Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004198

Physical Location & Seq

Genomic Coordinates Reverse (-)

63236656 .. 63238867

Gene Structure 2212 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010122

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTACGAGAACCAGAAAGATATGTATGATAATGAATCTAATGCAGTGGTTGGCTTGAAGTTCGTGCACAATGCATTGAATCATTTCAACCAGACCGGGAGGGAACTCAAGTACAAGGACTTATTTGGAAGAGTATATGTGAAAATACAGTTTTTCAAACATTTTGGTAATCAAGCGCTTCCTCTATCTCATATTCTTCTGGAGCTAAAAAAGATGTATGGACTGAAGCTCATCTGTGAAGCATCTTTTAGAGGAAAAAAGGCTTGCTTGGAAATTAAAGCCGGTCACCGTGTTCAGAAGACAGTGGGATGGGTTGAAACTCGTGCAATCACTGAAGTCATTGGAGAATCTGGGTCTGGGAAAACGGAGCTTGCTCACACACTCAGTGTAACTACACAAGTTGCTTATATTGATACTGAGGGAACTTACTGCGGTGAGCAAATTAGACCTATTGCTGTAAGATTCAAGTTGGACTCAGAAGCTGTCCTCGACAATATCATTGTGTATCCTCATGCTTGTACATATGAGCATCAGTATAATATGCTTCTTGGTCTAGCTGCAAAAATGGCTAAAAGAGCCATTCAGACTTCTGGTAAGGACTTCAGTACTTGCCAGAACTCTGTTATGATTGTGGACTGGGTGATTTCTCTTTTTCGAGTTGATTATACTGGGAGAGAGCCTGCAGATTGCCAGCAAAAACTTGCACAGATGCTTTTCCGATTACTAAAGATTGCTGAGGAATTTAATGTTGCTGTCTACATTACCAACGAAGCTGACCATGGCAGAGTATTATTCATTTCTGATCCAAAGAAACCAGCAGGAGGTCATGTGCTTGCCCATGCAGCGACCACAAAGCTCATCTTTAGAAAAGGCAAAGGGAAACAGCGTGTCTGCAAGGTGTTTGATGACCTAGACCTGCCTAAGCCTGAAGCGATATCCTTCTCATCTGTTCCATTTATATTTTGTACGACTTTTATCATTACTTGCATCATGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000228 GO:0000280 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070192 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Rad51

Protein Analysis

333

Amino Acids

37.47

Weight (kDa)

8.91

Isoelectric Point (pI)

22.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	102 - 312	4.3e-57	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22880 AT3G22880
fragaria_vesca	FvH4_4g03620 FvH4_4g03620 FvH4_4g03740 FvH4_4g03740 FvH4_4g03740
malus_domestica	MD16G1200300.v1.1
prunus_persica	Prupe.1G022500_v2.0.a1 Prupe.1G022500_v2.0.a1
pyrus_communis	pycom16g16950
rosa_chinensis	RchiOBHm_Chr4g0392991 RchiOBHm_Chr4g0393441 RchiOBHm_Chr4g0393481
rosa_laevigata	RLG00000009753 RLG00000009756 RLG00000009776 RLG00000010122
rosa_multiflora	Rmu_sc0008339.1_g000015 Rmu_sc0008931.1_g000008 Rmu_sc0012965.1_g000002
rosa_roxburghii	Rroxscaffold_5G00338100 Rroxscaffold_5G00338400
rosa_rugosa	Rorug03G0309300 Rorug03G0310500 Rorug04G0001200 Rorug04G0001300 Rorug04G0001700 Rorug04G0003100
rosa_samantha	Rh4CG016900
rosa_wichuraiana	Rw4G003560 Rw4G003710 Rw4G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	924
AccI	GTMKAC	1 cut(s)	756
AciI	CCGC	1 cut(s)	432
AclWI	GGATC	1 cut(s)	797
AcsI	RAATTY	1 cut(s)	740
AcuI	CTGAAG	4 cut(s)	245, 354, 586, 948
AdeI	CACNNNGTG	1 cut(s)	386
AfaI	GTAC	5 cut(s)	5, 113, 520, 607, 967
AfeI	AGCGCT	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	821
AgsI	TTSAA	6 cut(s)	58, 79, 88, 157, 317, 466
AluBI	AGCT	7 cut(s)	205, 229, 370, 482, 557, 773, 856
AluI	AGCT	7 cut(s)	205, 229, 370, 482, 557, 773, 856
Alw21I	GWGCWC	1 cut(s)	69
Alw44I	GTGCAC	1 cut(s)	65
AlwI	GGATC	1 cut(s)	797
AlwNI	CAGNNNCTG	1 cut(s)	482
Aor51HI	AGCGCT	1 cut(s)	177
ApaLI	GTGCAC	1 cut(s)	65
ApeKI	GCWGC	2 cut(s)	557, 842
ApoI	RAATTY	1 cut(s)	740
Asp700I	GAANNNNTTC	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	178
AsuC2I	CCSGG	1 cut(s)	97
AsuHPI	GGTGA	3 cut(s)	278, 446, 652
BaeGI	GKGCMC	1 cut(s)	69
BauI	CACGAG	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	69
BbvCI	CCTCAGC	1 cut(s)	735
BbvI	GCAGC	2 cut(s)	544, 854
BccI	CCATC	1 cut(s)	303
BciVI	GTATCC	1 cut(s)	516
BcnI	CCSGG	1 cut(s)	97
BfaI	CTAG	2 cut(s)	554, 911
BfmI	CTRYAG	1 cut(s)	681
BfoI	RGCGCY	1 cut(s)	179
BfuAI	ACCTGC	1 cut(s)	924
BfuI	GTATCC	1 cut(s)	516
BisI	GCNGC	2 cut(s)	558, 843
BlsI	GCNGC	2 cut(s)	559, 844
BmcAI	AGTACT	1 cut(s)	607
Bme1390I	CCNGG	1 cut(s)	97
BmrFI	CCNGG	1 cut(s)	97
BmrI	ACTGGG	2 cut(s)	646, 678
BmsI	GCATC	3 cut(s)	251, 538, 699
BmuI	ACTGGG	2 cut(s)	646, 678
BpiI	GAAGAC	1 cut(s)	305
BpmI	CTGGAG	1 cut(s)	221
Bpu10I	CCTNAGC	2 cut(s)	735, 921
BpuEI	CTTGAG	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	97
BsaJI	CCNNGG	1 cut(s)	778
BsaXI	ACNNNNNCTCC	2 cut(s)	813, 843
Bsc4I	CCNNNNNNNGG	1 cut(s)	821
Bse118I	RCCGGY	1 cut(s)	281
Bse1I	ACTGG	2 cut(s)	641, 673
BseDI	CCNNGG	1 cut(s)	778
BseGI	GGATG	1 cut(s)	314
BseLI	CCNNNNNNNGG	1 cut(s)	821
BseMII	CTCAG	4 cut(s)	397, 408, 489, 726
BseNI	ACTGG	2 cut(s)	641, 673
BseSI	GKGCMC	1 cut(s)	69
BseXI	GCAGC	2 cut(s)	544, 854
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	2 cut(s)	96, 282
BslI	CCNNNNNNNGG	1 cut(s)	821
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp1407I	TGTACA	1 cut(s)	518
Bsp143I	GATC	1 cut(s)	802
Bsp19I	CCATGG	1 cut(s)	778
BspACI	CCGC	1 cut(s)	432
BspCNI	CTCAG	4 cut(s)	396, 409, 488, 727
BspMAI	CTGCAG	1 cut(s)	685
BspMI	ACCTGC	1 cut(s)	924
BspPI	GGATC	1 cut(s)	797
BsrFI	RCCGGY	1 cut(s)	281
BsrGI	TGTACA	1 cut(s)	518
BsrI	ACTGG	2 cut(s)	641, 673
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	1 cut(s)	778
BssMI	GATC	1 cut(s)	802
BssSI	CACGAG	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	778
Bst2BI	CACGAG	1 cut(s)	321
Bst4CI	ACNGT	3 cut(s)	150, 290, 304
Bst6I	CTCTTC	1 cut(s)	124
BstAUI	TGTACA	1 cut(s)	518
BstC8I	GCNNGC	5 cut(s)	265, 372, 681, 692, 834
BstDEI	CTNAG	5 cut(s)	383, 417, 475, 735, 921
BstDSI	CCRYGG	1 cut(s)	778
BstEII	GGTNACC	1 cut(s)	284
BstF5I	GGATG	1 cut(s)	314
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	1 cut(s)	805
BstMBI	GATC	1 cut(s)	802
BstMWI	GCNNNNNNNGC	3 cut(s)	566, 575, 842
BstPI	GGTNACC	1 cut(s)	284
BstSCI	CCNGG	1 cut(s)	95
BstSFI	CTRYAG	1 cut(s)	681
BstSLI	GKGCMC	1 cut(s)	69
BstV1I	GCAGC	2 cut(s)	544, 854
BstV2I	GAAGAC	1 cut(s)	305
BsuI	GTATCC	1 cut(s)	516
BtgI	CCRYGG	1 cut(s)	778
BtsCI	GGATG	1 cut(s)	314
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	4 cut(s)	51, 309, 330, 391
BveI	ACCTGC	1 cut(s)	924
Cac8I	GCNNGC	5 cut(s)	265, 372, 681, 692, 834
CaiI	CAGNNNCTG	1 cut(s)	482
CfoI	GCGC	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	281
Csp6I	GTAC	5 cut(s)	4, 112, 519, 606, 966
CviAII	CATG	5 cut(s)	512, 779, 827, 839, 991
CviQI	GTAC	5 cut(s)	4, 112, 519, 606, 966
DdeI	CTNAG	5 cut(s)	383, 417, 475, 735, 921
DpnI	GATC	1 cut(s)	804
DpnII	GATC	1 cut(s)	802
DraIII	CACNNNGTG	1 cut(s)	386
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	778
Eco32I	GATATC	1 cut(s)	936
Eco47III	AGCGCT	1 cut(s)	177
Eco57I	CTGAAG	4 cut(s)	245, 354, 586, 948
Eco91I	GGTNACC	1 cut(s)	284
EcoO65I	GGTNACC	1 cut(s)	284
EcoRV	GATATC	1 cut(s)	936
EcoT14I	CCWWGG	1 cut(s)	778
EcoT22I	ATGCAT	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	778
FaeI	CATG	5 cut(s)	515, 782, 830, 842, 994
FalI	AAGNNNNNCTT	4 cut(s)	251, 283, 845, 877
FatI	CATG	5 cut(s)	511, 778, 826, 838, 990
FauNDI	CATATG	1 cut(s)	523
FblI	GTMKAC	1 cut(s)	756
Fnu4HI	GCNGC	2 cut(s)	558, 843
FokI	GGATG	1 cut(s)	321
Fsp4HI	GCNGC	2 cut(s)	558, 843
FspBI	CTAG	2 cut(s)	554, 911
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	2 cut(s)	558, 843
GsuI	CTGGAG	1 cut(s)	221
HaeII	RGCGCY	1 cut(s)	179
HapII	CCGG	2 cut(s)	96, 282
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	5 cut(s)	515, 782, 830, 842, 994
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	5 cut(s)	35, 79, 347, 462, 473
HpaII	CCGG	2 cut(s)	96, 282
HphI	GGTGA	3 cut(s)	278, 446, 652
Hpy166II	GTNNAC	3 cut(s)	67, 634, 757
Hpy188I	TCNGA	5 cut(s)	297, 478, 585, 719, 802
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	3 cut(s)	67, 634, 757
HpyAV	CCTTC	1 cut(s)	949
HpyCH4III	ACNGT	3 cut(s)	150, 290, 304
HpyF10VI	GCNNNNNNNGC	3 cut(s)	566, 575, 842
HpyF3I	CTNAG	5 cut(s)	383, 417, 475, 735, 921
Hsp92II	CATG	5 cut(s)	515, 782, 830, 842, 994
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	1 cut(s)	802
LmnI	GCTCC	2 cut(s)	202, 367
Lsp1109I	GCAGC	2 cut(s)	544, 854
LweI	GCATC	3 cut(s)	251, 538, 699
MaeI	CTAG	2 cut(s)	554, 911
MaeIII	GTNAC	2 cut(s)	284, 388
MalI	GATC	1 cut(s)	804
MboI	GATC	1 cut(s)	802
MboII	GAAGA	3 cut(s)	141, 188, 310
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	3 cut(s)	273, 441, 740
MlyI	GAGTC	1 cut(s)	467
MmeI	TCCRAC	1 cut(s)	450
MnlI	CCTC	8 cut(s)	93, 192, 245, 412, 497, 519, 730, 815
Mph1103I	ATGCAT	1 cut(s)	76
MroXI	GAANNNNTTC	1 cut(s)	83
MseI	TTAA	2 cut(s)	276, 744
MspI	CCGG	2 cut(s)	96, 282
MspR9I	CCNGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	3 cut(s)	566, 575, 842
NciI	CCSGG	1 cut(s)	97
NcoI	CCATGG	1 cut(s)	778
NdeI	CATATG	1 cut(s)	523
NdeII	GATC	1 cut(s)	802
NlaIII	CATG	5 cut(s)	515, 782, 830, 842, 994
NmuCI	GTSAC	1 cut(s)	284
NsiI	ATGCAT	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	4 cut(s)	35, 79, 347, 462
PkrI	GCNGC	2 cut(s)	559, 844
PleI	GAGTC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	467
PspEI	GGTNACC	1 cut(s)	284
PstI	CTGCAG	1 cut(s)	685
PstNI	CAGNNNCTG	1 cut(s)	482
RsaI	GTAC	5 cut(s)	5, 113, 520, 607, 967
RsaNI	GTAC	5 cut(s)	4, 112, 519, 606, 966
SaqAI	TTAA	2 cut(s)	276, 744
SatI	GCNGC	2 cut(s)	558, 843
Sau3AI	GATC	1 cut(s)	802
ScaI	AGTACT	1 cut(s)	607
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	1 cut(s)	97
SduI	GDGCHC	1 cut(s)	69
SfaNI	GCATC	3 cut(s)	251, 538, 699
SfcI	CTRYAG	1 cut(s)	681
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	3 cut(s)	273, 441, 740
SsiI	CCGC	1 cut(s)	432
SspMI	CTAG	2 cut(s)	554, 911
StyD4I	CCNGG	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	778
TaaI	ACNGT	3 cut(s)	150, 290, 304
TaqI	TCGA	2 cut(s)	489, 655
TasI	AATT	3 cut(s)	273, 441, 740
TatI	WGTACW	3 cut(s)	111, 518, 605
TfiI	GAWTC	4 cut(s)	35, 79, 347, 462
Tru1I	TTAA	2 cut(s)	276, 744
Tru9I	TTAA	2 cut(s)	276, 744
TscAI	CASTG	4 cut(s)	51, 309, 337, 391
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	2 cut(s)	557, 842
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	2 cut(s)	48, 784
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	4 cut(s)	51, 309, 337, 391
VneI	GTGCAC	1 cut(s)	65
XapI	RAATTY	1 cut(s)	740
XmiI	GTMKAC	1 cut(s)	756
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	2 cut(s)	554, 911
ZrmI	AGTACT	1 cut(s)	607
Zsp2I	ATGCAT	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.