Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004198

Physical Location & Seq

Genomic Coordinates Forward (+)

3299269 .. 3304130

Gene Structure 4862 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGATGCACACAAAGAAGAACTTGACTGGAATTAAAGGTTTATCAGAGGCCAAAGTCGATAAGATCTGTGAAGCTGCTGAGAAAATTGTGAACTTTGGATATATTACTGGAAGTGATGCTCTAATCAGAAGGAAGTCTGTGATTCGCATTACAACTGGGAGCCAAGCACTTGATGAACTATTAGGCGGTGGTATTGAAACTCTAGCCATCACAGAATCCTTTGGGGAATTCAGGTCTGGGAAAACACAGCTTGCTCACACACTCTGCGTAACAACACAGCTTCCTACTAACATGCATGGAGGGAATGGAAAGGTTGCCTACATTGATACTGAGGGAACTTTCCGGCCTGAACGAATCATACCTATAGTTGAAAGATTCGGCTTGGACCCAGGAGCTGTCCTGGACAATATCGTTTATGCTCGTGCTTTTACATATGAGCATCAGTATAATTTGCTTCTTGGTCTAGCTGCAAAAATGGCAGAAGAGCCATTTAGACTTCTGATTGTTGACTCAGTGATTGCTTTGTTTCGTGTTGATTTTACTGGGAGAGGAGAGCTTGCAGATCGCCAGCAAAAACTTGCACAGATGCTTTCCCGATTAATAAAGATCGCTGAGGAATTCAATGTTGCTGTCTATATGACCAACCAAGTGATAGCTGACCCTGGTGGTGGAGTATTCATATCTGATCCAAAGAAACCAGCAGGAGGTCATATGCTTGCCCATGCAGCAACCATAAGGCTCATGTTCAGAAAAGGCAAAGGAGAACAGCGTGTCTGCAAGGTGTTTGATGCCCCAAACCTGCCTGAGGTTGAAGCAATTTTCCAGATAACTGCAGAAGGCATTGCAGATGCGAAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000228 GO:0000280 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070192 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Rad51

Protein Analysis

287

Amino Acids

31.27

Weight (kDa)

7.02

Isoelectric Point (pI)

22.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	43 - 284	1.1e-120	Rad51
RecA_N	PF00154	44 - 252	5.2e-10	RecA N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22880 AT3G22880
fragaria_vesca	FvH4_4g03620 FvH4_4g03620 FvH4_4g03740 FvH4_4g03740 FvH4_4g03740
malus_domestica	MD16G1200300.v1.1
prunus_persica	Prupe.1G022500_v2.0.a1 Prupe.1G022500_v2.0.a1
pyrus_communis	pycom16g16950
rosa_chinensis	RchiOBHm_Chr4g0392991 RchiOBHm_Chr4g0393441 RchiOBHm_Chr4g0393481
rosa_laevigata	RLG00000009753 RLG00000009756 RLG00000009776 RLG00000010122
rosa_multiflora	Rmu_sc0008339.1_g000015 Rmu_sc0008931.1_g000008 Rmu_sc0012965.1_g000002
rosa_roxburghii	Rroxscaffold_5G00338100 Rroxscaffold_5G00338400
rosa_rugosa	Rorug03G0309300 Rorug03G0310500 Rorug04G0001200 Rorug04G0001300 Rorug04G0001700 Rorug04G0003100
rosa_samantha	Rh4CG016900
rosa_wichuraiana	Rw4G003560 Rw4G003710 Rw4G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	807
AciI	CCGC	1 cut(s)	186
AclWI	GGATC	1 cut(s)	680
AcsI	RAATTY	2 cut(s)	227, 617
AfiI	CCNNNNNNNGG	3 cut(s)	668, 704, 805
AgsI	TTSAA	4 cut(s)	197, 371, 622, 812
AjnI	CCWGG	3 cut(s)	388, 399, 661
AluBI	AGCT	7 cut(s)	74, 250, 280, 395, 467, 556, 656
AluI	AGCT	7 cut(s)	74, 250, 280, 395, 467, 556, 656
AlwI	GGATC	1 cut(s)	680
AlwNI	CAGNNNCTG	1 cut(s)	395
AoxI	GGCC	2 cut(s)	48, 344
ApeKI	GCWGC	3 cut(s)	74, 467, 725
ApoI	RAATTY	2 cut(s)	227, 617
AseI	ATTAAT	1 cut(s)	599
AspS9I	GGNCC	1 cut(s)	385
AvaII	GGWCC	1 cut(s)	385
AxyI	CCTNAGG	1 cut(s)	804
BauI	CACGAG	1 cut(s)	420
BbvCI	CCTCAGC	1 cut(s)	612
BbvI	GCAGC	3 cut(s)	61, 454, 737
BccI	CCATC	1 cut(s)	215
BciT130I	CCWGG	3 cut(s)	390, 401, 663
BfaI	CTAG	2 cut(s)	203, 464
BfmI	CTRYAG	2 cut(s)	363, 831
BfuAI	ACCTGC	1 cut(s)	807
BglII	AGATCT	1 cut(s)	63
BisI	GCNGC	3 cut(s)	75, 468, 726
BlsI	GCNGC	3 cut(s)	76, 469, 727
Bme1390I	CCNGG	3 cut(s)	390, 401, 663
Bme18I	GGWCC	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	385
BmiI	GGNNCC	2 cut(s)	161, 387
BmrFI	CCNGG	3 cut(s)	390, 401, 663
BmrI	ACTGGG	2 cut(s)	165, 552
BmsI	GCATC	5 cut(s)	106, 448, 576, 778, 838
BmuI	ACTGGG	2 cut(s)	165, 552
Bpu10I	CCTNAGC	1 cut(s)	612
BsaJI	CCNNGG	2 cut(s)	388, 661
Bsc4I	CCNNNNNNNGG	3 cut(s)	668, 704, 805
Bse1I	ACTGG	4 cut(s)	31, 112, 160, 547
Bse21I	CCTNAGG	1 cut(s)	804
Bse3DI	GCAATG	1 cut(s)	840
BseBI	CCWGG	3 cut(s)	390, 401, 663
BseDI	CCNNGG	2 cut(s)	388, 661
BseLI	CCNNNNNNNGG	3 cut(s)	668, 704, 805
BseMI	GCAATG	1 cut(s)	840
BseMII	CTCAG	5 cut(s)	69, 321, 525, 603, 795
BseNI	ACTGG	4 cut(s)	31, 112, 160, 547
BseRI	GAGGAG	1 cut(s)	564
BseXI	GCAGC	3 cut(s)	61, 454, 737
BshFI	GGCC	2 cut(s)	50, 346
BsiSI	CCGG	1 cut(s)	343
BslI	CCNNNNNNNGG	3 cut(s)	668, 704, 805
BsnI	GGCC	2 cut(s)	50, 346
Bsp143I	GATC	4 cut(s)	63, 562, 606, 685
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	2 cut(s)	50, 346
BspCNI	CTCAG	5 cut(s)	70, 322, 524, 604, 796
BspLI	GGNNCC	2 cut(s)	161, 387
BspMAI	CTGCAG	1 cut(s)	835
BspMI	ACCTGC	1 cut(s)	807
BspPI	GGATC	1 cut(s)	680
BspQI	GCTCTTC	1 cut(s)	477
BsrDI	GCAATG	1 cut(s)	840
BsrI	ACTGG	4 cut(s)	31, 112, 160, 547
BssECI	CCNNGG	2 cut(s)	388, 661
BssMI	GATC	4 cut(s)	63, 562, 606, 685
BssSI	CACGAG	1 cut(s)	420
Bst2BI	CACGAG	1 cut(s)	420
Bst2UI	CCWGG	3 cut(s)	390, 401, 663
Bst6I	CTCTTC	1 cut(s)	477
BstC8I	GCNNGC	4 cut(s)	252, 558, 569, 717
BstDEI	CTNAG	5 cut(s)	78, 330, 511, 612, 804
BstENI	CCTNNNNNAGG	1 cut(s)	803
BstKTI	GATC	4 cut(s)	66, 565, 609, 688
BstMBI	GATC	4 cut(s)	63, 562, 606, 685
BstMWI	GCNNNNNNNGC	2 cut(s)	476, 725
BstNI	CCWGG	3 cut(s)	390, 401, 663
BstNSI	RCATGY	1 cut(s)	295
BstSCI	CCNGG	3 cut(s)	388, 399, 661
BstSFI	CTRYAG	2 cut(s)	363, 831
BstV1I	GCAGC	3 cut(s)	61, 454, 737
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
Bsu36I	CCTNAGG	1 cut(s)	804
BsuRI	GGCC	2 cut(s)	50, 346
BtsIMutI	CAGTG	1 cut(s)	519
BveI	ACCTGC	1 cut(s)	807
Cac8I	GCNNGC	4 cut(s)	252, 558, 569, 717
CaiI	CAGNNNCTG	1 cut(s)	395
Cfr13I	GGNCC	1 cut(s)	385
CviAII	CATG	4 cut(s)	292, 296, 722, 742
DdeI	CTNAG	5 cut(s)	78, 330, 511, 612, 804
DpnI	GATC	4 cut(s)	65, 564, 608, 687
DpnII	GATC	4 cut(s)	63, 562, 606, 685
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Eco47I	GGWCC	1 cut(s)	385
Eco81I	CCTNAGG	1 cut(s)	804
EcoNI	CCTNNNNNAGG	1 cut(s)	803
EcoRI	GAATTC	2 cut(s)	227, 617
EcoRII	CCWGG	3 cut(s)	388, 399, 661
EcoT22I	ATGCAT	1 cut(s)	297
FaeI	CATG	4 cut(s)	295, 299, 725, 745
FalI	AAGNNNNNCTT	1 cut(s)	37
FatI	CATG	4 cut(s)	291, 295, 721, 741
FauNDI	CATATG	2 cut(s)	433, 711
Fnu4HI	GCNGC	3 cut(s)	75, 468, 726
Fsp4HI	GCNGC	3 cut(s)	75, 468, 726
FspBI	CTAG	2 cut(s)	203, 464
GluI	GCNGC	3 cut(s)	75, 468, 726
HaeIII	GGCC	2 cut(s)	50, 346
HapII	CCGG	1 cut(s)	343
Hin1II	CATG	4 cut(s)	295, 299, 725, 745
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HinfI	GANTC	5 cut(s)	142, 215, 354, 375, 509
HpaII	CCGG	1 cut(s)	343
Hpy166II	GTNNAC	2 cut(s)	91, 508
Hpy188I	TCNGA	5 cut(s)	46, 128, 501, 685, 749
Hpy188III	TCNNGA	2 cut(s)	594, 823
Hpy8I	GTNNAC	2 cut(s)	91, 508
HpyAV	CCTTC	3 cut(s)	123, 830, 847
HpyCH4V	TGCA	9 cut(s)	7, 295, 470, 560, 581, 725, 777, 833, 845
HpyF10VI	GCNNNNNNNGC	2 cut(s)	476, 725
HpyF3I	CTNAG	5 cut(s)	78, 330, 511, 612, 804
Hsp92II	CATG	4 cut(s)	295, 299, 725, 745
Kzo9I	GATC	4 cut(s)	63, 562, 606, 685
LguI	GCTCTTC	1 cut(s)	477
LmnI	GCTCC	2 cut(s)	159, 392
Lsp1109I	GCAGC	3 cut(s)	61, 454, 737
LweI	GCATC	5 cut(s)	106, 448, 576, 778, 838
MaeI	CTAG	2 cut(s)	203, 464
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	4 cut(s)	65, 564, 608, 687
MboI	GATC	4 cut(s)	63, 562, 606, 685
MboII	GAAGA	2 cut(s)	28, 494
MflI	RGATCY	1 cut(s)	63
MluCI	AATT	6 cut(s)	30, 84, 227, 448, 617, 816
MlyI	GAGTC	1 cut(s)	503
MnlI	CCTC	7 cut(s)	40, 293, 325, 542, 607, 698, 799
Mph1103I	ATGCAT	1 cut(s)	297
MseI	TTAA	2 cut(s)	33, 599
MspI	CCGG	1 cut(s)	343
MspR9I	CCNGG	3 cut(s)	390, 401, 663
MvaI	CCWGG	3 cut(s)	390, 401, 663
MwoI	GCNNNNNNNGC	2 cut(s)	476, 725
NdeI	CATATG	2 cut(s)	433, 711
NdeII	GATC	4 cut(s)	63, 562, 606, 685
NlaIII	CATG	4 cut(s)	295, 299, 725, 745
NlaIV	GGNNCC	2 cut(s)	161, 387
NsiI	ATGCAT	1 cut(s)	297
NspI	RCATGY	1 cut(s)	295
PciSI	GCTCTTC	1 cut(s)	477
PfeI	GAWTC	4 cut(s)	142, 215, 354, 375
PfoI	TCCNGGA	1 cut(s)	399
PkrI	GCNGC	3 cut(s)	76, 469, 727
PleI	GAGTC	1 cut(s)	503
PpsI	GAGTC	1 cut(s)	503
PshBI	ATTAAT	1 cut(s)	599
Psp6I	CCWGG	3 cut(s)	388, 399, 661
PspGI	CCWGG	3 cut(s)	388, 399, 661
PspN4I	GGNNCC	2 cut(s)	161, 387
PspPI	GGNCC	1 cut(s)	385
PsrI	GAACNNNNNNTAC	2 cut(s)	342, 374
PstI	CTGCAG	1 cut(s)	835
PstNI	CAGNNNCTG	1 cut(s)	395
PsuI	RGATCY	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	477
SaqAI	TTAA	2 cut(s)	33, 599
SatI	GCNGC	3 cut(s)	75, 468, 726
Sau3AI	GATC	4 cut(s)	63, 562, 606, 685
Sau96I	GGNCC	1 cut(s)	385
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	3 cut(s)	390, 401, 663
SfaNI	GCATC	5 cut(s)	106, 448, 576, 778, 838
SfcI	CTRYAG	2 cut(s)	363, 831
SinI	GGWCC	1 cut(s)	385
Sse9I	AATT	6 cut(s)	30, 84, 227, 448, 617, 816
SsiI	CCGC	1 cut(s)	186
SspMI	CTAG	2 cut(s)	203, 464
StyD4I	CCNGG	3 cut(s)	388, 399, 661
TaqI	TCGA	1 cut(s)	57
TasI	AATT	6 cut(s)	30, 84, 227, 448, 617, 816
TfiI	GAWTC	4 cut(s)	142, 215, 354, 375
Tru1I	TTAA	2 cut(s)	33, 599
Tru9I	TTAA	2 cut(s)	33, 599
TscAI	CASTG	1 cut(s)	519
TseI	GCWGC	3 cut(s)	74, 467, 725
TspDTI	ATGAA	2 cut(s)	189, 667
TspRI	CASTG	1 cut(s)	519
VpaK11BI	GGWCC	1 cut(s)	385
VspI	ATTAAT	1 cut(s)	599
XagI	CCTNNNNNAGG	1 cut(s)	803
XapI	RAATTY	2 cut(s)	227, 617
XceI	RCATGY	1 cut(s)	295
XspI	CTAG	2 cut(s)	203, 464
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.