Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004198

Physical Location & Seq

Genomic Coordinates Forward (+)

57609003 .. 57612081

Gene Structure 3079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009776

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGAAAGCCGAAGATCAAAGCCAGATGCAGCTCATCGAACGCGAAGACATCGACGACGAAGACGACCTCTTCGAAGTGATCGATAAGCGTAAGCCCTCACAACCGAACTTTGGATATATTACTGGGAGTGATGCTCTAACCAGAAGGAAGTCTGTGATTCGCATTACAACTGGGAGCCAAGCACTTGATGAACTATTAGGCGGAGGGGTTGAAACTCTAGCAATCACAGAAGCCTTTGGGGAATTTAGGTCTGGGAAAACACAGCTTGCACACACACTCTGTGTAACTACACAGCTTCCTACTAACATGCATGGAGGGAATGGAAAGGTTGCTTACATTGATACTGAGGGAACTTTCCGGCCTGAACGAATTATACCTATAGCTGAAAGATTTGGCTTGGACCCAGGAGCTGTTCTCGACAATATCGTTTATGCTCGTGCTTATACATATGAGCATCAGTATAATCTGCTTCTTGGTCTTGCTGCAAAAATGGCTGAAGAGCCATTCAGACTTCTGGTTGTGGACTCGCAAAAACTTGCACAGATGCTTTCCCGATTAATAAAGATTGCTGAGGAATTCAATGTCGCTGTCTATATGACCAACCAAGTGATAGCTGACCCCGGTGGTGGAGTGTTCATATCTGATCCAAAGAAACCAGCAGGAGGTCATGTGCTCGCCCATGCAGCAACCATAAGGCTCATGTTTAGAAAAGGCAAAGGGGAACAGCGTGTCTGCAAGGTGTTTGATGCCCCAAACCTGCCTGAGGCTGAAGCAATATCCTTCTCATTTGCTCTGTTGATATACTCATATGACTTTTATCATTACCTGCATCATCCTATAACTGAGACTGCATGTATCATGACTAGGTTAGGCCTATGTGTGTTGTTATTCTTGACAGAAACGAACGTTTTCCAGATAACTGCAGGAGGCATTGCAGATGCAAAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000228 GO:0000280 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070192 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Rad51

Protein Analysis

317

Amino Acids

34.97

Weight (kDa)

5.35

Isoelectric Point (pI)

34.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	48 - 176	9.6e-63	Rad51
Rad51	PF08423	177 - 259	3.1e-34	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22880 AT3G22880
fragaria_vesca	FvH4_4g03620 FvH4_4g03620 FvH4_4g03740 FvH4_4g03740 FvH4_4g03740
malus_domestica	MD16G1200300.v1.1
prunus_persica	Prupe.1G022500_v2.0.a1 Prupe.1G022500_v2.0.a1
pyrus_communis	pycom16g16950
rosa_chinensis	RchiOBHm_Chr4g0392991 RchiOBHm_Chr4g0393441 RchiOBHm_Chr4g0393481
rosa_laevigata	RLG00000009753 RLG00000009756 RLG00000009776 RLG00000010122
rosa_multiflora	Rmu_sc0008339.1_g000015 Rmu_sc0008931.1_g000008 Rmu_sc0012965.1_g000002
rosa_roxburghii	Rroxscaffold_5G00338100 Rroxscaffold_5G00338400
rosa_rugosa	Rorug03G0309300 Rorug03G0310500 Rorug04G0001200 Rorug04G0001300 Rorug04G0001700 Rorug04G0003100
rosa_samantha	Rh4CG016900
rosa_wichuraiana	Rw4G003560 Rw4G003710 Rw4G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	765, 834
AccII	CGCG	1 cut(s)	42
AciI	CCGC	1 cut(s)	201
AclI	AACGTT	1 cut(s)	906
AclWI	GGATC	1 cut(s)	638
AcsI	RAATTY	2 cut(s)	242, 575
AcuI	CTGAAG	2 cut(s)	516, 789
AdeI	CACNNNGTG	1 cut(s)	281
AfiI	CCNNNNNNNGG	4 cut(s)	110, 626, 662, 763
AgsI	TTSAA	2 cut(s)	212, 580
AjnI	CCWGG	1 cut(s)	403
AluBI	AGCT	6 cut(s)	31, 265, 295, 383, 410, 614
AluI	AGCT	6 cut(s)	31, 265, 295, 383, 410, 614
Alw21I	GWGCWC	1 cut(s)	675
Alw26I	GTCTC	1 cut(s)	839
AlwI	GGATC	1 cut(s)	638
AlwNI	CAGNNNCTG	1 cut(s)	410
AoxI	GGCC	2 cut(s)	359, 871
ApeKI	GCWGC	3 cut(s)	28, 482, 683
ApoI	RAATTY	2 cut(s)	242, 575
ArsI	GACNNNNNNTTYG	2 cut(s)	53, 85
AseI	ATTAAT	1 cut(s)	557
Asp700I	GAANNNNTTC	1 cut(s)	908
AspS9I	GGNCC	1 cut(s)	400
AsuC2I	CCSGG	1 cut(s)	621
AsuII	TTCGAA	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	400
AxyI	CCTNAGG	1 cut(s)	762
BauI	CACGAG	1 cut(s)	435
BbsI	GAAGAC	2 cut(s)	51, 66
Bbv12I	GWGCWC	1 cut(s)	675
BbvCI	CCTCAGC	1 cut(s)	570
BbvI	GCAGC	3 cut(s)	40, 469, 695
BciT130I	CCWGG	1 cut(s)	405
BcnI	CCSGG	1 cut(s)	621
BcoDI	GTCTC	1 cut(s)	839
BfaI	CTAG	2 cut(s)	218, 864
BfmI	CTRYAG	2 cut(s)	378, 921
BfuAI	ACCTGC	2 cut(s)	765, 834
BisI	GCNGC	3 cut(s)	29, 483, 684
BlsI	GCNGC	3 cut(s)	30, 484, 685
Bme1390I	CCNGG	2 cut(s)	405, 621
Bme18I	GGWCC	1 cut(s)	400
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	2 cut(s)	176, 402
BmrFI	CCNGG	2 cut(s)	405, 621
BmrI	ACTGGG	2 cut(s)	132, 180
BmsI	GCATC	7 cut(s)	15, 121, 463, 534, 736, 838, 928
BmuI	ACTGGG	2 cut(s)	132, 180
BpiI	GAAGAC	2 cut(s)	51, 66
BplI	GAGNNNNNCTC	4 cut(s)	118, 150, 399, 431
Bpu10I	CCTNAGC	1 cut(s)	570
Bpu14I	TTCGAA	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	621
Bsa29I	ATCGAT	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	403, 619
BsaXI	ACNNNNNCTCC	2 cut(s)	654, 684
Bsc4I	CCNNNNNNNGG	4 cut(s)	110, 626, 662, 763
Bse1I	ACTGG	2 cut(s)	127, 175
Bse21I	CCTNAGG	1 cut(s)	762
Bse3DI	GCAATG	1 cut(s)	930
BseBI	CCWGG	1 cut(s)	405
BseCI	ATCGAT	1 cut(s)	81
BseDI	CCNNGG	2 cut(s)	403, 619
BseGI	GGATG	1 cut(s)	832
BseLI	CCNNNNNNNGG	4 cut(s)	110, 626, 662, 763
BseMI	GCAATG	1 cut(s)	930
BseMII	CTCAG	4 cut(s)	336, 561, 753, 834
BseNI	ACTGG	2 cut(s)	127, 175
BseXI	GCAGC	3 cut(s)	40, 469, 695
Bsh1236I	CGCG	1 cut(s)	42
BshFI	GGCC	2 cut(s)	361, 873
BshVI	ATCGAT	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	675
BsiSI	CCGG	2 cut(s)	358, 621
BslI	CCNNNNNNNGG	4 cut(s)	110, 626, 662, 763
BsmAI	GTCTC	1 cut(s)	839
BsnI	GGCC	2 cut(s)	361, 873
Bsp119I	TTCGAA	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	675
Bsp143I	GATC	3 cut(s)	13, 78, 643
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	2 cut(s)	361, 873
BspCNI	CTCAG	4 cut(s)	337, 562, 754, 835
BspDI	ATCGAT	1 cut(s)	81
BspFNI	CGCG	1 cut(s)	42
BspHI	TCATGA	1 cut(s)	858
BspLI	GGNNCC	2 cut(s)	176, 402
BspMAI	CTGCAG	1 cut(s)	925
BspMI	ACCTGC	2 cut(s)	765, 834
BspPI	GGATC	1 cut(s)	638
BspQI	GCTCTTC	1 cut(s)	492
BspT104I	TTCGAA	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	930
BsrI	ACTGG	2 cut(s)	127, 175
BssECI	CCNNGG	2 cut(s)	403, 619
BssMI	GATC	3 cut(s)	13, 78, 643
BssSI	CACGAG	1 cut(s)	435
Bst2BI	CACGAG	1 cut(s)	435
Bst2UI	CCWGG	1 cut(s)	405
Bst6I	CTCTTC	2 cut(s)	74, 492
BstBI	TTCGAA	1 cut(s)	72
BstC8I	GCNNGC	2 cut(s)	267, 675
BstDEI	CTNAG	4 cut(s)	345, 570, 762, 843
BstENI	CCTNNNNNAGG	1 cut(s)	761
BstF5I	GGATG	1 cut(s)	832
BstFNI	CGCG	1 cut(s)	42
BstKTI	GATC	3 cut(s)	16, 81, 646
BstMAI	GTCTC	1 cut(s)	839
BstMBI	GATC	3 cut(s)	13, 78, 643
BstMWI	GCNNNNNNNGC	2 cut(s)	491, 683
BstNI	CCWGG	1 cut(s)	405
BstNSI	RCATGY	2 cut(s)	310, 855
BstSCI	CCNGG	2 cut(s)	403, 619
BstSFI	CTRYAG	2 cut(s)	378, 921
BstUI	CGCG	1 cut(s)	42
BstV1I	GCAGC	3 cut(s)	40, 469, 695
BstV2I	GAAGAC	2 cut(s)	51, 66
Bsu15I	ATCGAT	1 cut(s)	81
Bsu36I	CCTNAGG	1 cut(s)	762
BsuRI	GGCC	2 cut(s)	361, 873
BsuTUI	ATCGAT	1 cut(s)	81
BtsCI	GGATG	1 cut(s)	832
BveI	ACCTGC	2 cut(s)	765, 834
Cac8I	GCNNGC	2 cut(s)	267, 675
CaiI	CAGNNNCTG	1 cut(s)	410
CciI	TCATGA	1 cut(s)	858
Cfr13I	GGNCC	1 cut(s)	400
ClaI	ATCGAT	1 cut(s)	81
CviAII	CATG	7 cut(s)	307, 311, 668, 680, 700, 852, 859
DdeI	CTNAG	4 cut(s)	345, 570, 762, 843
DpnI	GATC	3 cut(s)	15, 80, 645
DpnII	GATC	3 cut(s)	13, 78, 643
DraIII	CACNNNGTG	1 cut(s)	281
Eam1104I	CTCTTC	2 cut(s)	74, 492
EarI	CTCTTC	2 cut(s)	74, 492
EciI	GGCGGA	1 cut(s)	216
Eco147I	AGGCCT	1 cut(s)	873
Eco47I	GGWCC	1 cut(s)	400
Eco57I	CTGAAG	2 cut(s)	516, 789
Eco81I	CCTNAGG	1 cut(s)	762
EcoNI	CCTNNNNNAGG	1 cut(s)	761
EcoRI	GAATTC	1 cut(s)	575
EcoRII	CCWGG	1 cut(s)	403
EcoT22I	ATGCAT	1 cut(s)	312
FaeI	CATG	7 cut(s)	310, 314, 671, 683, 703, 855, 862
FatI	CATG	7 cut(s)	306, 310, 667, 679, 699, 851, 858
FauNDI	CATATG	2 cut(s)	448, 808
Fnu4HI	GCNGC	3 cut(s)	29, 483, 684
FokI	GGATG	1 cut(s)	819
Fsp4HI	GCNGC	3 cut(s)	29, 483, 684
FspBI	CTAG	2 cut(s)	218, 864
GluI	GCNGC	3 cut(s)	29, 483, 684
HaeIII	GGCC	2 cut(s)	361, 873
HapII	CCGG	2 cut(s)	358, 621
Hin1II	CATG	7 cut(s)	310, 314, 671, 683, 703, 855, 862
HinfI	GANTC	2 cut(s)	157, 524
HpaII	CCGG	2 cut(s)	358, 621
Hpy166II	GTNNAC	1 cut(s)	523
Hpy188I	TCNGA	2 cut(s)	509, 643
Hpy188III	TCNNGA	5 cut(s)	416, 552, 859, 892, 913
Hpy8I	GTNNAC	1 cut(s)	523
Hpy99I	CGWCG	2 cut(s)	56, 59
HpyAV	CCTTC	2 cut(s)	138, 790
HpyCH4IV	ACGT	1 cut(s)	906
HpyF10VI	GCNNNNNNNGC	2 cut(s)	491, 683
HpyF3I	CTNAG	4 cut(s)	345, 570, 762, 843
HpySE526I	ACGT	1 cut(s)	906
Hsp92II	CATG	7 cut(s)	310, 314, 671, 683, 703, 855, 862
Kzo9I	GATC	3 cut(s)	13, 78, 643
LguI	GCTCTTC	1 cut(s)	492
LmnI	GCTCC	2 cut(s)	174, 407
Lsp1109I	GCAGC	3 cut(s)	40, 469, 695
LweI	GCATC	7 cut(s)	15, 121, 463, 534, 736, 838, 928
MaeI	CTAG	2 cut(s)	218, 864
MaeII	ACGT	1 cut(s)	906
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	3 cut(s)	15, 80, 645
MboI	GATC	3 cut(s)	13, 78, 643
MboII	GAAGA	5 cut(s)	23, 56, 61, 71, 509
MhlI	GDGCHC	1 cut(s)	675
MluCI	AATT	3 cut(s)	242, 369, 575
MlyI	GAGTC	1 cut(s)	518
MnlI	CCTC	9 cut(s)	77, 106, 197, 308, 340, 565, 656, 757, 920
Mph1103I	ATGCAT	1 cut(s)	312
MroXI	GAANNNNTTC	1 cut(s)	908
MseI	TTAA	1 cut(s)	557
MspI	CCGG	2 cut(s)	358, 621
MspR9I	CCNGG	2 cut(s)	405, 621
MvaI	CCWGG	1 cut(s)	405
MvnI	CGCG	1 cut(s)	42
MwoI	GCNNNNNNNGC	2 cut(s)	491, 683
NciI	CCSGG	1 cut(s)	621
NdeI	CATATG	2 cut(s)	448, 808
NdeII	GATC	3 cut(s)	13, 78, 643
NlaIII	CATG	7 cut(s)	310, 314, 671, 683, 703, 855, 862
NlaIV	GGNNCC	2 cut(s)	176, 402
NsiI	ATGCAT	1 cut(s)	312
NspI	RCATGY	2 cut(s)	310, 855
NspV	TTCGAA	1 cut(s)	72
PagI	TCATGA	1 cut(s)	858
PceI	AGGCCT	1 cut(s)	873
PciSI	GCTCTTC	1 cut(s)	492
PcsI	WCGNNNNNNNCGW	4 cut(s)	60, 69, 78, 423
PdmI	GAANNNNTTC	1 cut(s)	908
PfeI	GAWTC	1 cut(s)	157
PkrI	GCNGC	3 cut(s)	30, 484, 685
PleI	GAGTC	1 cut(s)	518
PpsI	GAGTC	1 cut(s)	518
PshBI	ATTAAT	1 cut(s)	557
Psp1406I	AACGTT	1 cut(s)	906
Psp6I	CCWGG	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	2 cut(s)	176, 402
PspPI	GGNCC	1 cut(s)	400
PsrI	GAACNNNNNNTAC	2 cut(s)	357, 389
PstI	CTGCAG	1 cut(s)	925
PstNI	CAGNNNCTG	1 cut(s)	410
SapI	GCTCTTC	1 cut(s)	492
SaqAI	TTAA	1 cut(s)	557
SatI	GCNGC	3 cut(s)	29, 483, 684
Sau3AI	GATC	3 cut(s)	13, 78, 643
Sau96I	GGNCC	1 cut(s)	400
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	2 cut(s)	405, 621
SduI	GDGCHC	1 cut(s)	675
SfaNI	GCATC	7 cut(s)	15, 121, 463, 534, 736, 838, 928
SfcI	CTRYAG	2 cut(s)	378, 921
SfuI	TTCGAA	1 cut(s)	72
SinI	GGWCC	1 cut(s)	400
Sse9I	AATT	3 cut(s)	242, 369, 575
SseBI	AGGCCT	1 cut(s)	873
SsiI	CCGC	1 cut(s)	201
SspMI	CTAG	2 cut(s)	218, 864
StuI	AGGCCT	1 cut(s)	873
StyD4I	CCNGG	2 cut(s)	403, 619
TaiI	ACGT	1 cut(s)	909
TaqI	TCGA	5 cut(s)	36, 51, 72, 81, 417
TasI	AATT	3 cut(s)	242, 369, 575
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	1 cut(s)	557
Tru9I	TTAA	1 cut(s)	557
TseI	GCWGC	3 cut(s)	28, 482, 683
TspDTI	ATGAA	3 cut(s)	17, 204, 625
VpaK11BI	GGWCC	1 cut(s)	400
VspI	ATTAAT	1 cut(s)	557
XagI	CCTNNNNNAGG	1 cut(s)	761
XapI	RAATTY	2 cut(s)	242, 575
XceI	RCATGY	2 cut(s)	310, 855
XmnI	GAANNNNTTC	1 cut(s)	908
XspI	CTAG	2 cut(s)	218, 864
Zsp2I	ATGCAT	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.