Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004198

Physical Location & Seq

Genomic Coordinates Reverse (-)

625947 .. 629974

Gene Structure 4028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0003100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2226 bp

ATGTCTAACTTTGGTCAAGTTGTTTCTGCAGGGATCCAGAACGTCAATGATGCAGGTCTAAATGTGGTCACTATAGGCCAAATTCAGTTGCTTAATGGATGGAATTATAAGAAATGGAGAAACCAAGTTGAATTTTATCTGTCTATGCATCAAAACATGGATCTTTGCTTGATTGAGGAACAGCCATTAGAGCTAGACACTGAGAGCACAGAAGAAGATAGAAAATATTTTAAGGAGTGGCATAGCGCCAACAGGAAAGCCAAAAATGTGATAAGAACCTCTATGTCTGACACAGTTAGGGGCTCGATCATTGAGCCAGAGCTTGCCATGGATTTCCTAGAAGCCATAGGAGATAAGTATCAGGAGAGTGACAAAGTTGAGGCTGCTAGGCTATCCAAAATATTTAATGAGCTGGAATTTACAGGAAAAGGAAGTGTGAGGGAGCACATTATGGAGCTGATTGACCTCAACTCGAGGCTGAGGGATTTAGACATGGGAGTTAAAGACTCTCAGGTTGTGCATGTGGCACTTCAGTCATTGCCTAACACCTACAGTAACCTGAGAACCTCCTACCATGCCCAAGAGTCTAACTGGGACTTGAACAAGTTAATTTCTATATGTGTAGTAGAGGAAGAGAGGATCAGAAAAGAAGGCAGACCAGCTACTGCAGTAAACCTAGTTGAGAAGCCTAAATGGAAGAAAAGGAACCAACTTAAGGCCAAGAAGACTACCACCACTAAAGTACCTGGCAAACCTACAGAACATAAAGCTGAGAAACCTTTTAAGTTTAAGTGCTATTTTTGCAAGAAAATAGGGCACATGAAGAGAGATTGCAGTGGTTTCAAGGCTTGGATGATAAAGAAGGGTGAGTCTTTTCCAAATTCTGTCTTTTCTCTAGAAGTTAATTTTGTTAATATAGCATCTCACTCTTACTGGTTAGACTCAGGCTCACCTATACACATTACAAATTCCTTGCAGGGTTTAACAAACAGGAGGACACCAAAGAATAGTGAGGTTCAAGTCTGTGTGGGAAATGGCTCGAGAGTAGCAGTTAAGGCCATTGGGACCCTGAAGATTGATTTAGGCTTAGGAAATTTTCTTTTTCTAGATAGTGTTTATTATATTCCTTCCTTGAAAAGGAATTTGATTTCAGTAGGTCTTTTAGTTAAGATTGGTTGCAAACTCATTATTGATTTCAGTGGAATAAAGTTGTTTCAGGGTTCAAATTATCTTGGCTGTGGTGTGTTTATGCATGATTATTTGAAATTAAATTGTTCTGTTGCTCAACAGGAGATTATGTTGATTGAAAATAATCAAAACACTATTAAGAATAACACTGTCACAGAAAAATCACAAGCTCTAGATGCATTCAAAATTTATAAAACTGAAGTTGAATTGCAGCTAGAGAAGAAAATTAAGTTAGTGAGATCTGATAGGGGAGGGGAGTTCTATGGAAAACACACTGAAGCAGGCCAGCAAAAGGGTCCTTTTGCACTATATTTACTGGAAAATGGCATTAAGGCTCAGTACACAACTCCCTATAATCCTACACAAAATGGAGTAGCAGAGAGGAAAAATAGGACTTTATTAAACATGGTGAGAAGTATGATGTGCACTACAGGTCTACCTATATTTTTATGGGGTGAGGCTCTTAAGACTGCAAATTATATTTGCAATAGATCACCTAGTAAATCAGTAGACAAAACACCTTTTGAGTTATGGTGTGGAAGGCAACCTAGCTTGCATCACTGCCATGTGTGGGGATGCAAGGCTGAGGCAAAGTTGCCAAATGCACAGACACACAAGCTTGAATCCAAAACAGTTAGTTGCCATTTTATTGGCTACTGTGAGAAATCTAAAGGCTATAGGTTCTATGCAGCTCAAAATTTTACCAGAACTTTTGAAACTCATCAAGCAAAATTTTTGGATGAAGGTTACAGTAATACTAATTTTGAAGACTTGTCTTTGGAGTTAGAAGAAATTACTGAAAACGAAAATTTACAGAATATCTTGCCCTTAATTCAGACAAATAATGCAGATACAGAAACTCAAAGCCAAAATCAAGTTTTAGAAGAACCAGTAGCCTTAGAACCTCATACAGATGAACCTATGAACGATGTCCATTTAGAAAATAACCCTACAGAAGAACAAATTCCACCTCAGCCTAGGAGATCTCAAAGAGAGAGAAGACCAGTGTATGGAGAAGATAGTGATTTTGTAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000228 GO:0000280 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070192 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Rad51

Protein Analysis

741

Amino Acids

84.47

Weight (kDa)

8.16

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Retrotran_gag_2	PF14223	65 - 217	1.6e-16	gag-polypeptide of LTR copia-type
Pol_BBD	PF22936	311 - 392	5.5e-14	Pol polyprotein, beta-barrel domain
SH3_retrovirus	PF25597	589 - 644	2.7e-11	Retroviral polymerase SH3-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22880 AT3G22880
fragaria_vesca	FvH4_4g03620 FvH4_4g03620 FvH4_4g03740 FvH4_4g03740 FvH4_4g03740
malus_domestica	MD16G1200300.v1.1
prunus_persica	Prupe.1G022500_v2.0.a1 Prupe.1G022500_v2.0.a1
pyrus_communis	pycom16g16950
rosa_chinensis	RchiOBHm_Chr4g0392991 RchiOBHm_Chr4g0393441 RchiOBHm_Chr4g0393481
rosa_laevigata	RLG00000009753 RLG00000009756 RLG00000009776 RLG00000010122
rosa_multiflora	Rmu_sc0008339.1_g000015 Rmu_sc0008931.1_g000008 Rmu_sc0012965.1_g000002
rosa_roxburghii	Rroxscaffold_5G00338100 Rroxscaffold_5G00338400
rosa_rugosa	Rorug03G0309300 Rorug03G0310500 Rorug04G0001200 Rorug04G0001300 Rorug04G0001700 Rorug04G0003100
rosa_samantha	Rh4CG016900
rosa_wichuraiana	Rw4G003560 Rw4G003710 Rw4G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	108, 1380
Acc36I	ACCTGC	1 cut(s)	44
AccB7I	CCANNNNNTGG	1 cut(s)	2198
AccI	GTMKAC	2 cut(s)	1624, 1698
AclWI	GGATC	4 cut(s)	28, 41, 168, 647
AcuI	CTGAAG	4 cut(s)	515, 1091, 1407, 1485
AfaI	GTAC	2 cut(s)	744, 1529
AfiI	CCNNNNNNNGG	5 cut(s)	715, 1137, 1480, 1759, 2198
AflII	CTTAAG	2 cut(s)	713, 1652
AjnI	CCWGG	1 cut(s)	745
Alw21I	GWGCWC	3 cut(s)	209, 447, 1616
Alw44I	GTGCAC	1 cut(s)	1612
AlwI	GGATC	4 cut(s)	28, 41, 168, 647
AlwNI	CAGNNNCTG	1 cut(s)	665
Ama87I	CYCGRG	2 cut(s)	472, 1039
AoxI	GGCC	4 cut(s)	76, 717, 1056, 1471
ApaLI	GTGCAC	1 cut(s)	1612
ApeKI	GCWGC	3 cut(s)	383, 1399, 1877
Asp700I	GAANNNNTTC	1 cut(s)	2151
AspA2I	CCTAGG	1 cut(s)	2165
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	2 cut(s)	1065, 1484
AsuHPI	GGTGA	5 cut(s)	878, 942, 1609, 1655, 1674
AvaI	CYCGRG	2 cut(s)	472, 1039
AvaII	GGWCC	2 cut(s)	1065, 1484
AvrII	CCTAGG	1 cut(s)	2165
BaeGI	GKGCMC	2 cut(s)	819, 1616
BaeI	ACNNNNGTAYC	2 cut(s)	726, 759
BamHI	GGATCC	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	305
BbsI	GAAGAC	3 cut(s)	731, 1962, 2194
Bbv12I	GWGCWC	3 cut(s)	209, 447, 1616
BbvCI	CCTCAGC	3 cut(s)	479, 1773, 2160
BbvI	GCAGC	3 cut(s)	370, 1411, 1889
BccI	CCATC	1 cut(s)	93
BciT130I	CCWGG	1 cut(s)	747
BfmI	CTRYAG	8 cut(s)	27, 72, 550, 666, 756, 1617, 1864, 2139
BfoI	RGCGCY	1 cut(s)	249
BfrI	CTTAAG	2 cut(s)	713, 1652
BfuAI	ACCTGC	1 cut(s)	44
BglII	AGATCT	2 cut(s)	1427, 2171
BisI	GCNGC	3 cut(s)	384, 1400, 1878
BlnI	CCTAGG	1 cut(s)	2165
BlsI	GCNGC	3 cut(s)	385, 1401, 1879
Bme1390I	CCNGG	1 cut(s)	747
Bme18I	GGWCC	2 cut(s)	1065, 1484
BmeT110I	CYCGRG	2 cut(s)	472, 1039
BmgT120I	GGNCC	2 cut(s)	1065, 1484
BmiI	GGNNCC	5 cut(s)	35, 707, 1066, 1067, 1485
BmrFI	CCNGG	1 cut(s)	747
BmrI	ACTGGG	1 cut(s)	601
BmsI	GCATC	6 cut(s)	40, 157, 929, 1354, 1753, 1754
BmuI	ACTGGG	1 cut(s)	601
BpiI	GAAGAC	3 cut(s)	731, 1962, 2194
Bpu10I	CCTNAGC	4 cut(s)	479, 1087, 1773, 2160
BsaBI	GATNNNNATC	1 cut(s)	357
BsaJI	CCNNGG	2 cut(s)	327, 2165
BsaXI	ACNNNNNCTCC	2 cut(s)	1283, 1313
Bsc4I	CCNNNNNNNGG	5 cut(s)	715, 1137, 1480, 1759, 2198
Bse1I	ACTGG	5 cut(s)	596, 938, 1509, 2078, 2192
Bse3DI	GCAATG	1 cut(s)	536
Bse8I	GATNNNNATC	1 cut(s)	357
BseBI	CCWGG	1 cut(s)	747
BseDI	CCNNGG	2 cut(s)	327, 2165
BseGI	GGATG	4 cut(s)	104, 858, 1769, 1933
BseJI	GATNNNNATC	1 cut(s)	357
BseLI	CCNNNNNNNGG	5 cut(s)	715, 1137, 1480, 1759, 2198
BseMI	GCAATG	1 cut(s)	536
BseMII	CTCAG	9 cut(s)	192, 470, 524, 551, 762, 957, 1538, 1764, 2174
BseNI	ACTGG	5 cut(s)	596, 938, 1509, 2078, 2192
BseSI	GKGCMC	2 cut(s)	819, 1616
BseXI	GCAGC	3 cut(s)	370, 1411, 1889
BshFI	GGCC	4 cut(s)	78, 719, 1058, 1473
BsiHKAI	GWGCWC	3 cut(s)	209, 447, 1616
BsiHKCI	CYCGRG	2 cut(s)	472, 1039
BslFI	GGGAC	2 cut(s)	608, 1078
BslI	CCNNNNNNNGG	5 cut(s)	715, 1137, 1480, 1759, 2198
BsmFI	GGGAC	2 cut(s)	608, 1078
BsmI	GAATGC	1 cut(s)	1367
BsnI	GGCC	4 cut(s)	78, 719, 1058, 1473
BsoBI	CYCGRG	2 cut(s)	472, 1039
Bsp1286I	GDGCHC	5 cut(s)	209, 305, 447, 819, 1616
Bsp143I	GATC	7 cut(s)	33, 160, 306, 639, 1427, 1679, 2171
Bsp19I	CCATGG	1 cut(s)	327
BspANI	GGCC	4 cut(s)	78, 719, 1058, 1473
BspCNI	CTCAG	9 cut(s)	193, 471, 523, 552, 763, 956, 1537, 1765, 2173
BspLI	GGNNCC	5 cut(s)	35, 707, 1066, 1067, 1485
BspMAI	CTGCAG	2 cut(s)	31, 670
BspMI	ACCTGC	1 cut(s)	44
BspPI	GGATC	4 cut(s)	28, 41, 168, 647
BspTI	CTTAAG	2 cut(s)	713, 1652
BsrDI	GCAATG	1 cut(s)	536
BsrI	ACTGG	5 cut(s)	596, 938, 1509, 2078, 2192
BssECI	CCNNGG	2 cut(s)	327, 2165
BssMI	GATC	7 cut(s)	33, 160, 306, 639, 1427, 1679, 2171
BssT1I	CCWWGG	2 cut(s)	327, 2165
Bst2UI	CCWGG	1 cut(s)	747
Bst4CI	ACNGT	6 cut(s)	295, 554, 1339, 1822, 1847, 1940
Bst6I	CTCTTC	2 cut(s)	627, 818
BstAFI	CTTAAG	2 cut(s)	713, 1652
BstC8I	GCNNGC	4 cut(s)	324, 1471, 1475, 1742
BstDSI	CCRYGG	1 cut(s)	327
BstENI	CCTNNNNNAGG	1 cut(s)	1135
BstF5I	GGATG	4 cut(s)	104, 858, 1769, 1933
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	7 cut(s)	36, 163, 309, 642, 1430, 1682, 2174
BstMBI	GATC	7 cut(s)	33, 160, 306, 639, 1427, 1679, 2171
BstMWI	GCNNNNNNNGC	4 cut(s)	190, 801, 1055, 1364
BstNI	CCWGG	1 cut(s)	747
BstNSI	RCATGY	1 cut(s)	524
BstSCI	CCNGG	1 cut(s)	745
BstSFI	CTRYAG	8 cut(s)	27, 72, 550, 666, 756, 1617, 1864, 2139
BstSLI	GKGCMC	2 cut(s)	819, 1616
BstV1I	GCAGC	3 cut(s)	370, 1411, 1889
BstV2I	GAAGAC	3 cut(s)	731, 1962, 2194
BstX2I	RGATCY	4 cut(s)	33, 160, 1427, 2171
BstXI	CCANNNNNNTGG	1 cut(s)	1838
BstYI	RGATCY	4 cut(s)	33, 160, 1427, 2171
BsuRI	GGCC	4 cut(s)	78, 719, 1058, 1473
BtgI	CCRYGG	1 cut(s)	327
BtsCI	GGATG	4 cut(s)	104, 858, 1769, 1933
BtsI	GCAGTG	2 cut(s)	841, 1747
BtsIMutI	CAGTG	7 cut(s)	198, 841, 1204, 1335, 1461, 1747, 2199
BveI	ACCTGC	1 cut(s)	44
Cac8I	GCNNGC	4 cut(s)	324, 1471, 1475, 1742
CaiI	CAGNNNCTG	1 cut(s)	665
CfoI	GCGC	1 cut(s)	248
Cfr13I	GGNCC	2 cut(s)	1065, 1484
Csp6I	GTAC	2 cut(s)	743, 1528
CviAII	CATG	9 cut(s)	157, 328, 493, 521, 575, 820, 1253, 1594, 1754
CviQI	GTAC	2 cut(s)	743, 1528
DpnI	GATC	7 cut(s)	35, 162, 308, 641, 1429, 1681, 2173
DpnII	GATC	7 cut(s)	33, 160, 306, 639, 1427, 1679, 2171
Eam1104I	CTCTTC	2 cut(s)	627, 818
EarI	CTCTTC	2 cut(s)	627, 818
Eco130I	CCWWGG	2 cut(s)	327, 2165
Eco24I	GRGCYC	1 cut(s)	305
Eco47I	GGWCC	2 cut(s)	1065, 1484
Eco57I	CTGAAG	4 cut(s)	515, 1091, 1407, 1485
Eco88I	CYCGRG	2 cut(s)	472, 1039
EcoNI	CCTNNNNNAGG	1 cut(s)	1135
EcoO109I	RGGNCCY	2 cut(s)	1065, 1484
EcoRII	CCWGG	1 cut(s)	745
EcoT14I	CCWWGG	2 cut(s)	327, 2165
EcoT22I	ATGCAT	3 cut(s)	150, 1254, 1369
EcoT38I	GRGCYC	1 cut(s)	305
ErhI	CCWWGG	2 cut(s)	327, 2165
FaeI	CATG	9 cut(s)	160, 331, 496, 524, 578, 823, 1256, 1597, 1757
FaqI	GGGAC	2 cut(s)	608, 1078
FatI	CATG	9 cut(s)	156, 327, 492, 520, 574, 819, 1252, 1593, 1753
FblI	GTMKAC	2 cut(s)	1624, 1698
Fnu4HI	GCNGC	3 cut(s)	384, 1400, 1878
FokI	GGATG	4 cut(s)	111, 865, 1776, 1940
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	3 cut(s)	384, 1400, 1878
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	3 cut(s)	384, 1400, 1878
HaeII	RGCGCY	1 cut(s)	249
HaeIII	GGCC	4 cut(s)	78, 719, 1058, 1473
HhaI	GCGC	1 cut(s)	248
Hin1II	CATG	9 cut(s)	160, 331, 496, 524, 578, 823, 1256, 1597, 1757
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HindIII	AAGCTT	1 cut(s)	1805
HinfI	GANTC	5 cut(s)	506, 584, 869, 941, 1811
HphI	GGTGA	5 cut(s)	878, 942, 1609, 1655, 1674
Hpy166II	GTNNAC	5 cut(s)	673, 1530, 1614, 1625, 1699
Hpy188I	TCNGA	4 cut(s)	289, 644, 1432, 2025
Hpy188III	TCNNGA	6 cut(s)	37, 362, 896, 1041, 1106, 1361
Hpy8I	GTNNAC	5 cut(s)	673, 1530, 1614, 1625, 1699
HpyAV	CCTTC	5 cut(s)	644, 856, 1137, 1722, 1925
HpyCH4III	ACNGT	6 cut(s)	295, 554, 1339, 1822, 1847, 1940
HpyCH4IV	ACGT	1 cut(s)	42
HpyF10VI	GCNNNNNNNGC	4 cut(s)	190, 801, 1055, 1364
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	9 cut(s)	160, 331, 496, 524, 578, 823, 1256, 1597, 1757
HspAI	GCGC	1 cut(s)	246
KflI	GGGWCCC	1 cut(s)	1065
Kzo9I	GATC	7 cut(s)	33, 160, 306, 639, 1427, 1679, 2171
LmnI	GCTCC	2 cut(s)	442, 454
Lsp1109I	GCAGC	3 cut(s)	370, 1411, 1889
LweI	GCATC	6 cut(s)	40, 157, 929, 1354, 1753, 1754
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	5 cut(s)	67, 368, 554, 1339, 1934
MalI	GATC	7 cut(s)	35, 162, 308, 641, 1429, 1681, 2173
MboI	GATC	7 cut(s)	33, 160, 306, 639, 1427, 1679, 2171
MflI	RGATCY	4 cut(s)	33, 160, 1427, 2171
MhlI	GDGCHC	5 cut(s)	209, 305, 447, 819, 1616
MlyI	GAGTC	4 cut(s)	500, 593, 878, 935
Mph1103I	ATGCAT	3 cut(s)	150, 1254, 1369
MroXI	GAANNNNTTC	1 cut(s)	2151
MslI	CAYNNNNRTG	2 cut(s)	1752, 2100
MspCI	CTTAAG	2 cut(s)	713, 1652
MspR9I	CCNGG	1 cut(s)	747
Mva1269I	GAATGC	1 cut(s)	1367
MvaI	CCWGG	1 cut(s)	747
MwoI	GCNNNNNNNGC	4 cut(s)	190, 801, 1055, 1364
NcoI	CCATGG	1 cut(s)	327
NdeII	GATC	7 cut(s)	33, 160, 306, 639, 1427, 1679, 2171
NlaIII	CATG	9 cut(s)	160, 331, 496, 524, 578, 823, 1256, 1597, 1757
NlaIV	GGNNCC	5 cut(s)	35, 707, 1066, 1067, 1485
NmuCI	GTSAC	3 cut(s)	67, 368, 1339
NsiI	ATGCAT	3 cut(s)	150, 1254, 1369
NspI	RCATGY	1 cut(s)	524
PaeR7I	CTCGAG	2 cut(s)	472, 1039
PctI	GAATGC	1 cut(s)	1367
PdmI	GAANNNNTTC	1 cut(s)	2151
PfeI	GAWTC	1 cut(s)	1811
PflMI	CCANNNNNTGG	1 cut(s)	2198
PkrI	GCNGC	3 cut(s)	385, 1401, 1879
PleI	GAGTC	4 cut(s)	500, 592, 877, 935
PpsI	GAGTC	4 cut(s)	500, 592, 877, 935
PpuMI	RGGWCCY	2 cut(s)	1065, 1484
PsiI	TTATAA	2 cut(s)	108, 1380
Psp5II	RGGWCCY	2 cut(s)	1065, 1484
Psp6I	CCWGG	1 cut(s)	745
PspGI	CCWGG	1 cut(s)	745
PspN4I	GGNNCC	5 cut(s)	35, 707, 1066, 1067, 1485
PspPI	GGNCC	2 cut(s)	1065, 1484
PspPPI	RGGWCCY	2 cut(s)	1065, 1484
PspXI	VCTCGAGB	1 cut(s)	472
PstI	CTGCAG	2 cut(s)	31, 670
PstNI	CAGNNNCTG	1 cut(s)	665
PsuI	RGATCY	4 cut(s)	33, 160, 1427, 2171
RsaI	GTAC	2 cut(s)	744, 1529
RsaNI	GTAC	2 cut(s)	743, 1528
RseI	CAYNNNNRTG	2 cut(s)	1752, 2100
SatI	GCNGC	3 cut(s)	384, 1400, 1878
Sau3AI	GATC	7 cut(s)	33, 160, 306, 639, 1427, 1679, 2171
Sau96I	GGNCC	2 cut(s)	1065, 1484
SchI	GAGTC	4 cut(s)	500, 593, 878, 935
ScrFI	CCNGG	1 cut(s)	747
SduI	GDGCHC	5 cut(s)	209, 305, 447, 819, 1616
SfaNI	GCATC	6 cut(s)	40, 157, 929, 1354, 1753, 1754
SfcI	CTRYAG	8 cut(s)	27, 72, 550, 666, 756, 1617, 1864, 2139
Sfr274I	CTCGAG	2 cut(s)	472, 1039
SinI	GGWCC	2 cut(s)	1065, 1484
SlaI	CTCGAG	2 cut(s)	472, 1039
SmiMI	CAYNNNNRTG	2 cut(s)	1752, 2100
SmlI	CTYRAG	4 cut(s)	472, 713, 1039, 1652
SmoI	CTYRAG	4 cut(s)	472, 713, 1039, 1652
SspI	AATATT	2 cut(s)	227, 402
StyD4I	CCNGG	1 cut(s)	745
StyI	CCWWGG	2 cut(s)	327, 2165
TaaI	ACNGT	6 cut(s)	295, 554, 1339, 1822, 1847, 1940
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	3 cut(s)	305, 473, 1040
TatI	WGTACW	1 cut(s)	1527
TfiI	GAWTC	1 cut(s)	1811
TscAI	CASTG	7 cut(s)	205, 841, 1204, 1342, 1468, 1754, 2199
TseFI	GTSAC	3 cut(s)	67, 368, 1339
TseI	GCWGC	3 cut(s)	383, 1399, 1877
Tsp45I	GTSAC	3 cut(s)	67, 368, 1339
TspDTI	ATGAA	4 cut(s)	836, 1944, 2118, 2126
TspRI	CASTG	7 cut(s)	205, 841, 1204, 1342, 1468, 1754, 2199
Van91I	CCANNNNNTGG	1 cut(s)	2198
Vha464I	CTTAAG	2 cut(s)	713, 1652
VneI	GTGCAC	1 cut(s)	1612
VpaK11BI	GGWCC	2 cut(s)	1065, 1484
XagI	CCTNNNNNAGG	1 cut(s)	1135
XbaI	TCTAGA	3 cut(s)	895, 1105, 1360
XceI	RCATGY	1 cut(s)	524
XhoI	CTCGAG	2 cut(s)	472, 1039
XmaJI	CCTAGG	1 cut(s)	2165
XmiI	GTMKAC	2 cut(s)	1624, 1698
XmnI	GAANNNNTTC	1 cut(s)	2151
Zsp2I	ATGCAT	3 cut(s)	150, 1254, 1369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.