Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012965.1

Orthogroup ID

OG0004198

Physical Location & Seq

Genomic Coordinates Reverse (-)

3656 .. 6736

Gene Structure 3081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012965.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

atgtcaatcccctcccattcatctgaaattcaaatttcggatactcactctctctctccaccctccccatttctctctgtaagatttccactctccggaaacaaccacacgtcgccgtttcgtcaacctaaaccacagcgagcgaagatgaaagccgaagatcaaagccagatgcagctcgtcgaacgcgaagacatcgacgatgaagacgacctcttcgaagccatcgataagctgattgctcagggaatcaatgccggagatgtaaagaagcttcaggatgctgggatctacacctgcaatggtttgatgatgcacaccaagaagaacttgactggaattaaaggcttatctgaggccaaagttgataagatttgtgaagctgctgagaagatagtgaactttggatatataactggaagtgatgctctaaccagaaggaagtctgtgattcgcattacaactgggagccaagcacttgatgaactattaggcggaggggttgaaactctagcaatcacagaagcctttggggaatttcggtctgggaaaacacagcttgcacacacactctgcgtaactacacagcttcctactaacatgcatggagggaatggaaaggttgcttacattgatactgagggaacattccggcctgaacgaattatacctatagctgaaagatttggcttagacccaggagctgttctcgacaatatcgtttatgctcgtgcttttacatatgagcatcagtataatctgcttcttggtctagctgcaaaaatggctgaagagccattcagacttctgattgtggactcggtgattgctctatttcgtgttgattttactgggagaggagagcttgcagatcgccagcaaaaacttgcagagatgctttcccgattaataaagattgctgaggaattcaatgtcgctgtctatatgaccaaccaagtgatagctgaccccggtggtggagtgttcatatctgatccaaagaaaccagcaggaggtcatgtgctcgcccatgcagcaaccataaggctcatgtttagaaaaggcaaaggggaacagcgtgtctgcaaggtgtttgatgccccaaacctgcctgaggctgaagcaatatccttctcatttgctttattgatatactttatgacttctatcattacctgcatcatcctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000228 GO:0000280 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070192 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Rad51

Protein Analysis

396

Amino Acids

43.46

Weight (kDa)

6.03

Isoelectric Point (pI)

30.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22880 AT3G22880
fragaria_vesca	FvH4_4g03620 FvH4_4g03620 FvH4_4g03740 FvH4_4g03740 FvH4_4g03740
malus_domestica	MD16G1200300.v1.1
prunus_persica	Prupe.1G022500_v2.0.a1 Prupe.1G022500_v2.0.a1
pyrus_communis	pycom16g16950
rosa_chinensis	RchiOBHm_Chr4g0392991 RchiOBHm_Chr4g0393441 RchiOBHm_Chr4g0393481
rosa_laevigata	RLG00000009753 RLG00000009756 RLG00000009776 RLG00000010122
rosa_multiflora	Rmu_sc0008339.1_g000015 Rmu_sc0008931.1_g000008 Rmu_sc0012965.1_g000002
rosa_roxburghii	Rroxscaffold_5G00338100 Rroxscaffold_5G00338400
rosa_rugosa	Rorug03G0309300 Rorug03G0310500 Rorug04G0001200 Rorug04G0001300 Rorug04G0001700 Rorug04G0003100
rosa_samantha	Rh4CG016900
rosa_wichuraiana	Rw4G003560 Rw4G003710 Rw4G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	305
Acc36I	ACCTGC	3 cut(s)	305, 1116, 1184
AccII	CGCG	1 cut(s)	189
AccIII	TCCGGA	1 cut(s)	95
AciI	CCGC	1 cut(s)	495
AclWI	GGATC	2 cut(s)	296, 989
AcsI	RAATTY	4 cut(s)	27, 33, 536, 926
AcuI	CTGAAG	3 cut(s)	260, 810, 1140
AfiI	CCNNNNNNNGG	4 cut(s)	95, 977, 1013, 1114
AflIII	ACRYGT	1 cut(s)	108
AgsI	TTSAA	3 cut(s)	32, 506, 931
AjiI	CACGTC	1 cut(s)	111
AjnI	CCWGG	1 cut(s)	697
Alw21I	GWGCWC	1 cut(s)	1026
AlwI	GGATC	2 cut(s)	296, 989
AlwNI	CAGNNNCTG	1 cut(s)	704
Aor13HI	TCCGGA	1 cut(s)	95
AoxI	GGCC	2 cut(s)	357, 653
ApeKI	GCWGC	4 cut(s)	175, 383, 776, 1034
ApoI	RAATTY	4 cut(s)	27, 33, 536, 926
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
AseI	ATTAAT	1 cut(s)	908
AsuC2I	CCSGG	1 cut(s)	972
AsuHPI	GGTGA	1 cut(s)	835
AsuII	TTCGAA	1 cut(s)	219
AxyI	CCTNAGG	1 cut(s)	1113
BarI	GAAGNNNNNNTAC	2 cut(s)	258, 290
BauI	CACGAG	1 cut(s)	729
BbsI	GAAGAC	2 cut(s)	198, 213
Bbv12I	GWGCWC	1 cut(s)	1026
BbvCI	CCTCAGC	1 cut(s)	921
BbvI	GCAGC	4 cut(s)	187, 370, 763, 1046
BccI	CCATC	1 cut(s)	233
BceAI	ACGGC	1 cut(s)	100
BciT130I	CCWGG	1 cut(s)	699
BciVI	GTATCC	1 cut(s)	34
BcnI	CCSGG	1 cut(s)	972
BfaI	CTAG	2 cut(s)	512, 773
BfmI	CTRYAG	1 cut(s)	672
BfuAI	ACCTGC	3 cut(s)	305, 1116, 1184
BfuI	GTATCC	1 cut(s)	34
BisI	GCNGC	4 cut(s)	176, 384, 777, 1035
BlsI	GCNGC	4 cut(s)	177, 385, 778, 1036
Bme1390I	CCNGG	2 cut(s)	699, 972
BmgBI	CACGTC	1 cut(s)	111
BmiI	GGNNCC	1 cut(s)	470
BmrFI	CCNGG	2 cut(s)	699, 972
BmrI	ACTGGG	2 cut(s)	474, 861
BmsI	GCATC	7 cut(s)	162, 271, 303, 415, 757, 885, 1087
BmuI	ACTGGG	2 cut(s)	474, 861
BpiI	GAAGAC	2 cut(s)	198, 213
BplI	GAGNNNNNCTC	2 cut(s)	693, 725
Bpu10I	CCTNAGC	2 cut(s)	243, 921
Bpu14I	TTCGAA	1 cut(s)	219
BpuMI	CCSGG	1 cut(s)	972
Bsa29I	ATCGAT	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	697, 970
BsaWI	WCCGGW	1 cut(s)	95
BsaXI	ACNNNNNCTCC	2 cut(s)	1005, 1035
Bsc4I	CCNNNNNNNGG	4 cut(s)	95, 977, 1013, 1114
Bse1I	ACTGG	4 cut(s)	340, 421, 469, 856
Bse21I	CCTNAGG	1 cut(s)	1113
Bse3DI	GCAATG	1 cut(s)	307
BseAI	TCCGGA	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	699
BseCI	ATCGAT	1 cut(s)	228
BseDI	CCNNGG	2 cut(s)	697, 970
BseGI	GGATG	2 cut(s)	286, 1182
BseLI	CCNNNNNNNGG	4 cut(s)	95, 977, 1013, 1114
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	6 cut(s)	257, 345, 378, 630, 912, 1104
BseNI	ACTGG	4 cut(s)	340, 421, 469, 856
BseRI	GAGGAG	1 cut(s)	873
BseXI	GCAGC	4 cut(s)	187, 370, 763, 1046
BseYI	CCCAGC	1 cut(s)	284
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	2 cut(s)	359, 655
BshVI	ATCGAT	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	1026
BsiSI	CCGG	4 cut(s)	96, 258, 652, 972
BslI	CCNNNNNNNGG	4 cut(s)	95, 977, 1013, 1114
BsnI	GGCC	2 cut(s)	359, 655
Bsp119I	TTCGAA	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	1026
Bsp13I	TCCGGA	1 cut(s)	95
Bsp143I	GATC	4 cut(s)	160, 288, 871, 994
BspACI	CCGC	1 cut(s)	495
BspANI	GGCC	2 cut(s)	359, 655
BspCNI	CTCAG	6 cut(s)	256, 346, 379, 631, 913, 1105
BspDI	ATCGAT	1 cut(s)	228
BspEI	TCCGGA	1 cut(s)	95
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	470
BspMI	ACCTGC	3 cut(s)	305, 1116, 1184
BspPI	GGATC	2 cut(s)	296, 989
BspQI	GCTCTTC	1 cut(s)	786
BspT104I	TTCGAA	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	307
BsrI	ACTGG	4 cut(s)	340, 421, 469, 856
BssECI	CCNNGG	2 cut(s)	697, 970
BssMI	GATC	4 cut(s)	160, 288, 871, 994
BssSI	CACGAG	1 cut(s)	729
Bst2BI	CACGAG	1 cut(s)	729
Bst2UI	CCWGG	1 cut(s)	699
Bst6I	CTCTTC	2 cut(s)	221, 786
BstBI	TTCGAA	1 cut(s)	219
BstC8I	GCNNGC	5 cut(s)	141, 561, 867, 878, 1026
BstDEI	CTNAG	7 cut(s)	243, 354, 387, 639, 691, 921, 1113
BstENI	CCTNNNNNAGG	1 cut(s)	1112
BstF5I	GGATG	2 cut(s)	286, 1182
BstFNI	CGCG	1 cut(s)	189
BstKTI	GATC	4 cut(s)	163, 291, 874, 997
BstMBI	GATC	4 cut(s)	160, 288, 871, 994
BstMWI	GCNNNNNNNGC	2 cut(s)	785, 1034
BstNI	CCWGG	1 cut(s)	699
BstNSI	RCATGY	1 cut(s)	604
BstSCI	CCNGG	2 cut(s)	697, 970
BstSFI	CTRYAG	1 cut(s)	672
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	4 cut(s)	187, 370, 763, 1046
BstV2I	GAAGAC	2 cut(s)	198, 213
BstX2I	RGATCY	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	288
Bsu15I	ATCGAT	1 cut(s)	228
Bsu36I	CCTNAGG	1 cut(s)	1113
BsuI	GTATCC	1 cut(s)	34
BsuRI	GGCC	2 cut(s)	359, 655
BsuTUI	ATCGAT	1 cut(s)	228
BtrI	CACGTC	1 cut(s)	111
BtsCI	GGATG	2 cut(s)	286, 1182
BveI	ACCTGC	3 cut(s)	305, 1116, 1184
Cac8I	GCNNGC	5 cut(s)	141, 561, 867, 878, 1026
CaiI	CAGNNNCTG	1 cut(s)	704
ClaI	ATCGAT	1 cut(s)	228
CviAII	CATG	5 cut(s)	601, 605, 1019, 1031, 1051
DdeI	CTNAG	7 cut(s)	243, 354, 387, 639, 691, 921, 1113
DpnI	GATC	4 cut(s)	162, 290, 873, 996
DpnII	GATC	4 cut(s)	160, 288, 871, 994
Eam1104I	CTCTTC	2 cut(s)	221, 786
EarI	CTCTTC	2 cut(s)	221, 786
EciI	GGCGGA	1 cut(s)	510
Eco57I	CTGAAG	3 cut(s)	260, 810, 1140
Eco81I	CCTNAGG	1 cut(s)	1113
EcoNI	CCTNNNNNAGG	1 cut(s)	1112
EcoRI	GAATTC	1 cut(s)	926
EcoRII	CCWGG	1 cut(s)	697
EcoT22I	ATGCAT	1 cut(s)	606
FaeI	CATG	5 cut(s)	604, 608, 1022, 1034, 1054
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FatI	CATG	5 cut(s)	600, 604, 1018, 1030, 1050
FauNDI	CATATG	1 cut(s)	742
Fnu4HI	GCNGC	4 cut(s)	176, 384, 777, 1035
FokI	GGATG	2 cut(s)	293, 1169
Fsp4HI	GCNGC	4 cut(s)	176, 384, 777, 1035
FspBI	CTAG	2 cut(s)	512, 773
GluI	GCNGC	4 cut(s)	176, 384, 777, 1035
GsaI	CCCAGC	1 cut(s)	288
HaeIII	GGCC	2 cut(s)	359, 655
HapII	CCGG	4 cut(s)	96, 258, 652, 972
Hin1II	CATG	5 cut(s)	604, 608, 1022, 1034, 1054
HincII	GTYRAC	1 cut(s)	125
HindII	GTYRAC	1 cut(s)	125
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	3 cut(s)	249, 451, 818
HpaII	CCGG	4 cut(s)	96, 258, 652, 972
HphI	GGTGA	1 cut(s)	835
Hpy166II	GTNNAC	3 cut(s)	125, 400, 817
Hpy188I	TCNGA	6 cut(s)	25, 40, 355, 803, 810, 994
Hpy188III	TCNNGA	4 cut(s)	96, 278, 710, 903
Hpy8I	GTNNAC	3 cut(s)	125, 400, 817
Hpy99I	CGWCG	3 cut(s)	115, 185, 203
HpyAV	CCTTC	2 cut(s)	432, 1141
HpyCH4IV	ACGT	1 cut(s)	110
HpyF10VI	GCNNNNNNNGC	2 cut(s)	785, 1034
HpyF3I	CTNAG	7 cut(s)	243, 354, 387, 639, 691, 921, 1113
HpySE526I	ACGT	1 cut(s)	110
Hsp92II	CATG	5 cut(s)	604, 608, 1022, 1034, 1054
Kpn2I	TCCGGA	1 cut(s)	95
Kzo9I	GATC	4 cut(s)	160, 288, 871, 994
LguI	GCTCTTC	1 cut(s)	786
LmnI	GCTCC	2 cut(s)	468, 701
Lsp1109I	GCAGC	4 cut(s)	187, 370, 763, 1046
LweI	GCATC	7 cut(s)	162, 271, 303, 415, 757, 885, 1087
MaeI	CTAG	2 cut(s)	512, 773
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	1 cut(s)	577
MalI	GATC	4 cut(s)	162, 290, 873, 996
MboI	GATC	4 cut(s)	160, 288, 871, 994
MboII	GAAGA	8 cut(s)	157, 170, 203, 208, 218, 337, 403, 803
MflI	RGATCY	1 cut(s)	288
MhlI	GDGCHC	1 cut(s)	1026
MluCI	AATT	6 cut(s)	27, 33, 339, 536, 663, 926
MlyI	GAGTC	1 cut(s)	812
Mph1103I	ATGCAT	1 cut(s)	606
MroI	TCCGGA	1 cut(s)	95
MseI	TTAA	2 cut(s)	342, 908
MspI	CCGG	4 cut(s)	96, 258, 652, 972
MspR9I	CCNGG	2 cut(s)	699, 972
MvaI	CCWGG	1 cut(s)	699
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	2 cut(s)	785, 1034
NciI	CCSGG	1 cut(s)	972
NdeI	CATATG	1 cut(s)	742
NdeII	GATC	4 cut(s)	160, 288, 871, 994
NlaIII	CATG	5 cut(s)	604, 608, 1022, 1034, 1054
NlaIV	GGNNCC	1 cut(s)	470
NsiI	ATGCAT	1 cut(s)	606
NspI	RCATGY	1 cut(s)	604
NspV	TTCGAA	1 cut(s)	219
PaqCI	CACCTGC	1 cut(s)	305
PciSI	GCTCTTC	1 cut(s)	786
PcsI	WCGNNNNNNNCGW	5 cut(s)	186, 207, 216, 225, 717
PfeI	GAWTC	2 cut(s)	249, 451
PkrI	GCNGC	4 cut(s)	177, 385, 778, 1036
PleI	GAGTC	1 cut(s)	812
PpsI	GAGTC	1 cut(s)	812
PshBI	ATTAAT	1 cut(s)	908
Psp6I	CCWGG	1 cut(s)	697
PspFI	CCCAGC	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	697
PspN4I	GGNNCC	1 cut(s)	470
PsrI	GAACNNNNNNTAC	2 cut(s)	651, 683
PstNI	CAGNNNCTG	1 cut(s)	704
PsuI	RGATCY	1 cut(s)	288
SapI	GCTCTTC	1 cut(s)	786
SaqAI	TTAA	2 cut(s)	342, 908
SatI	GCNGC	4 cut(s)	176, 384, 777, 1035
Sau3AI	GATC	4 cut(s)	160, 288, 871, 994
SchI	GAGTC	1 cut(s)	812
ScrFI	CCNGG	2 cut(s)	699, 972
SduI	GDGCHC	1 cut(s)	1026
SfaNI	GCATC	7 cut(s)	162, 271, 303, 415, 757, 885, 1087
SfcI	CTRYAG	1 cut(s)	672
SfuI	TTCGAA	1 cut(s)	219
Sse9I	AATT	6 cut(s)	27, 33, 339, 536, 663, 926
SsiI	CCGC	1 cut(s)	495
SspMI	CTAG	2 cut(s)	512, 773
StyD4I	CCNGG	2 cut(s)	697, 970
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	5 cut(s)	183, 198, 219, 228, 711
TaqII	GACCGA	1 cut(s)	531
TasI	AATT	6 cut(s)	27, 33, 339, 536, 663, 926
TfiI	GAWTC	2 cut(s)	249, 451
Tru1I	TTAA	2 cut(s)	342, 908
Tru9I	TTAA	2 cut(s)	342, 908
TseI	GCWGC	4 cut(s)	175, 383, 776, 1034
TspDTI	ATGAA	5 cut(s)	9, 164, 219, 498, 976
VspI	ATTAAT	1 cut(s)	908
XagI	CCTNNNNNAGG	1 cut(s)	1112
XapI	RAATTY	4 cut(s)	27, 33, 536, 926
XceI	RCATGY	1 cut(s)	604
XspI	CTAG	2 cut(s)	512, 773
Zsp2I	ATGCAT	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.