Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004198

Physical Location & Seq

Genomic Coordinates Reverse (-)

6295375 .. 6298811

Gene Structure 3437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00338100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGAAAGCCGAAGATCAAAGCCAGATGCAGCTCATCGAACGAGAAGTCATCGACGATGAAGACGACCTCTTCGAAGTGATCGATAAGTTGATTGCTCAGGGAATCAATGCCGGAGATGTTAAGAAGCTTCAGGACGCAGGGATCTACACCTGCAATGGTTTGATGATGCACACCAAGAAGAACTTGACCGGAATTAAAGGCTTATCTGAGGCCAAAGTTGATAAGATTTGTGAAGCTGCTGAGAAGATAGTGAACTTTGGATATATTACAGGGAGTGATGCTCTAACCAGAAGGAAGTCTGTGATTCGCATTACAACTGGGAGCCAAGCACTGGATGAACTGTTAGGCGGTGGGGTTGAAACTCTAGCAATCACAGAAGCCTTTGGGGAATTTAGGTCTGGGAAAACACAGCTTGCACACACACTCTGCGTAACTACACAGCTTCCTACTAACATGCATGGAGGGAATGGAAAGGTTGCTTACATTGATACTGAGGGAACTTTCCGGCCTGAACGAATAATACCTATAGCTGAAAGATTCGGCTTGGACCCAGGAGCTGTCCTCGATAATATTGTTTATGCTCGTGCTTTTACATATGAGCATCAGTATAATCTGCTTCTTGGTCTAGCTGCAAAAATGGCTGAAGAGCCATTCAGACTTCTGATTGTGGACTCAGTGATTGCTCTATTTCGTGTTGATTTTACTGGGAGAGGAGAGCTTGCAGATCGCCAGCAAAAACTTGCACAGATGCTTTCCCGATTAATAAAGATTGCTGAGGAATTCAATGTCGCTGTCTATATGACCAACCAAGTGATAGCTGACCCCGGTGGTGGAGTGTTCATATCTGATCCAAAGAAACCAGCAGGAGGTCATGTGCTCGCCCATGCAGCAACCATAAGGCTCATGTTTAGAAAAGGCAAAGGGGAACAGCGTGTCTGCAAGGTGTTTGATGCCCCAAACCTGCCTGAGGCTGAAGCAATATCCTTCTCATTTGCTTTATACTTTATGACTTTTATCATTACCTGCACCATCCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000228 GO:0000280 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070192 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Rad51

Protein Analysis

345

Amino Acids

37.9

Weight (kDa)

5.65

Isoelectric Point (pI)

24.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	97 - 327	3.1e-117	Rad51
RecA_N	PF00154	98 - 306	1.3e-10	RecA N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22880 AT3G22880
fragaria_vesca	FvH4_4g03620 FvH4_4g03620 FvH4_4g03740 FvH4_4g03740 FvH4_4g03740
malus_domestica	MD16G1200300.v1.1
prunus_persica	Prupe.1G022500_v2.0.a1 Prupe.1G022500_v2.0.a1
pyrus_communis	pycom16g16950
rosa_chinensis	RchiOBHm_Chr4g0392991 RchiOBHm_Chr4g0393441 RchiOBHm_Chr4g0393481
rosa_laevigata	RLG00000009753 RLG00000009756 RLG00000009776 RLG00000010122
rosa_multiflora	Rmu_sc0008339.1_g000015 Rmu_sc0008931.1_g000008 Rmu_sc0012965.1_g000002
rosa_roxburghii	Rroxscaffold_5G00338100 Rroxscaffold_5G00338400
rosa_rugosa	Rorug03G0309300 Rorug03G0310500 Rorug04G0001200 Rorug04G0001300 Rorug04G0001700 Rorug04G0003100
rosa_samantha	Rh4CG016900
rosa_wichuraiana	Rw4G003560 Rw4G003710 Rw4G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	158
Acc36I	ACCTGC	3 cut(s)	158, 969, 1031
AccB7I	CCANNNNNTGG	1 cut(s)	331
AciI	CCGC	1 cut(s)	348
AclWI	GGATC	2 cut(s)	149, 842
AcsI	RAATTY	2 cut(s)	389, 779
AcuI	CTGAAG	3 cut(s)	113, 663, 993
AfiI	CCNNNNNNNGG	4 cut(s)	331, 830, 866, 967
AgsI	TTSAA	2 cut(s)	359, 784
AjnI	CCWGG	1 cut(s)	550
Alw21I	GWGCWC	1 cut(s)	879
AlwI	GGATC	2 cut(s)	149, 842
AlwNI	CAGNNNCTG	1 cut(s)	557
AoxI	GGCC	2 cut(s)	210, 506
ApeKI	GCWGC	4 cut(s)	28, 236, 629, 887
ApoI	RAATTY	2 cut(s)	389, 779
ArsI	GACNNNNNNTTYG	4 cut(s)	30, 53, 62, 85
AseI	ATTAAT	1 cut(s)	761
AspS9I	GGNCC	1 cut(s)	547
AsuC2I	CCSGG	1 cut(s)	825
AsuII	TTCGAA	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	547
AxyI	CCTNAGG	1 cut(s)	966
BauI	CACGAG	1 cut(s)	582
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	879
BbvCI	CCTCAGC	1 cut(s)	774
BbvI	GCAGC	4 cut(s)	40, 223, 616, 899
BccI	CCATC	1 cut(s)	1037
BciT130I	CCWGG	1 cut(s)	552
BcnI	CCSGG	1 cut(s)	825
BfaI	CTAG	2 cut(s)	365, 626
BfmI	CTRYAG	1 cut(s)	525
BfuAI	ACCTGC	3 cut(s)	158, 969, 1031
BisI	GCNGC	4 cut(s)	29, 237, 630, 888
BlsI	GCNGC	4 cut(s)	30, 238, 631, 889
Bme1390I	CCNGG	2 cut(s)	552, 825
Bme18I	GGWCC	1 cut(s)	547
BmgT120I	GGNCC	1 cut(s)	547
BmiI	GGNNCC	2 cut(s)	323, 549
BmrFI	CCNGG	2 cut(s)	552, 825
BmrI	ACTGGG	2 cut(s)	327, 714
BmsI	GCATC	6 cut(s)	15, 156, 268, 610, 738, 940
BmuI	ACTGGG	2 cut(s)	327, 714
BpiI	GAAGAC	1 cut(s)	66
BplI	GAGNNNNNCTC	4 cut(s)	265, 297, 546, 578
Bpu10I	CCTNAGC	2 cut(s)	96, 774
Bpu14I	TTCGAA	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	825
Bsa29I	ATCGAT	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	550, 823
BsaWI	WCCGGW	1 cut(s)	188
BsaXI	ACNNNNNCTCC	2 cut(s)	858, 888
Bsc4I	CCNNNNNNNGG	4 cut(s)	331, 830, 866, 967
Bse1I	ACTGG	3 cut(s)	322, 336, 709
Bse21I	CCTNAGG	1 cut(s)	966
Bse3DI	GCAATG	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	552
BseCI	ATCGAT	1 cut(s)	81
BseDI	CCNNGG	2 cut(s)	550, 823
BseGI	GGATG	2 cut(s)	340, 1029
BseLI	CCNNNNNNNGG	4 cut(s)	331, 830, 866, 967
BseMI	GCAATG	1 cut(s)	160
BseMII	CTCAG	7 cut(s)	110, 198, 231, 483, 687, 765, 957
BseNI	ACTGG	3 cut(s)	322, 336, 709
BseRI	GAGGAG	1 cut(s)	726
BseXI	GCAGC	4 cut(s)	40, 223, 616, 899
BsgI	GTGCAG	1 cut(s)	1009
BshFI	GGCC	2 cut(s)	212, 508
BshVI	ATCGAT	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	879
BsiSI	CCGG	4 cut(s)	111, 189, 505, 825
BslI	CCNNNNNNNGG	4 cut(s)	331, 830, 866, 967
BsnI	GGCC	2 cut(s)	212, 508
Bsp119I	TTCGAA	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	879
Bsp143I	GATC	5 cut(s)	13, 78, 141, 724, 847
BspACI	CCGC	1 cut(s)	348
BspANI	GGCC	2 cut(s)	212, 508
BspCNI	CTCAG	7 cut(s)	109, 199, 232, 484, 686, 766, 958
BspDI	ATCGAT	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	323, 549
BspMI	ACCTGC	3 cut(s)	158, 969, 1031
BspPI	GGATC	2 cut(s)	149, 842
BspQI	GCTCTTC	1 cut(s)	639
BspT104I	TTCGAA	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	160
BsrI	ACTGG	3 cut(s)	322, 336, 709
BssECI	CCNNGG	2 cut(s)	550, 823
BssMI	GATC	5 cut(s)	13, 78, 141, 724, 847
BssSI	CACGAG	1 cut(s)	582
Bst2BI	CACGAG	1 cut(s)	582
Bst2UI	CCWGG	1 cut(s)	552
Bst4CI	ACNGT	1 cut(s)	342
Bst6I	CTCTTC	2 cut(s)	74, 639
BstBI	TTCGAA	1 cut(s)	72
BstC8I	GCNNGC	4 cut(s)	414, 720, 731, 879
BstDEI	CTNAG	7 cut(s)	96, 207, 240, 492, 673, 774, 966
BstENI	CCTNNNNNAGG	1 cut(s)	965
BstF5I	GGATG	2 cut(s)	340, 1029
BstKTI	GATC	5 cut(s)	16, 81, 144, 727, 850
BstMBI	GATC	5 cut(s)	13, 78, 141, 724, 847
BstMWI	GCNNNNNNNGC	2 cut(s)	638, 887
BstNI	CCWGG	1 cut(s)	552
BstNSI	RCATGY	1 cut(s)	457
BstSCI	CCNGG	2 cut(s)	550, 823
BstSFI	CTRYAG	1 cut(s)	525
BstV1I	GCAGC	4 cut(s)	40, 223, 616, 899
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	1 cut(s)	141
BstYI	RGATCY	1 cut(s)	141
Bsu15I	ATCGAT	1 cut(s)	81
Bsu36I	CCTNAGG	1 cut(s)	966
BsuRI	GGCC	2 cut(s)	212, 508
BsuTUI	ATCGAT	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	340, 1029
BtsIMutI	CAGTG	2 cut(s)	329, 681
BveI	ACCTGC	3 cut(s)	158, 969, 1031
Cac8I	GCNNGC	4 cut(s)	414, 720, 731, 879
CaiI	CAGNNNCTG	1 cut(s)	557
Cfr13I	GGNCC	1 cut(s)	547
ClaI	ATCGAT	1 cut(s)	81
CseI	GACGC	1 cut(s)	143
CviAII	CATG	5 cut(s)	454, 458, 872, 884, 904
DdeI	CTNAG	7 cut(s)	96, 207, 240, 492, 673, 774, 966
DpnI	GATC	5 cut(s)	15, 80, 143, 726, 849
DpnII	GATC	5 cut(s)	13, 78, 141, 724, 847
Eam1104I	CTCTTC	2 cut(s)	74, 639
EarI	CTCTTC	2 cut(s)	74, 639
Eco47I	GGWCC	1 cut(s)	547
Eco57I	CTGAAG	3 cut(s)	113, 663, 993
Eco81I	CCTNAGG	1 cut(s)	966
EcoNI	CCTNNNNNAGG	1 cut(s)	965
EcoRI	GAATTC	1 cut(s)	779
EcoRII	CCWGG	1 cut(s)	550
EcoT22I	ATGCAT	1 cut(s)	459
FaeI	CATG	5 cut(s)	457, 461, 875, 887, 907
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FatI	CATG	5 cut(s)	453, 457, 871, 883, 903
FauNDI	CATATG	1 cut(s)	595
Fnu4HI	GCNGC	4 cut(s)	29, 237, 630, 888
FokI	GGATG	2 cut(s)	347, 1016
Fsp4HI	GCNGC	4 cut(s)	29, 237, 630, 888
FspBI	CTAG	2 cut(s)	365, 626
GluI	GCNGC	4 cut(s)	29, 237, 630, 888
HaeIII	GGCC	2 cut(s)	212, 508
HapII	CCGG	4 cut(s)	111, 189, 505, 825
HgaI	GACGC	1 cut(s)	143
Hin1II	CATG	5 cut(s)	457, 461, 875, 887, 907
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	4 cut(s)	102, 304, 537, 671
HpaII	CCGG	4 cut(s)	111, 189, 505, 825
Hpy166II	GTNNAC	2 cut(s)	253, 670
Hpy188I	TCNGA	4 cut(s)	208, 656, 663, 847
Hpy188III	TCNNGA	2 cut(s)	131, 756
Hpy8I	GTNNAC	2 cut(s)	253, 670
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	285, 994
HpyCH4III	ACNGT	1 cut(s)	342
HpyF10VI	GCNNNNNNNGC	2 cut(s)	638, 887
HpyF3I	CTNAG	7 cut(s)	96, 207, 240, 492, 673, 774, 966
Hsp92II	CATG	5 cut(s)	457, 461, 875, 887, 907
Kzo9I	GATC	5 cut(s)	13, 78, 141, 724, 847
LguI	GCTCTTC	1 cut(s)	639
LmnI	GCTCC	2 cut(s)	321, 554
Lsp1109I	GCAGC	4 cut(s)	40, 223, 616, 899
LweI	GCATC	6 cut(s)	15, 156, 268, 610, 738, 940
MaeI	CTAG	2 cut(s)	365, 626
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	5 cut(s)	15, 80, 143, 726, 849
MboI	GATC	5 cut(s)	13, 78, 141, 724, 847
MboII	GAAGA	6 cut(s)	23, 61, 71, 190, 256, 656
MflI	RGATCY	1 cut(s)	141
MhlI	GDGCHC	1 cut(s)	879
MluCI	AATT	3 cut(s)	192, 389, 779
MlyI	GAGTC	1 cut(s)	665
MnlI	CCTC	9 cut(s)	77, 202, 455, 487, 572, 704, 769, 860, 961
Mph1103I	ATGCAT	1 cut(s)	459
MseI	TTAA	3 cut(s)	120, 195, 761
MspI	CCGG	4 cut(s)	111, 189, 505, 825
MspR9I	CCNGG	2 cut(s)	552, 825
MvaI	CCWGG	1 cut(s)	552
MwoI	GCNNNNNNNGC	2 cut(s)	638, 887
NciI	CCSGG	1 cut(s)	825
NdeI	CATATG	1 cut(s)	595
NdeII	GATC	5 cut(s)	13, 78, 141, 724, 847
NlaIII	CATG	5 cut(s)	457, 461, 875, 887, 907
NlaIV	GGNNCC	2 cut(s)	323, 549
NsiI	ATGCAT	1 cut(s)	459
NspI	RCATGY	1 cut(s)	457
NspV	TTCGAA	1 cut(s)	72
PaqCI	CACCTGC	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	639
PcsI	WCGNNNNNNNCGW	3 cut(s)	60, 69, 78
PfeI	GAWTC	3 cut(s)	102, 304, 537
PflMI	CCANNNNNTGG	1 cut(s)	331
PkrI	GCNGC	4 cut(s)	30, 238, 631, 889
PleI	GAGTC	1 cut(s)	665
PpsI	GAGTC	1 cut(s)	665
PshBI	ATTAAT	1 cut(s)	761
Psp6I	CCWGG	1 cut(s)	550
PspGI	CCWGG	1 cut(s)	550
PspN4I	GGNNCC	2 cut(s)	323, 549
PspPI	GGNCC	1 cut(s)	547
PsrI	GAACNNNNNNTAC	2 cut(s)	504, 536
PstNI	CAGNNNCTG	1 cut(s)	557
PsuI	RGATCY	1 cut(s)	141
SapI	GCTCTTC	1 cut(s)	639
SaqAI	TTAA	3 cut(s)	120, 195, 761
SatI	GCNGC	4 cut(s)	29, 237, 630, 888
Sau3AI	GATC	5 cut(s)	13, 78, 141, 724, 847
Sau96I	GGNCC	1 cut(s)	547
SchI	GAGTC	1 cut(s)	665
ScrFI	CCNGG	2 cut(s)	552, 825
SduI	GDGCHC	1 cut(s)	879
SfaNI	GCATC	6 cut(s)	15, 156, 268, 610, 738, 940
SfcI	CTRYAG	1 cut(s)	525
SfuI	TTCGAA	1 cut(s)	72
SinI	GGWCC	1 cut(s)	547
Sse9I	AATT	3 cut(s)	192, 389, 779
SsiI	CCGC	1 cut(s)	348
SspI	AATATT	1 cut(s)	571
SspMI	CTAG	2 cut(s)	365, 626
StyD4I	CCNGG	2 cut(s)	550, 823
TaaI	ACNGT	1 cut(s)	342
TaqI	TCGA	5 cut(s)	36, 51, 72, 81, 564
TasI	AATT	3 cut(s)	192, 389, 779
TfiI	GAWTC	3 cut(s)	102, 304, 537
Tru1I	TTAA	3 cut(s)	120, 195, 761
Tru9I	TTAA	3 cut(s)	120, 195, 761
TscAI	CASTG	2 cut(s)	336, 681
TseI	GCWGC	4 cut(s)	28, 236, 629, 887
TspDTI	ATGAA	4 cut(s)	17, 72, 351, 829
TspRI	CASTG	2 cut(s)	336, 681
Van91I	CCANNNNNTGG	1 cut(s)	331
VpaK11BI	GGWCC	1 cut(s)	547
VspI	ATTAAT	1 cut(s)	761
XagI	CCTNNNNNAGG	1 cut(s)	965
XapI	RAATTY	2 cut(s)	389, 779
XceI	RCATGY	1 cut(s)	457
XspI	CTAG	2 cut(s)	365, 626
Zsp2I	ATGCAT	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.