACCTGC	3 cut(s)	326, 1137, 1205
AccBSI	CCGCTC	1 cut(s)	31
AccII	CGCG	1 cut(s)	210
AccIII	TCCGGA	1 cut(s)	116
AciI	CCGC	2 cut(s)	29, 516
AclWI	GGATC	2 cut(s)	317, 1010
AcsI	RAATTY	3 cut(s)	65, 71, 947
AcuI	CTGAAG	3 cut(s)	281, 831, 1161
AfiI	CCNNNNNNNGG	4 cut(s)	116, 998, 1034, 1135
AgsI	TTSAA	3 cut(s)	70, 527, 952
AjnI	CCWGG	1 cut(s)	718
Alw21I	GWGCWC	1 cut(s)	1047
AlwI	GGATC	2 cut(s)	317, 1010
AlwNI	CAGNNNCTG	1 cut(s)	725
Aor13HI	TCCGGA	1 cut(s)	116
AoxI	GGCC	2 cut(s)	378, 674
ApeKI	GCWGC	4 cut(s)	196, 404, 797, 1055
ApoI	RAATTY	3 cut(s)	65, 71, 947
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AseI	ATTAAT	1 cut(s)	929
AspS9I	GGNCC	2 cut(s)	20, 715
AsuC2I	CCSGG	1 cut(s)	993
AsuHPI	GGTGA	1 cut(s)	856
AsuII	TTCGAA	1 cut(s)	240
AvaII	GGWCC	2 cut(s)	20, 715
AxyI	CCTNAGG	1 cut(s)	1134
BarI	GAAGNNNNNNTAC	2 cut(s)	279, 311
BauI	CACGAG	1 cut(s)	750
BbsI	GAAGAC	2 cut(s)	219, 234
Bbv12I	GWGCWC	1 cut(s)	1047
BbvCI	CCTCAGC	1 cut(s)	942
BbvI	GCAGC	4 cut(s)	208, 391, 784, 1067
BccI	CCATC	2 cut(s)	18, 254
BceAI	ACGGC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	720
BcnI	CCSGG	1 cut(s)	993
BfaI	CTAG	2 cut(s)	533, 794
BfmI	CTRYAG	1 cut(s)	693
BfuAI	ACCTGC	3 cut(s)	326, 1137, 1205
BisI	GCNGC	4 cut(s)	197, 405, 798, 1056
BlsI	GCNGC	4 cut(s)	198, 406, 799, 1057
Bme1390I	CCNGG	2 cut(s)	720, 993
Bme18I	GGWCC	2 cut(s)	20, 715
BmgT120I	GGNCC	2 cut(s)	20, 715
BmiI	GGNNCC	2 cut(s)	491, 717
BmrFI	CCNGG	2 cut(s)	720, 993
BmrI	ACTGGG	2 cut(s)	495, 882
BmsI	GCATC	7 cut(s)	183, 292, 324, 436, 778, 906, 1108
BmuI	ACTGGG	2 cut(s)	495, 882
BpiI	GAAGAC	2 cut(s)	219, 234
BplI	GAGNNNNNCTC	2 cut(s)	714, 746
Bpu10I	CCTNAGC	2 cut(s)	264, 942
Bpu14I	TTCGAA	1 cut(s)	240
BpuMI	CCSGG	1 cut(s)	993
Bsa29I	ATCGAT	1 cut(s)	249
BsaJI	CCNNGG	2 cut(s)	718, 991
BsaWI	WCCGGW	1 cut(s)	116
BsaXI	ACNNNNNCTCC	8 cut(s)	34, 64, 72, 102, 548, 578, 1026, 1056
Bsc4I	CCNNNNNNNGG	4 cut(s)	116, 998, 1034, 1135
Bse1I	ACTGG	4 cut(s)	361, 442, 490, 877
Bse21I	CCTNAGG	1 cut(s)	1134
Bse3DI	GCAATG	1 cut(s)	328
BseAI	TCCGGA	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	720
BseCI	ATCGAT	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	718, 991
BseGI	GGATG	4 cut(s)	44, 123, 307, 1203
BseLI	CCNNNNNNNGG	4 cut(s)	116, 998, 1034, 1135
BseMI	GCAATG	1 cut(s)	328
BseMII	CTCAG	6 cut(s)	278, 366, 399, 651, 933, 1125
BseNI	ACTGG	4 cut(s)	361, 442, 490, 877
BseRI	GAGGAG	1 cut(s)	894
BseXI	GCAGC	4 cut(s)	208, 391, 784, 1067
BseYI	CCCAGC	1 cut(s)	305
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	2 cut(s)	380, 676
BshVI	ATCGAT	1 cut(s)	249
BsiHKAI	GWGCWC	1 cut(s)	1047
BsiSI	CCGG	4 cut(s)	117, 279, 673, 993
BslI	CCNNNNNNNGG	4 cut(s)	116, 998, 1034, 1135
BsnI	GGCC	2 cut(s)	380, 676
Bsp119I	TTCGAA	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	1047
Bsp13I	TCCGGA	1 cut(s)	116
Bsp143I	GATC	4 cut(s)	181, 309, 892, 1015
BspACI	CCGC	2 cut(s)	29, 516
BspANI	GGCC	2 cut(s)	380, 676
BspCNI	CTCAG	6 cut(s)	277, 367, 400, 652, 934, 1126
BspDI	ATCGAT	1 cut(s)	249
BspEI	TCCGGA	1 cut(s)	116
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	491, 717
BspMI	ACCTGC	3 cut(s)	326, 1137, 1205
BspPI	GGATC	2 cut(s)	317, 1010
BspQI	GCTCTTC	1 cut(s)	807
BspT104I	TTCGAA	1 cut(s)	240
BsrBI	CCGCTC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	328
BsrI	ACTGG	4 cut(s)	361, 442, 490, 877
BssECI	CCNNGG	2 cut(s)	718, 991
BssMI	GATC	4 cut(s)	181, 309, 892, 1015
BssSI	CACGAG	1 cut(s)	750
Bst2BI	CACGAG	1 cut(s)	750
Bst2UI	CCWGG	1 cut(s)	720
Bst6I	CTCTTC	2 cut(s)	242, 807
BstBI	TTCGAA	1 cut(s)	240
BstC8I	GCNNGC	5 cut(s)	162, 582, 888, 899, 1047
BstDEI	CTNAG	7 cut(s)	101, 264, 375, 408, 660, 942, 1134
BstENI	CCTNNNNNAGG	1 cut(s)	1133
BstF5I	GGATG	4 cut(s)	44, 123, 307, 1203
BstFNI	CGCG	1 cut(s)	210
BstKTI	GATC	4 cut(s)	184, 312, 895, 1018
BstMBI	GATC	4 cut(s)	181, 309, 892, 1015
BstMWI	GCNNNNNNNGC	2 cut(s)	806, 1055
BstNI	CCWGG	1 cut(s)	720
BstNSI	RCATGY	1 cut(s)	625
BstSCI	CCNGG	2 cut(s)	718, 991
BstSFI	CTRYAG	1 cut(s)	693
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	4 cut(s)	208, 391, 784, 1067
BstV2I	GAAGAC	2 cut(s)	219, 234
BstX2I	RGATCY	1 cut(s)	309
BstXI	CCANNNNNNTGG	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	309
Bsu15I	ATCGAT	1 cut(s)	249
Bsu36I	CCTNAGG	1 cut(s)	1134
BsuRI	GGCC	2 cut(s)	380, 676
BsuTUI	ATCGAT	1 cut(s)	249
BtsCI	GGATG	4 cut(s)	44, 123, 307, 1203
BveI	ACCTGC	3 cut(s)	326, 1137, 1205
Cac8I	GCNNGC	5 cut(s)	162, 582, 888, 899, 1047
CaiI	CAGNNNCTG	1 cut(s)	725
Cfr13I	GGNCC	2 cut(s)	20, 715
ClaI	ATCGAT	1 cut(s)	249
CviAII	CATG	5 cut(s)	622, 626, 1040, 1052, 1072
DdeI	CTNAG	7 cut(s)	101, 264, 375, 408, 660, 942, 1134
DpnI	GATC	4 cut(s)	183, 311, 894, 1017
DpnII	GATC	4 cut(s)	181, 309, 892, 1015
Eam1104I	CTCTTC	2 cut(s)	242, 807
EarI	CTCTTC	2 cut(s)	242, 807
EciI	GGCGGA	1 cut(s)	531
Eco47I	GGWCC	2 cut(s)	20, 715
Eco57I	CTGAAG	3 cut(s)	281, 831, 1161
Eco81I	CCTNAGG	1 cut(s)	1134
EcoNI	CCTNNNNNAGG	1 cut(s)	1133
EcoRI	GAATTC	1 cut(s)	947
EcoRII	CCWGG	1 cut(s)	718
EcoT22I	ATGCAT	1 cut(s)	627
FaeI	CATG	5 cut(s)	625, 629, 1043, 1055, 1075
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FatI	CATG	5 cut(s)	621, 625, 1039, 1051, 1071
FauI	CCCGC	1 cut(s)	36
FauNDI	CATATG	1 cut(s)	763
Fnu4HI	GCNGC	4 cut(s)	197, 405, 798, 1056
FokI	GGATG	4 cut(s)	31, 110, 314, 1190
Fsp4HI	GCNGC	4 cut(s)	197, 405, 798, 1056
FspBI	CTAG	2 cut(s)	533, 794
GluI	GCNGC	4 cut(s)	197, 405, 798, 1056
GsaI	CCCAGC	1 cut(s)	309
HaeIII	GGCC	2 cut(s)	380, 676
HapII	CCGG	4 cut(s)	117, 279, 673, 993
Hin1II	CATG	5 cut(s)	625, 629, 1043, 1055, 1075
HincII	GTYRAC	1 cut(s)	146
HindII	GTYRAC	1 cut(s)	146
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	4 cut(s)	270, 472, 705, 839
HpaII	CCGG	4 cut(s)	117, 279, 673, 993
HphI	GGTGA	1 cut(s)	856
Hpy166II	GTNNAC	3 cut(s)	146, 421, 838
Hpy188I	TCNGA	6 cut(s)	63, 78, 376, 824, 831, 1015
Hpy188III	TCNNGA	4 cut(s)	117, 299, 731, 924
Hpy8I	GTNNAC	3 cut(s)	146, 421, 838
Hpy99I	CGWCG	2 cut(s)	206, 224
HpyAV	CCTTC	2 cut(s)	453, 1162
HpyF10VI	GCNNNNNNNGC	2 cut(s)	806, 1055
HpyF3I	CTNAG	7 cut(s)	101, 264, 375, 408, 660, 942, 1134
Hsp92II	CATG	5 cut(s)	625, 629, 1043, 1055, 1075
Kpn2I	TCCGGA	1 cut(s)	116
Kzo9I	GATC	4 cut(s)	181, 309, 892, 1015
LguI	GCTCTTC	1 cut(s)	807
LmnI	GCTCC	2 cut(s)	489, 722
Lsp1109I	GCAGC	4 cut(s)	208, 391, 784, 1067
LweI	GCATC	7 cut(s)	183, 292, 324, 436, 778, 906, 1108
MaeI	CTAG	2 cut(s)	533, 794
MaeIII	GTNAC	1 cut(s)	598
MalI	GATC	4 cut(s)	183, 311, 894, 1017
MbiI	CCGCTC	1 cut(s)	31
MboI	GATC	4 cut(s)	181, 309, 892, 1015
MboII	GAAGA	8 cut(s)	178, 191, 224, 229, 239, 358, 424, 824
MflI	RGATCY	1 cut(s)	309
MhlI	GDGCHC	1 cut(s)	1047
MluCI	AATT	6 cut(s)	38, 65, 71, 360, 684, 947
MlyI	GAGTC	1 cut(s)	833
Mph1103I	ATGCAT	1 cut(s)	627
MroI	TCCGGA	1 cut(s)	116
MseI	TTAA	2 cut(s)	363, 929
MspI	CCGG	4 cut(s)	117, 279, 673, 993
MspR9I	CCNGG	2 cut(s)	720, 993
MvaI	CCWGG	1 cut(s)	720
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	806, 1055
NciI	CCSGG	1 cut(s)	993
NdeI	CATATG	1 cut(s)	763
NdeII	GATC	4 cut(s)	181, 309, 892, 1015
NlaIII	CATG	5 cut(s)	625, 629, 1043, 1055, 1075
NlaIV	GGNNCC	2 cut(s)	491, 717
NsiI	ATGCAT	1 cut(s)	627
NspI	RCATGY	1 cut(s)	625
NspV	TTCGAA	1 cut(s)	240
PaqCI	CACCTGC	1 cut(s)	326
PciSI	GCTCTTC	1 cut(s)	807
PcsI	WCGNNNNNNNCGW	5 cut(s)	207, 228, 237, 246, 738
PfeI	GAWTC	3 cut(s)	270, 472, 705
PkrI	GCNGC	4 cut(s)	198, 406, 799, 1057
PleI	GAGTC	1 cut(s)	833
PpsI	GAGTC	1 cut(s)	833
PshBI	ATTAAT	1 cut(s)	929
Psp6I	CCWGG	1 cut(s)	718
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	718
PspN4I	GGNNCC	2 cut(s)	491, 717
PspPI	GGNCC	2 cut(s)	20, 715
PsrI	GAACNNNNNNTAC	2 cut(s)	672, 704
PstNI	CAGNNNCTG	1 cut(s)	725
PsuI	RGATCY	1 cut(s)	309
SapI	GCTCTTC	1 cut(s)	807
SaqAI	TTAA	2 cut(s)	363, 929
SatI	GCNGC	4 cut(s)	197, 405, 798, 1056
Sau3AI	GATC	4 cut(s)	181, 309, 892, 1015
Sau96I	GGNCC	2 cut(s)	20, 715
SchI	GAGTC	1 cut(s)	833
ScrFI	CCNGG	2 cut(s)	720, 993
SduI	GDGCHC	1 cut(s)	1047
SfaNI	GCATC	7 cut(s)	183, 292, 324, 436, 778, 906, 1108
SfcI	CTRYAG	1 cut(s)	693
SfuI	TTCGAA	1 cut(s)	240
SinI	GGWCC	2 cut(s)	20, 715
Sse9I	AATT	6 cut(s)	38, 65, 71, 360, 684, 947
SsiI	CCGC	2 cut(s)	29, 516
SspMI	CTAG	2 cut(s)	533, 794
StyD4I	CCNGG	2 cut(s)	718, 991
TaqI	TCGA	5 cut(s)	204, 219, 240, 249, 732
TaqII	GACCGA	1 cut(s)	552
TasI	AATT	6 cut(s)	38, 65, 71, 360, 684, 947
TfiI	GAWTC	3 cut(s)	270, 472, 705
Tru1I	TTAA	2 cut(s)	363, 929
Tru9I	TTAA	2 cut(s)	363, 929
TseI	GCWGC	4 cut(s)	196, 404, 797, 1055
TspDTI	ATGAA	5 cut(s)	17, 185, 240, 519, 997
VpaK11BI	GGWCC	2 cut(s)	20, 715
VspI	ATTAAT	1 cut(s)	929
XagI	CCTNNNNNAGG	1 cut(s)	1133
XapI	RAATTY	3 cut(s)	65, 71, 947
XceI	RCATGY	1 cut(s)	625
XspI	CTAG	2 cut(s)	533, 794
Zsp2I	ATGCAT	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.