Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004198

Physical Location & Seq

Genomic Coordinates Reverse (-)

8918769 .. 8921354

Gene Structure 2586 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36604

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTTCCTTAACTTTGGATATATAACTGGAAGTGATACTCTAACCAGAAGGGAGTCTGTGATTCGCATTACAACTGGGAGCCAAGCACTTGATGAACTATTAGGCGGTGGGATTGAAACTCTTGCAGTCACAGAAGCCTTTGGGGAATTTAGGTCTGGGAAAACACAGCTTGCACACACACTCTGCGTAACTACACAGATCTCTTATGCTCGTGCTTTTACATATGAGCATCAGTATAATCTGCTTCTTGGTCTAGCTGCAAAAATGGCTGAAGAGACATTCAGACTTCTGATTGTGGACTCGGTGATCGCTGTATTTCATGTTGATTTTACCGGGAGAGGAGAGCTTGCAGATCGCCAGCAAAAACTCGCACAGATGCTTTCCCGATTGATAAAGATTGCTGAGGAATTCAATGTCGCTGTCTATATGACCAACCAAGTGATGGCTGACCCCGGTGGTGGAGTGTTGTTATCTGATCCAAAGAAAACAGCAGGAGGTCATGTGCTTGCCCATGCAGCAACCATAAGGCTCATGTTTAGAAAAGGCAAAGGAGAACAGCGTGTCTGCAAGGTGTTTGATGCCCCGAACCTGCCTGAGGCTGAAGCAATATCCTTCTCATTTGCTTTATTGATATACTTTATGACTTTTATCGTTACGTGCATCATCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000228 GO:0000280 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070192 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Rad51

Protein Analysis

223

Amino Acids

24.55

Weight (kDa)

6.52

Isoelectric Point (pI)

21.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	16 - 68	9e-22	Rad51
Rad51	PF08423	66 - 203	4.7e-60	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22880 AT3G22880
fragaria_vesca	FvH4_4g03620 FvH4_4g03620 FvH4_4g03740 FvH4_4g03740 FvH4_4g03740
malus_domestica	MD16G1200300.v1.1
prunus_persica	Prupe.1G022500_v2.0.a1 Prupe.1G022500_v2.0.a1
pyrus_communis	pycom16g16950
rosa_chinensis	RchiOBHm_Chr4g0392991 RchiOBHm_Chr4g0393441 RchiOBHm_Chr4g0393481
rosa_laevigata	RLG00000009753 RLG00000009756 RLG00000009776 RLG00000010122
rosa_multiflora	Rmu_sc0008339.1_g000015 Rmu_sc0008931.1_g000008 Rmu_sc0012965.1_g000002
rosa_roxburghii	Rroxscaffold_5G00338100 Rroxscaffold_5G00338400
rosa_rugosa	Rorug03G0309300 Rorug03G0310500 Rorug04G0001200 Rorug04G0001300 Rorug04G0001700 Rorug04G0003100
rosa_samantha	Rh4CG016900
rosa_wichuraiana	Rw4G003560 Rw4G003710 Rw4G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	597
AccB7I	CCANNNNNTGG	1 cut(s)	442
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	1 cut(s)	470
AcsI	RAATTY	2 cut(s)	146, 407
AcuI	CTGAAG	2 cut(s)	291, 621
AfiI	CCNNNNNNNGG	3 cut(s)	442, 458, 595
AgsI	TTSAA	2 cut(s)	116, 412
AluBI	AGCT	3 cut(s)	169, 257, 346
AluI	AGCT	3 cut(s)	169, 257, 346
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	1 cut(s)	470
ApeKI	GCWGC	2 cut(s)	257, 515
ApoI	RAATTY	2 cut(s)	146, 407
AsuC2I	CCSGG	2 cut(s)	334, 453
AsuHPI	GGTGA	1 cut(s)	316
AxyI	CCTNAGG	1 cut(s)	594
BauI	CACGAG	1 cut(s)	210
BbvCI	CCTCAGC	1 cut(s)	402
BbvI	GCAGC	2 cut(s)	244, 527
BccI	CCATC	1 cut(s)	436
BcnI	CCSGG	2 cut(s)	334, 453
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	254
BfuAI	ACCTGC	1 cut(s)	597
BglII	AGATCT	1 cut(s)	198
BisI	GCNGC	2 cut(s)	258, 516
BlsI	GCNGC	2 cut(s)	259, 517
Bme1390I	CCNGG	2 cut(s)	334, 453
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	2 cut(s)	334, 453
BmrI	ACTGGG	1 cut(s)	84
BmsI	GCATC	3 cut(s)	238, 366, 568
BmuI	ACTGGG	1 cut(s)	84
Bpu10I	CCTNAGC	1 cut(s)	402
BpuMI	CCSGG	2 cut(s)	334, 453
BsaAI	YACGTR	1 cut(s)	657
BsaJI	CCNNGG	1 cut(s)	451
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bsc4I	CCNNNNNNNGG	3 cut(s)	442, 458, 595
Bse1I	ACTGG	2 cut(s)	31, 79
Bse21I	CCTNAGG	1 cut(s)	594
BseDI	CCNNGG	1 cut(s)	451
BseGI	GGATG	1 cut(s)	663
BseLI	CCNNNNNNNGG	3 cut(s)	442, 458, 595
BseMII	CTCAG	2 cut(s)	393, 585
BseNI	ACTGG	2 cut(s)	31, 79
BseRI	GAGGAG	1 cut(s)	354
BseXI	GCAGC	2 cut(s)	244, 527
BsiSI	CCGG	2 cut(s)	333, 453
BslI	CCNNNNNNNGG	3 cut(s)	442, 458, 595
BsmAI	GTCTC	1 cut(s)	269
Bsp143I	GATC	4 cut(s)	198, 306, 352, 475
BspACI	CCGC	1 cut(s)	105
BspCNI	CTCAG	2 cut(s)	394, 586
BspLI	GGNNCC	1 cut(s)	80
BspMI	ACCTGC	1 cut(s)	597
BspPI	GGATC	1 cut(s)	470
BsrI	ACTGG	2 cut(s)	31, 79
BssECI	CCNNGG	1 cut(s)	451
BssMI	GATC	4 cut(s)	198, 306, 352, 475
BssSI	CACGAG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	210
Bst6I	CTCTTC	1 cut(s)	267
BstBAI	YACGTR	1 cut(s)	657
BstC8I	GCNNGC	4 cut(s)	171, 348, 359, 507
BstDEI	CTNAG	2 cut(s)	402, 594
BstENI	CCTNNNNNAGG	1 cut(s)	593
BstF5I	GGATG	1 cut(s)	663
BstKTI	GATC	4 cut(s)	201, 309, 355, 478
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	4 cut(s)	198, 306, 352, 475
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 515
BstSCI	CCNGG	2 cut(s)	332, 451
BstV1I	GCAGC	2 cut(s)	244, 527
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
Bsu36I	CCTNAGG	1 cut(s)	594
BtsCI	GGATG	1 cut(s)	663
BveI	ACCTGC	1 cut(s)	597
Cac8I	GCNNGC	4 cut(s)	171, 348, 359, 507
CviAII	CATG	4 cut(s)	320, 500, 512, 532
CviJI	RGCY	9 cut(s)	81, 137, 169, 257, 269, 346, 446, 529, 599
CviKI_1	RGCY	9 cut(s)	81, 137, 169, 257, 269, 346, 446, 529, 599
DdeI	CTNAG	2 cut(s)	402, 594
DpnI	GATC	4 cut(s)	200, 308, 354, 477
DpnII	GATC	4 cut(s)	198, 306, 352, 475
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco57I	CTGAAG	2 cut(s)	291, 621
Eco81I	CCTNAGG	1 cut(s)	594
EcoNI	CCTNNNNNAGG	1 cut(s)	593
EcoRI	GAATTC	1 cut(s)	407
FaeI	CATG	4 cut(s)	323, 503, 515, 535
FatI	CATG	4 cut(s)	319, 499, 511, 531
FauNDI	CATATG	1 cut(s)	223
Fnu4HI	GCNGC	2 cut(s)	258, 516
FokI	GGATG	1 cut(s)	650
Fsp4HI	GCNGC	2 cut(s)	258, 516
FspBI	CTAG	1 cut(s)	254
GluI	GCNGC	2 cut(s)	258, 516
HapII	CCGG	2 cut(s)	333, 453
Hin1II	CATG	4 cut(s)	323, 503, 515, 535
HinfI	GANTC	3 cut(s)	53, 61, 299
HpaII	CCGG	2 cut(s)	333, 453
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	3 cut(s)	284, 291, 475
Hpy188III	TCNNGA	1 cut(s)	384
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	2 cut(s)	42, 622
HpyCH4IV	ACGT	1 cut(s)	656
HpyCH4V	TGCA	7 cut(s)	125, 173, 260, 350, 515, 567, 660
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 515
HpyF3I	CTNAG	2 cut(s)	402, 594
HpySE526I	ACGT	1 cut(s)	656
Hsp92II	CATG	4 cut(s)	323, 503, 515, 535
Kzo9I	GATC	4 cut(s)	198, 306, 352, 475
LmnI	GCTCC	1 cut(s)	78
Lsp1109I	GCAGC	2 cut(s)	244, 527
LweI	GCATC	3 cut(s)	238, 366, 568
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	1 cut(s)	656
MaeIII	GTNAC	3 cut(s)	127, 187, 652
MalI	GATC	4 cut(s)	200, 308, 354, 477
MboI	GATC	4 cut(s)	198, 306, 352, 475
MboII	GAAGA	1 cut(s)	284
MflI	RGATCY	1 cut(s)	198
MluCI	AATT	2 cut(s)	146, 407
MlyI	GAGTC	2 cut(s)	62, 293
MnlI	CCTC	4 cut(s)	332, 397, 488, 589
MseI	TTAA	1 cut(s)	9
MspI	CCGG	2 cut(s)	333, 453
MspR9I	CCNGG	2 cut(s)	334, 453
MwoI	GCNNNNNNNGC	2 cut(s)	266, 515
NciI	CCSGG	2 cut(s)	334, 453
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	4 cut(s)	198, 306, 352, 475
NlaIII	CATG	4 cut(s)	323, 503, 515, 535
NlaIV	GGNNCC	1 cut(s)	80
NmuCI	GTSAC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	61
PflMI	CCANNNNNTGG	1 cut(s)	442
PkrI	GCNGC	2 cut(s)	259, 517
PleI	GAGTC	2 cut(s)	61, 293
PpsI	GAGTC	2 cut(s)	61, 293
Ppu21I	YACGTR	1 cut(s)	657
PspN4I	GGNNCC	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	2 cut(s)	258, 516
Sau3AI	GATC	4 cut(s)	198, 306, 352, 475
SchI	GAGTC	2 cut(s)	62, 293
ScrFI	CCNGG	2 cut(s)	334, 453
SetI	ASST	8 cut(s)	155, 171, 259, 348, 499, 573, 591, 659
SfaNI	GCATC	3 cut(s)	238, 366, 568
Sse9I	AATT	2 cut(s)	146, 407
SsiI	CCGC	1 cut(s)	105
SspMI	CTAG	1 cut(s)	254
StyD4I	CCNGG	2 cut(s)	332, 451
TaiI	ACGT	1 cut(s)	659
TasI	AATT	2 cut(s)	146, 407
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	2 cut(s)	257, 515
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	108, 308
Van91I	CCANNNNNTGG	1 cut(s)	442
XagI	CCTNNNNNAGG	1 cut(s)	593
XapI	RAATTY	2 cut(s)	146, 407
XcmI	CCANNNNNNNNNTGG	1 cut(s)	439
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.