Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0004198

Physical Location & Seq

Genomic Coordinates Forward (+)

7270957 .. 7275328

Gene Structure 4372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G003740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGAAGAGTCTGTTTCTAGCCGAAGATCAAAGCCAGATGCAGCTCGTCGAACGCGAAGACATCGACGATGAAGACGACCTCTTCGAAGCCATCGATAAGCTGATTGCTCAGGGAATCAATGCCGGAGATGTTAAGAAGCTTCAGGATGCTGGGATCTACACCTGCAATGGTTTGATGATGCACACCAAGAAGAACTTGACTGGAATTAAAGGCTTATCTGAGGCCAAAGTTGATAAGATTTGTGAAGCTGCTGAGAAGATAGTGAACTTTGGATATATAACTGGAAGTGATGCTCTAACCAGAAGGAAGTCTGTGATTCGCATTACAACTGGGAGCCAAGCACTTGATGAACTATTAGGCGGAGGGGTTGAAACTCTAGCAATCACAGAAGCCTTTGGGGAATTTCGGTCTGGGAAAACACAGCTTGCACACACACTCTGCGTAACTACACAGCTTCCTACTAACATGCATGGAGGGAATGGAAAGGTTGCTTACATTGATACTGAGGGAACATTCCGGCCTGAACGAATTATACCTATAGCTGAAAGATTTGGCTTGGACCCAGGAGCTGTTCTCGACAATATCGTTTATGCTCGTGCTTTTACATATGAGCATCAGTATAATCTGCTTCTTGGTCTAGCTGCAAAAATGGCTGAAGAGCCATTCAGACTTCTGATTGTGGACTCAGTGATTGCTCTATTTCGTGTTGATTTTACTGGGAGAGGAGAGCTTGCAGATCGCCAGCAAAAACTTGCACAGATGCTTTCCCGATTAATAAAGATTGCTGAGGAATTCAATGTCGCTGTCTATATGACCAACCAAGTGATAGCTGACCCCGGTGGTGGAGTGTTCATATCTGATCCAAAGAAACCAGCAGGAGGTCATGTGCTCGCCCATGCAGCAACCATAAGGCTCATGTTTAGAAAAGGCAAAGGGGAACAGCGTGTCTGCAAGGTGTTTGATGCCCCAAACCTGCCTGAGGCTGAAGCAGTTTTCCAGATAACTGCAGGAGGCATTGCAGATGCAAAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000228 GO:0000280 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070192 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Rad51

Protein Analysis

344

Amino Acids

37.51

Weight (kDa)

5.43

Isoelectric Point (pI)

21.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	101 - 342	8.5e-122	Rad51
RecA_N	PF00154	102 - 310	1.3e-10	RecA N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22880 AT3G22880
fragaria_vesca	FvH4_4g03620 FvH4_4g03620 FvH4_4g03740 FvH4_4g03740 FvH4_4g03740
malus_domestica	MD16G1200300.v1.1
prunus_persica	Prupe.1G022500_v2.0.a1 Prupe.1G022500_v2.0.a1
pyrus_communis	pycom16g16950
rosa_chinensis	RchiOBHm_Chr4g0392991 RchiOBHm_Chr4g0393441 RchiOBHm_Chr4g0393481
rosa_laevigata	RLG00000009753 RLG00000009756 RLG00000009776 RLG00000010122
rosa_multiflora	Rmu_sc0008339.1_g000015 Rmu_sc0008931.1_g000008 Rmu_sc0012965.1_g000002
rosa_roxburghii	Rroxscaffold_5G00338100 Rroxscaffold_5G00338400
rosa_rugosa	Rorug03G0309300 Rorug03G0310500 Rorug04G0001200 Rorug04G0001300 Rorug04G0001700 Rorug04G0003100
rosa_samantha	Rh4CG016900
rosa_wichuraiana	Rw4G003560 Rw4G003710 Rw4G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	170
Acc36I	ACCTGC	2 cut(s)	170, 981
AccII	CGCG	1 cut(s)	54
AciI	CCGC	1 cut(s)	360
AclWI	GGATC	2 cut(s)	161, 854
AcsI	RAATTY	2 cut(s)	401, 791
AcuI	CTGAAG	3 cut(s)	125, 675, 1005
AfiI	CCNNNNNNNGG	3 cut(s)	842, 878, 979
AgsI	TTSAA	2 cut(s)	371, 796
AjnI	CCWGG	1 cut(s)	562
Alw21I	GWGCWC	1 cut(s)	891
AlwI	GGATC	2 cut(s)	161, 854
AlwNI	CAGNNNCTG	1 cut(s)	569
AoxI	GGCC	2 cut(s)	222, 518
ApeKI	GCWGC	4 cut(s)	40, 248, 641, 899
ApoI	RAATTY	2 cut(s)	401, 791
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AseI	ATTAAT	1 cut(s)	773
AspS9I	GGNCC	1 cut(s)	559
AsuC2I	CCSGG	1 cut(s)	837
AsuII	TTCGAA	1 cut(s)	84
AvaII	GGWCC	1 cut(s)	559
AxyI	CCTNAGG	1 cut(s)	978
BauI	CACGAG	1 cut(s)	594
BbsI	GAAGAC	2 cut(s)	63, 78
Bbv12I	GWGCWC	1 cut(s)	891
BbvCI	CCTCAGC	1 cut(s)	786
BbvI	GCAGC	4 cut(s)	52, 235, 628, 911
BccI	CCATC	1 cut(s)	98
BciT130I	CCWGG	1 cut(s)	564
BcnI	CCSGG	1 cut(s)	837
BfaI	CTAG	3 cut(s)	17, 377, 638
BfmI	CTRYAG	2 cut(s)	537, 1005
BfuAI	ACCTGC	2 cut(s)	170, 981
BisI	GCNGC	4 cut(s)	41, 249, 642, 900
BlsI	GCNGC	4 cut(s)	42, 250, 643, 901
Bme1390I	CCNGG	2 cut(s)	564, 837
Bme18I	GGWCC	1 cut(s)	559
BmgT120I	GGNCC	1 cut(s)	559
BmiI	GGNNCC	2 cut(s)	335, 561
BmrFI	CCNGG	2 cut(s)	564, 837
BmrI	ACTGGG	2 cut(s)	339, 726
BmsI	GCATC	8 cut(s)	27, 136, 168, 280, 622, 750, 952, 1012
BmuI	ACTGGG	2 cut(s)	339, 726
BpiI	GAAGAC	2 cut(s)	63, 78
BplI	GAGNNNNNCTC	2 cut(s)	558, 590
Bpu10I	CCTNAGC	2 cut(s)	108, 786
Bpu14I	TTCGAA	1 cut(s)	84
BpuMI	CCSGG	1 cut(s)	837
Bsa29I	ATCGAT	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	562, 835
BsaXI	ACNNNNNCTCC	2 cut(s)	870, 900
Bsc4I	CCNNNNNNNGG	3 cut(s)	842, 878, 979
Bse1I	ACTGG	4 cut(s)	205, 286, 334, 721
Bse21I	CCTNAGG	1 cut(s)	978
Bse3DI	GCAATG	2 cut(s)	172, 1014
BseBI	CCWGG	1 cut(s)	564
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	2 cut(s)	562, 835
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	3 cut(s)	842, 878, 979
BseMI	GCAATG	2 cut(s)	172, 1014
BseMII	CTCAG	7 cut(s)	122, 210, 243, 495, 699, 777, 969
BseNI	ACTGG	4 cut(s)	205, 286, 334, 721
BseRI	GAGGAG	1 cut(s)	738
BseXI	GCAGC	4 cut(s)	52, 235, 628, 911
BseYI	CCCAGC	1 cut(s)	149
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	2 cut(s)	224, 520
BshVI	ATCGAT	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	891
BsiSI	CCGG	3 cut(s)	123, 517, 837
BslI	CCNNNNNNNGG	3 cut(s)	842, 878, 979
BsnI	GGCC	2 cut(s)	224, 520
Bsp119I	TTCGAA	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	891
Bsp143I	GATC	4 cut(s)	25, 153, 736, 859
BspACI	CCGC	1 cut(s)	360
BspANI	GGCC	2 cut(s)	224, 520
BspCNI	CTCAG	7 cut(s)	121, 211, 244, 496, 698, 778, 970
BspDI	ATCGAT	1 cut(s)	93
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	2 cut(s)	335, 561
BspMAI	CTGCAG	1 cut(s)	1009
BspMI	ACCTGC	2 cut(s)	170, 981
BspPI	GGATC	2 cut(s)	161, 854
BspQI	GCTCTTC	1 cut(s)	651
BspT104I	TTCGAA	1 cut(s)	84
BsrDI	GCAATG	2 cut(s)	172, 1014
BsrI	ACTGG	4 cut(s)	205, 286, 334, 721
BssECI	CCNNGG	2 cut(s)	562, 835
BssMI	GATC	4 cut(s)	25, 153, 736, 859
BssSI	CACGAG	1 cut(s)	594
Bst2BI	CACGAG	1 cut(s)	594
Bst2UI	CCWGG	1 cut(s)	564
Bst6I	CTCTTC	2 cut(s)	86, 651
BstBI	TTCGAA	1 cut(s)	84
BstC8I	GCNNGC	4 cut(s)	426, 732, 743, 891
BstDEI	CTNAG	7 cut(s)	108, 219, 252, 504, 685, 786, 978
BstENI	CCTNNNNNAGG	1 cut(s)	977
BstF5I	GGATG	1 cut(s)	151
BstFNI	CGCG	1 cut(s)	54
BstKTI	GATC	4 cut(s)	28, 156, 739, 862
BstMBI	GATC	4 cut(s)	25, 153, 736, 859
BstMWI	GCNNNNNNNGC	2 cut(s)	650, 899
BstNI	CCWGG	1 cut(s)	564
BstNSI	RCATGY	1 cut(s)	469
BstSCI	CCNGG	2 cut(s)	562, 835
BstSFI	CTRYAG	2 cut(s)	537, 1005
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	4 cut(s)	52, 235, 628, 911
BstV2I	GAAGAC	2 cut(s)	63, 78
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
Bsu15I	ATCGAT	1 cut(s)	93
Bsu36I	CCTNAGG	1 cut(s)	978
BsuRI	GGCC	2 cut(s)	224, 520
BsuTUI	ATCGAT	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	693
BveI	ACCTGC	2 cut(s)	170, 981
Cac8I	GCNNGC	4 cut(s)	426, 732, 743, 891
CaiI	CAGNNNCTG	1 cut(s)	569
Cfr13I	GGNCC	1 cut(s)	559
ClaI	ATCGAT	1 cut(s)	93
CviAII	CATG	5 cut(s)	466, 470, 884, 896, 916
DdeI	CTNAG	7 cut(s)	108, 219, 252, 504, 685, 786, 978
DpnI	GATC	4 cut(s)	27, 155, 738, 861
DpnII	GATC	4 cut(s)	25, 153, 736, 859
Eam1104I	CTCTTC	2 cut(s)	86, 651
EarI	CTCTTC	2 cut(s)	86, 651
EciI	GGCGGA	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	559
Eco57I	CTGAAG	3 cut(s)	125, 675, 1005
Eco81I	CCTNAGG	1 cut(s)	978
EcoNI	CCTNNNNNAGG	1 cut(s)	977
EcoRI	GAATTC	1 cut(s)	791
EcoRII	CCWGG	1 cut(s)	562
EcoT22I	ATGCAT	1 cut(s)	471
FaeI	CATG	5 cut(s)	469, 473, 887, 899, 919
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FatI	CATG	5 cut(s)	465, 469, 883, 895, 915
FauNDI	CATATG	1 cut(s)	607
Fnu4HI	GCNGC	4 cut(s)	41, 249, 642, 900
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	4 cut(s)	41, 249, 642, 900
FspBI	CTAG	3 cut(s)	17, 377, 638
GluI	GCNGC	4 cut(s)	41, 249, 642, 900
GsaI	CCCAGC	1 cut(s)	153
HaeIII	GGCC	2 cut(s)	224, 520
HapII	CCGG	3 cut(s)	123, 517, 837
Hin1II	CATG	5 cut(s)	469, 473, 887, 899, 919
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	4 cut(s)	7, 114, 316, 683
HpaII	CCGG	3 cut(s)	123, 517, 837
Hpy166II	GTNNAC	2 cut(s)	265, 682
Hpy188I	TCNGA	4 cut(s)	220, 668, 675, 859
Hpy188III	TCNNGA	4 cut(s)	143, 575, 768, 997
Hpy8I	GTNNAC	2 cut(s)	265, 682
Hpy99I	CGWCG	2 cut(s)	50, 68
HpyAV	CCTTC	1 cut(s)	297
HpyF10VI	GCNNNNNNNGC	2 cut(s)	650, 899
HpyF3I	CTNAG	7 cut(s)	108, 219, 252, 504, 685, 786, 978
Hsp92II	CATG	5 cut(s)	469, 473, 887, 899, 919
Kzo9I	GATC	4 cut(s)	25, 153, 736, 859
LguI	GCTCTTC	1 cut(s)	651
LmnI	GCTCC	2 cut(s)	333, 566
Lsp1109I	GCAGC	4 cut(s)	52, 235, 628, 911
LweI	GCATC	8 cut(s)	27, 136, 168, 280, 622, 750, 952, 1012
MaeI	CTAG	3 cut(s)	17, 377, 638
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	4 cut(s)	27, 155, 738, 861
MboI	GATC	4 cut(s)	25, 153, 736, 859
MboII	GAAGA	8 cut(s)	16, 35, 68, 73, 83, 202, 268, 668
MflI	RGATCY	1 cut(s)	153
MhlI	GDGCHC	1 cut(s)	891
MluCI	AATT	4 cut(s)	204, 401, 528, 791
MlyI	GAGTC	2 cut(s)	16, 677
Mph1103I	ATGCAT	1 cut(s)	471
MseI	TTAA	3 cut(s)	132, 207, 773
MspI	CCGG	3 cut(s)	123, 517, 837
MspR9I	CCNGG	2 cut(s)	564, 837
MvaI	CCWGG	1 cut(s)	564
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	2 cut(s)	650, 899
NciI	CCSGG	1 cut(s)	837
NdeI	CATATG	1 cut(s)	607
NdeII	GATC	4 cut(s)	25, 153, 736, 859
NlaIII	CATG	5 cut(s)	469, 473, 887, 899, 919
NlaIV	GGNNCC	2 cut(s)	335, 561
NsiI	ATGCAT	1 cut(s)	471
NspI	RCATGY	1 cut(s)	469
NspV	TTCGAA	1 cut(s)	84
PaqCI	CACCTGC	1 cut(s)	170
PciSI	GCTCTTC	1 cut(s)	651
PcsI	WCGNNNNNNNCGW	5 cut(s)	51, 72, 81, 90, 582
PfeI	GAWTC	2 cut(s)	114, 316
PkrI	GCNGC	4 cut(s)	42, 250, 643, 901
PleI	GAGTC	2 cut(s)	15, 677
PpsI	GAGTC	2 cut(s)	15, 677
PshBI	ATTAAT	1 cut(s)	773
Psp6I	CCWGG	1 cut(s)	562
PspFI	CCCAGC	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	562
PspN4I	GGNNCC	2 cut(s)	335, 561
PspPI	GGNCC	1 cut(s)	559
PsrI	GAACNNNNNNTAC	2 cut(s)	516, 548
PstI	CTGCAG	1 cut(s)	1009
PstNI	CAGNNNCTG	1 cut(s)	569
PsuI	RGATCY	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	651
SaqAI	TTAA	3 cut(s)	132, 207, 773
SatI	GCNGC	4 cut(s)	41, 249, 642, 900
Sau3AI	GATC	4 cut(s)	25, 153, 736, 859
Sau96I	GGNCC	1 cut(s)	559
SchI	GAGTC	2 cut(s)	16, 677
ScrFI	CCNGG	2 cut(s)	564, 837
SduI	GDGCHC	1 cut(s)	891
SfaNI	GCATC	8 cut(s)	27, 136, 168, 280, 622, 750, 952, 1012
SfcI	CTRYAG	2 cut(s)	537, 1005
SfuI	TTCGAA	1 cut(s)	84
SinI	GGWCC	1 cut(s)	559
Sse9I	AATT	4 cut(s)	204, 401, 528, 791
SsiI	CCGC	1 cut(s)	360
SspMI	CTAG	3 cut(s)	17, 377, 638
StyD4I	CCNGG	2 cut(s)	562, 835
TaqI	TCGA	5 cut(s)	48, 63, 84, 93, 576
TaqII	GACCGA	1 cut(s)	396
TasI	AATT	4 cut(s)	204, 401, 528, 791
TfiI	GAWTC	2 cut(s)	114, 316
Tru1I	TTAA	3 cut(s)	132, 207, 773
Tru9I	TTAA	3 cut(s)	132, 207, 773
TscAI	CASTG	1 cut(s)	693
TseI	GCWGC	4 cut(s)	40, 248, 641, 899
TspDTI	ATGAA	4 cut(s)	17, 84, 363, 841
TspRI	CASTG	1 cut(s)	693
VpaK11BI	GGWCC	1 cut(s)	559
VspI	ATTAAT	1 cut(s)	773
XagI	CCTNNNNNAGG	1 cut(s)	977
XapI	RAATTY	2 cut(s)	401, 791
XceI	RCATGY	1 cut(s)	469
XspI	CTAG	3 cut(s)	17, 377, 638
Zsp2I	ATGCAT	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.