AT3G23270

regulator of chromosome condensation (RCC1) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006555
Physical Location & Seq
Forward (+)
8316218 .. 8320487
4270 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G23270.1

Sequence Viewer

Length: 3138 bp
ATGGCAGATCCTGCTAGTTGTTATATCTATCACGAGCGTGACGTCGACCAAGCACTTGTCGTATTGAAAAAGGGAACTCAATTACTCAAGTATAGTCGGAAAGGGAAACCTAAATTCCGCGCATTCAGGCTTTCTCCGGATGAAAAAACGTTGATTTGGTTCTCGCGTGGAGAAGAAAAAGGTTTGAAGTTATTTGAAGTTTCTCGTATTGTCCCGGGACAAAGAACTAGATTTCTACGTCCAGAGAAAGATCACTTATCATTTTCACTTCTATATAACAACAGAGAAAGGTCACTTGATCTGATTTGTAAGGACAAAGCTGAGACAGAGGTGTGGTTTGCTGCCCTTAAATTTTTGATTGAAAAAAGTCGTAATCGACGCGCCAGAAGTGAAATCCCTGAGATACATGATAGTGACACTTTCTCTGTTGGTCGTCAATCTATAGACTTTGTCCCAAGCAATATTCCACGAGGTAGAACATCAATTGACTTAGGCTATCAGAACAATTCAGATGTGGGATATGAACGTGGAAACATGTTAAGACCAAGTACAGATGGTTTTCGGATCAGTGTCTCAAGCACACCAAGTTGTTCAAGTGGAGGATCTGGTCCGGATGATATTGAATCATTAGGTGATGTTTACGTTTGGGGTGAAGTTTGGACTGAAGGGATATTACCAGACGGAACTGCTAGCAATGAAACTGTGAAAACAGATGTACTAACTCCAAGACCTTTGGAATCAAATGTTGTTCTCGATGTTCACCAGATTGTTTGCGGTGTAAGGCACGTTGCGCTTGTGACAAGACAAGGAGAGGTTTTTACTTGGGGAGAAGAAGTTGGAGGAAGGCTTGGACATGGTATACAAGTAGATATTAGTCGTCCAAAACTCGTTGAGTTTCTTGCTCTAACCAACATAGACTTTGTTGCATGTGGAGAATATCATACTTGTGTTGTATCTACCTCTGGTGACTTGTTTTCATGGGGAGATGGAATCCATAATGTTGGGCTATTAGGACATGGTAGTGATATAAGCCATTGGATACCTAAAAGAGTCTCTGGTCCTTTAGAAGGTCTTCAAGTACTCTCAGTTGCTTGTGGAACATGGCATTCAGCTTTAGCTACTGCGAACGGGAAGCTATTCACGTTTGGTGATGGAGCGTTTGGCGTTTTAGGTCATGGAAACAGAGAAAGTGTTTCATATCCTAAGGAAGTACAATCATTAAACGGTTTGAAAACGGTGAAAGTAGCTTGTAGTATTTGGCATACCGCAGCGATTGTCGAGGTTATGGGTCAAACCGCTACGAGTATGTCATCTAGGAAGTTGTTTACTTGGGGTGATGGTGACAAAAACAGGTTGGGACACGGAAACAAAGAGACTTACTTGCTTCCAACTTGTGTATCTTCTCTTATTGACTACAACTTTCATAAGATTGCTTGTGGGCATACATTTACCGTCGCACTCACAACTTCTGGACATGTTTTTACTATGGGTGGTACCGCTCATGGTCAGCTAGGTAACTCAATCTCTGATGGTAAATTACCATGCTTGGTTCAAGATAGATTAGTCGGAGAATTCGTGGAAGAAATCGCGTGCGGAGCTCACCATGTCGCGGTTTTGACATCTAGAAGTGAAGTCTTCACGTGGGGAAAAGGTGCTAATGGAAGATTAGGACATGGAGATACAGAGGATAAAAGAACACCAACTTTGGTTGAAGCCTTGAGAGATAGGCATGTGAAGAGTTTATCTTGCGGCTCAAACTTTACGTCAAGTATATGTATACATAAGTGGGTATCCGGAGCAGATCAGTCAATCTGCTCCGGATGTCGTCAAGCATTCGGATTTACCCGGAAGAGGCATAACTGTTATAACTGTGGTTTAGTCCATTGTCATGCTTGTAGCTCAAAGAAAGCTTTAAAAGCAGCTTTAGCTCCAACTCCGGGGAAACCACATCGCGTATGTGATGCTTGTTACAGCAAACTTAAAGCCGCGGAGTCTGGTTATAGTTCTAATGTAAACAGGAATGTTGCAACTCCAGGACGGTCAATAGATGGATCAGTAAGAACTGATAGAGAAACAACAAGGTCATCGAAAGTTCTCTTGTCCGCAAATAAAAATTCAGTCATGTCATCATCAAGGCCTGGATTCACACCTGAGTCTTCTAATGCTCGTGCCTCGCAAGTTCCATCTCTCCAACAACTTAAAGACATTGCATTCCCAAGTTCGCTTAGCGCCATTCAAAATGCTTTCAAACCTGTTGTTGCTCCAACTACTACTCCACCACGTACACTTGTTATTGGACCATCATCTCCATCACCGCCTCCACCTCCAAGATCATCCTCTCCTTATGCAAGAAGACCGAGCCCTCCACGCACTTCTGGATTTTCAAGAAGTGTTATCGATAGTTTAAGGAAGACTAACGAAGTTATGAACCAAGAAATGACAAAACTGCATAGTCAGCAGAGATGTAATAATCAAGGTACAGAGATTGAAAGATTTCAAAAAGCAGCTAAAGACGCTTCTGAATTAGCTGCAAGACAATCTTCAAAACATAAAGCAGCAACAGAAGCACTCAAGTCTGTTGCAGAACAGTTAAAAGAATTGAAGGAGAAATTACCTCCAGAAGTATCAGAGAGTGAAGCATTTGAATCCATTAACTCTCAAGCTGAAGCTTATCTAAACGCAAACAAAGTATCAGAAACATCTCCACTTACAACTTCGGGACAAGAACAAGAAACATATCAAAAGACAGAGGAACAAGTACCTTCTAACTCAAGTATAACCGAGACATCGAGTTCATCAAGGGCACCAAGTACAGAAGCTTCATCATCAAGAATAAGTGGAAAAGAAAGTAAAGAACAATTTGAGCCTGGTGTTTATGTGACTTATGAGGTAGACATGAATGGTAACAAGATCTTTCGACGAGTTAGATTTAGTAAAAAAAGATTTGATGAGCATCAAGCAGAAGATTGGTGGACCAAAAACAAAGATAGGTTGCTTAAGTGTTATAGTTCAAATTCATCATCATCATCATCATCATCGAATCCAACGGCTTCCGACTCACCTGTTGCTCCACAACCACCGTCTGATCCGTCGGTACCTGAACAGAGCAATGAGAAGGAACCAGATTCTGAAACCTAG

Protein Analysis

1045

Amino Acids

114.19

Weight (kDa)

8.61

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH_12 PF16457 17 - 120 2.8e-08 Pleckstrin homology domain
WD40_RLD PF25390 212 - 588 5.1e-74 RCC1-like domain
RCC1 PF00415 269 - 318 3.9e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 307 - 330 1.1e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 321 - 372 6.7e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 376 - 425 4.1e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 441 - 487 1e-12 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 544 - 588 6.9e-14 Regulator of chromosome condensation (RCC1) repeat
FYVE PF01363 595 - 661 2.2e-15 FYVE zinc finger
BRX_N PF13713 846 - 881 6.6e-13 Transcription factor BRX N-terminal domain
BRX PF08381 948 - 1002 4e-23 Transcription factor regulating root and shoot growth via Pin3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1866
AatII GACGTC 1 cut(s) 45
Acc65I GGTACC 2 cut(s) 1493, 3094
AccB1I GGYRCC 3 cut(s) 1493, 2803, 3094
AccBSI CCGCTC 1 cut(s) 1499
AccI GTMKAC 4 cut(s) 45, 859, 1777, 2892
AccII CGCG 7 cut(s) 120, 166, 381, 1589, 1610, 1953, 1988
AccIII TCCGGA 4 cut(s) 136, 610, 1793, 1817
AclI AACGTT 1 cut(s) 149
AclWI GGATC 5 cut(s) 2, 572, 610, 2059, 3080
AcsI RAATTY 5 cut(s) 113, 350, 1571, 2113, 3013
AcuI CTGAAG 2 cut(s) 684, 2685
AcvI CACGTG 1 cut(s) 1641
AcyI GRCGYC 1 cut(s) 42
AfiI CCNNNNNNNGG 4 cut(s) 1067, 1609, 1851, 1937
AflII CTTAAG 1 cut(s) 2996
AflIII ACRYGT 2 cut(s) 534, 1474
AjnI CCWGG 3 cut(s) 2032, 2137, 2866
AleI CACNNNNGTG 1 cut(s) 36
Alw21I GWGCWC 1 cut(s) 1600
Alw26I GTCTC 5 cut(s) 317, 577, 1057, 1367, 2777
AlwI GGATC 5 cut(s) 2, 572, 610, 2059, 3080
AlwNI CAGNNNCTG 2 cut(s) 11, 3128
Ama87I CYCGRG 1 cut(s) 214
Aor13HI TCCGGA 4 cut(s) 136, 610, 1793, 1817
AoxI GGCC 1 cut(s) 2135
ApeKI GCWGC 6 cut(s) 341, 1268, 1919, 2504, 2528, 2555
ApoI RAATTY 5 cut(s) 113, 350, 1571, 2113, 3013
ArsI GACNNNNNNTTYG 2 cut(s) 1748, 1780
Asp700I GAANNNNTTC 3 cut(s) 1071, 1136, 2493
Asp718I GGTACC 2 cut(s) 1493, 3094
AspLEI GCGC 4 cut(s) 122, 383, 793, 2231
AspS9I GGNCC 4 cut(s) 608, 1058, 2297, 2973
AsuC2I CCSGG 4 cut(s) 215, 216, 1846, 1938
AsuNHI GCTAGC 1 cut(s) 689
AvaI CYCGRG 1 cut(s) 214
AvaII GGWCC 4 cut(s) 608, 1058, 2297, 2973
AxyI CCTNAGG 1 cut(s) 1203
BaeGI GKGCMC 1 cut(s) 2806
BaeI ACNNNNGTAYC 2 cut(s) 1380, 1413
BanI GGYRCC 3 cut(s) 1493, 2803, 3094
BanII GRGCYC 2 cut(s) 1600, 2363
BarI GAAGNNNNNNTAC 4 cut(s) 657, 689, 2803, 2835
BauI CACGAG 3 cut(s) 32, 468, 2166
BbrPI CACGTG 1 cut(s) 1641
BbsI GAAGAC 5 cut(s) 1064, 1627, 2148, 2359, 2417
Bbv12I GWGCWC 1 cut(s) 1600
BbvI GCAGC 6 cut(s) 328, 1280, 1931, 2515, 2516, 2567
BccI CCATC 9 cut(s) 548, 980, 1145, 1331, 1523, 2042, 2191, 2308, 2317
BceAI ACGGC 1 cut(s) 3063
BciT130I CCWGG 3 cut(s) 2034, 2139, 2868
BciVI GTATCC 2 cut(s) 1032, 1801
BcnI CCSGG 4 cut(s) 215, 216, 1846, 1938
BcoDI GTCTC 5 cut(s) 317, 577, 1057, 1367, 2777
BfaI CTAG 7 cut(s) 15, 228, 690, 1314, 1511, 1623, 3136
BfmI CTRYAG 1 cut(s) 441
BfoI RGCGCY 1 cut(s) 2232
BfrI CTTAAG 1 cut(s) 2996
BfuI GTATCC 2 cut(s) 1032, 1801
BglII AGATCT 1 cut(s) 2910
BisI GCNGC 8 cut(s) 342, 1269, 1750, 1920, 1986, 2505, 2529, 2556
BlpI GCTNAGC 1 cut(s) 2225
BlsI GCNGC 8 cut(s) 343, 1270, 1751, 1921, 1987, 2506, 2530, 2557
BmcAI AGTACT 1 cut(s) 1080
Bme1390I CCNGG 7 cut(s) 215, 216, 1846, 1938, 2034, 2139, 2868
Bme18I GGWCC 4 cut(s) 608, 1058, 2297, 2973
BmeT110I CYCGRG 1 cut(s) 214
BmgT120I GGNCC 4 cut(s) 608, 1058, 2297, 2973
BmiI GGNNCC 4 cut(s) 1495, 2805, 3096, 3120
BmrFI CCNGG 7 cut(s) 215, 216, 1846, 1938, 2034, 2139, 2868
BmsI GCATC 2 cut(s) 1951, 2962
BmtI GCTAGC 1 cut(s) 693
BpiI GAAGAC 5 cut(s) 1064, 1627, 2148, 2359, 2417
BpmI CTGGAG 2 cut(s) 2016, 2601
Bpu1102I GCTNAGC 1 cut(s) 2225
BpuEI CTTGAG 6 cut(s) 71, 559, 1738, 2555, 2643, 2755
BpuMI CCSGG 4 cut(s) 215, 216, 1846, 1938
Bsa29I ATCGAT 1 cut(s) 2397
BsaAI YACGTR 2 cut(s) 1641, 2282
BsaBI GATNNNNATC 1 cut(s) 2952
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 3 cut(s) 214, 1937, 1986
BsaWI WCCGGW 4 cut(s) 136, 610, 1793, 1817
BsaXI ACNNNNNCTCC 6 cut(s) 819, 849, 1560, 1590, 2257, 2287
Bsc4I CCNNNNNNNGG 4 cut(s) 1067, 1609, 1851, 1937
Bse21I CCTNAGG 1 cut(s) 1203
Bse3DI GCAATG 3 cut(s) 700, 2205, 3115
Bse8I GATNNNNATC 1 cut(s) 2952
BseAI TCCGGA 4 cut(s) 136, 610, 1793, 1817
BseBI CCWGG 3 cut(s) 2034, 2139, 2868
BseCI ATCGAT 1 cut(s) 2397
BseDI CCNNGG 3 cut(s) 214, 1937, 1986
BseGI GGATG 4 cut(s) 145, 619, 1826, 2333
BseJI GATNNNNATC 1 cut(s) 2952
BseLI CCNNNNNNNGG 4 cut(s) 1067, 1609, 1851, 1937
BseMI GCAATG 3 cut(s) 700, 2205, 3115
BseMII CTCAG 4 cut(s) 312, 390, 1098, 2142
BseSI GKGCMC 1 cut(s) 2806
BseXI GCAGC 6 cut(s) 328, 1280, 1931, 2515, 2516, 2567
Bsh1236I CGCG 7 cut(s) 120, 166, 381, 1589, 1610, 1953, 1988
BshFI GGCC 1 cut(s) 2137
BshNI GGYRCC 3 cut(s) 1493, 2803, 3094
BshVI ATCGAT 1 cut(s) 2397
BsiHKAI GWGCWC 1 cut(s) 1600
BsiHKCI CYCGRG 1 cut(s) 214
BsiSI CCGG 7 cut(s) 137, 215, 611, 1794, 1818, 1846, 1937
BslFI GGGAC 5 cut(s) 197, 231, 437, 1371, 2733
BslI CCNNNNNNNGG 4 cut(s) 1067, 1609, 1851, 1937
BsmAI GTCTC 5 cut(s) 317, 577, 1057, 1367, 2777
BsmFI GGGAC 5 cut(s) 197, 231, 437, 1371, 2733
BsmI GAATGC 4 cut(s) 122, 1105, 1832, 2210
BsnI GGCC 1 cut(s) 2137
BsoBI CYCGRG 1 cut(s) 214
Bsp1286I GDGCHC 3 cut(s) 1600, 2363, 2806
Bsp13I TCCGGA 4 cut(s) 136, 610, 1793, 1817
Bsp1720I GCTNAGC 1 cut(s) 2225
BspANI GGCC 1 cut(s) 2137
BspCNI CTCAG 4 cut(s) 313, 391, 1097, 2143
BspDI ATCGAT 1 cut(s) 2397
BspEI TCCGGA 4 cut(s) 136, 610, 1793, 1817
BspFNI CGCG 7 cut(s) 120, 166, 381, 1589, 1610, 1953, 1988
BspLI GGNNCC 4 cut(s) 1495, 2805, 3096, 3120
BspOI GCTAGC 1 cut(s) 693
BspPI GGATC 5 cut(s) 2, 572, 610, 2059, 3080
BspT107I GGYRCC 3 cut(s) 1493, 2803, 3094
BspTI CTTAAG 1 cut(s) 2996
BsrBI CCGCTC 1 cut(s) 1499
BsrDI GCAATG 3 cut(s) 700, 2205, 3115
BssECI CCNNGG 3 cut(s) 214, 1937, 1986
BssNAI GTATAC 2 cut(s) 860, 1778
BssNI GRCGYC 1 cut(s) 42
BssSI CACGAG 3 cut(s) 32, 468, 2166
Bst1107I GTATAC 2 cut(s) 860, 1778
Bst2BI CACGAG 3 cut(s) 32, 468, 2166
Bst2UI CCWGG 3 cut(s) 2034, 2139, 2868
Bst4CI ACNGT 9 cut(s) 703, 1226, 1237, 1453, 1862, 1871, 2040, 2589, 3081
Bst6I CTCTTC 2 cut(s) 1730, 1844
BstACI GRCGYC 1 cut(s) 42
BstAFI CTTAAG 1 cut(s) 2996
BstAPI GCANNNNNTGC 1 cut(s) 11
BstBAI YACGTR 2 cut(s) 1641, 2282
BstC8I GCNNGC 2 cut(s) 691, 1591
BstDEI CTNAG 7 cut(s) 321, 399, 490, 1084, 1203, 2151, 2225
BstDSI CCRYGG 1 cut(s) 1986
BstENI CCTNNNNNAGG 1 cut(s) 1065
BstF5I GGATG 4 cut(s) 145, 619, 1826, 2333
BstFNI CGCG 7 cut(s) 120, 166, 381, 1589, 1610, 1953, 1988
BstH2I RGCGCY 1 cut(s) 2232
BstHHI GCGC 4 cut(s) 122, 383, 793, 2231
BstMAI GTCTC 5 cut(s) 317, 577, 1057, 1367, 2777
BstMWI GCNNNNNNNGC 9 cut(s) 11, 790, 1595, 1916, 1925, 2367, 2455, 2513, 2564
BstNI CCWGG 3 cut(s) 2034, 2139, 2868
BstNSI RCATGY 4 cut(s) 538, 930, 1478, 1733
BstSCI CCNGG 7 cut(s) 213, 214, 1844, 1936, 2032, 2137, 2866
BstSFI CTRYAG 1 cut(s) 441
BstSLI GKGCMC 1 cut(s) 2806
BstUI CGCG 7 cut(s) 120, 166, 381, 1589, 1610, 1953, 1988
BstV1I GCAGC 6 cut(s) 328, 1280, 1931, 2515, 2516, 2567
BstV2I GAAGAC 5 cut(s) 1064, 1627, 2148, 2359, 2417
BstX2I RGATCY 3 cut(s) 7, 602, 2910
BstXI CCANNNNNNTGG 1 cut(s) 1001
BstYI RGATCY 3 cut(s) 7, 602, 2910
BstZ17I GTATAC 2 cut(s) 860, 1778
Bsu15I ATCGAT 1 cut(s) 2397
Bsu36I CCTNAGG 1 cut(s) 1203
BsuI GTATCC 2 cut(s) 1032, 1801
BsuRI GGCC 1 cut(s) 2137
BsuTUI ATCGAT 1 cut(s) 2397
BtgI CCRYGG 1 cut(s) 1986
BtgZI GCGATG 1 cut(s) 1934
BtsCI GGATG 4 cut(s) 145, 619, 1826, 2333
BtsIMutI CAGTG 1 cut(s) 574
Cac8I GCNNGC 2 cut(s) 691, 1591
CaiI CAGNNNCTG 2 cut(s) 11, 3128
CfoI GCGC 4 cut(s) 122, 383, 793, 2231
Cfr13I GGNCC 4 cut(s) 608, 1058, 2297, 2973
Cfr42I CCGCGG 1 cut(s) 1989
Cfr9I CCCGGG 1 cut(s) 214
ClaI ATCGAT 1 cut(s) 2397
CseI GACGC 2 cut(s) 387, 2522
DdeI CTNAG 7 cut(s) 321, 399, 490, 1084, 1203, 2151, 2225
DraI TTTAAA 1 cut(s) 1914
Eam1104I CTCTTC 2 cut(s) 1730, 1844
EarI CTCTTC 2 cut(s) 1730, 1844
Ecl136II GAGCTC 1 cut(s) 1598
Eco147I AGGCCT 1 cut(s) 2137
Eco24I GRGCYC 2 cut(s) 1600, 2363
Eco47I GGWCC 4 cut(s) 608, 1058, 2297, 2973
Eco53kI GAGCTC 1 cut(s) 1598
Eco57I CTGAAG 2 cut(s) 684, 2685
Eco72I CACGTG 1 cut(s) 1641
Eco81I CCTNAGG 1 cut(s) 1203
Eco88I CYCGRG 1 cut(s) 214
EcoICRI GAGCTC 1 cut(s) 1598
EcoNI CCTNNNNNAGG 1 cut(s) 1065
EcoRI GAATTC 1 cut(s) 1571
EcoRII CCWGG 3 cut(s) 2032, 2137, 2866
EcoT38I GRGCYC 2 cut(s) 1600, 2363
FalI AAGNNNNNCTT 2 cut(s) 2524, 2556
FaqI GGGAC 5 cut(s) 197, 231, 437, 1371, 2733
FblI GTMKAC 4 cut(s) 45, 859, 1777, 2892
Fnu4HI GCNGC 8 cut(s) 342, 1269, 1750, 1920, 1986, 2505, 2529, 2556
FokI GGATG 4 cut(s) 152, 626, 1833, 2320
FriOI GRGCYC 2 cut(s) 1600, 2363
Fsp4HI GCNGC 8 cut(s) 342, 1269, 1750, 1920, 1986, 2505, 2529, 2556
FspBI CTAG 7 cut(s) 15, 228, 690, 1314, 1511, 1623, 3136
GlaI GCGC 4 cut(s) 121, 382, 792, 2230
GluI GCNGC 8 cut(s) 342, 1269, 1750, 1920, 1986, 2505, 2529, 2556
GsuI CTGGAG 2 cut(s) 2016, 2601
HaeII RGCGCY 1 cut(s) 2232
HaeIII GGCC 1 cut(s) 2137
HapII CCGG 7 cut(s) 137, 215, 611, 1794, 1818, 1846, 1937
HgaI GACGC 2 cut(s) 387, 2522
HhaI GCGC 4 cut(s) 122, 383, 793, 2231
Hin1I GRCGYC 1 cut(s) 42
Hin6I GCGC 4 cut(s) 120, 381, 791, 2229
HinP1I GCGC 4 cut(s) 120, 381, 791, 2229
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HindIII AAGCTT 3 cut(s) 1908, 2667, 2817
HpaII CCGG 7 cut(s) 137, 215, 611, 1794, 1818, 1846, 1937
Hpy99I CGWCG 5 cut(s) 47, 381, 1457, 2922, 3094
HpyAV CCTTC 6 cut(s) 659, 837, 1061, 2596, 2772, 3109
HpyCH4III ACNGT 9 cut(s) 703, 1226, 1237, 1453, 1862, 1871, 2040, 2589, 3081
HpyCH4V TGCA 7 cut(s) 926, 2027, 2210, 2348, 2449, 2531, 2582
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 790, 1595, 1916, 1925, 2367, 2455, 2513, 2564
HpyF3I CTNAG 7 cut(s) 321, 399, 490, 1084, 1203, 2151, 2225
Hsp92I GRCGYC 1 cut(s) 42
HspAI GCGC 4 cut(s) 120, 381, 791, 2229
Kpn2I TCCGGA 4 cut(s) 136, 610, 1793, 1817
KpnI GGTACC 2 cut(s) 1497, 3098
KspI CCGCGG 1 cut(s) 1989
LmnI GCTCC 7 cut(s) 1154, 1595, 1796, 1820, 1933, 2266, 3073
Lsp1109I GCAGC 6 cut(s) 328, 1280, 1931, 2515, 2516, 2567
LweI GCATC 2 cut(s) 1951, 2962
MaeI CTAG 7 cut(s) 15, 228, 690, 1314, 1511, 1623, 3136
MbiI CCGCTC 1 cut(s) 1499
MfeI CAATTG 1 cut(s) 483
MflI RGATCY 3 cut(s) 7, 602, 2910
MhlI GDGCHC 3 cut(s) 1600, 2363, 2806
MlyI GAGTC 4 cut(s) 1059, 2000, 2162, 3050
MmeI TCCRAC 9 cut(s) 77, 817, 1412, 1546, 1955, 2215, 2288, 3068, 3078
MroI TCCGGA 4 cut(s) 136, 610, 1793, 1817
MroXI GAANNNNTTC 3 cut(s) 1071, 1136, 2493
MslI CAYNNNNRTG 5 cut(s) 36, 411, 945, 1020, 1887
MspA1I CMGCKG 1 cut(s) 1988
MspCI CTTAAG 1 cut(s) 2996
MspI CCGG 7 cut(s) 137, 215, 611, 1794, 1818, 1846, 1937
MspR9I CCNGG 7 cut(s) 215, 216, 1846, 1938, 2034, 2139, 2868
MunI CAATTG 1 cut(s) 483
Mva1269I GAATGC 4 cut(s) 122, 1105, 1832, 2210
MvaI CCWGG 3 cut(s) 2034, 2139, 2868
MvnI CGCG 7 cut(s) 120, 166, 381, 1589, 1610, 1953, 1988
MwoI GCNNNNNNNGC 9 cut(s) 11, 790, 1595, 1916, 1925, 2367, 2455, 2513, 2564
NciI CCSGG 4 cut(s) 215, 216, 1846, 1938
NheI GCTAGC 1 cut(s) 689
NlaIV GGNNCC 4 cut(s) 1495, 2805, 3096, 3120
NmuCI GTSAC 7 cut(s) 38, 291, 413, 796, 965, 1340, 2878
NspI RCATGY 4 cut(s) 538, 930, 1478, 1733
OliI CACNNNNGTG 1 cut(s) 36
PceI AGGCCT 1 cut(s) 2137
PciI ACATGT 2 cut(s) 534, 1474
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 1572
PctI GAATGC 4 cut(s) 122, 1105, 1832, 2210
PdmI GAANNNNTTC 3 cut(s) 1071, 1136, 2493
PfeI GAWTC 7 cut(s) 623, 737, 990, 2142, 2645, 3040, 3125
PflFI GACNNNGTC 1 cut(s) 449
PfoI TCCNGGA 1 cut(s) 2032
PkrI GCNGC 8 cut(s) 343, 1270, 1751, 1921, 1987, 2506, 2530, 2557
PleI GAGTC 4 cut(s) 1058, 1999, 2161, 3050
PmaCI CACGTG 1 cut(s) 1641
PmlI CACGTG 1 cut(s) 1641
PpsI GAGTC 4 cut(s) 1058, 1999, 2161, 3050
Ppu21I YACGTR 2 cut(s) 1641, 2282
PscI ACATGT 2 cut(s) 534, 1474
PsiI TTATAA 1 cut(s) 1866
Psp124BI GAGCTC 1 cut(s) 1600
Psp1406I AACGTT 1 cut(s) 149
Psp6I CCWGG 3 cut(s) 2032, 2137, 2866
PspCI CACGTG 1 cut(s) 1641
PspGI CCWGG 3 cut(s) 2032, 2137, 2866
PspN4I GGNNCC 4 cut(s) 1495, 2805, 3096, 3120
PspPI GGNCC 4 cut(s) 608, 1058, 2297, 2973
PstNI CAGNNNCTG 2 cut(s) 11, 3128
PsuI RGATCY 3 cut(s) 7, 602, 2910
PsyI GACNNNGTC 1 cut(s) 449
RseI CAYNNNNRTG 5 cut(s) 36, 411, 945, 1020, 1887
SacI GAGCTC 1 cut(s) 1600
SacII CCGCGG 1 cut(s) 1989
SalI GTCGAC 1 cut(s) 44
SatI GCNGC 8 cut(s) 342, 1269, 1750, 1920, 1986, 2505, 2529, 2556
Sau96I GGNCC 4 cut(s) 608, 1058, 2297, 2973
ScaI AGTACT 1 cut(s) 1080
SchI GAGTC 4 cut(s) 1059, 2000, 2162, 3050
ScrFI CCNGG 7 cut(s) 215, 216, 1846, 1938, 2034, 2139, 2868
SduI GDGCHC 3 cut(s) 1600, 2363, 2806
SfaNI GCATC 2 cut(s) 1951, 2962
SfcI CTRYAG 1 cut(s) 441
Sfr303I CCGCGG 1 cut(s) 1989
SgrBI CCGCGG 1 cut(s) 1989
SinI GGWCC 4 cut(s) 608, 1058, 2297, 2973
SmaI CCCGGG 1 cut(s) 216
SmiMI CAYNNNNRTG 5 cut(s) 36, 411, 945, 1020, 1887
SmlI CTYRAG 7 cut(s) 86, 574, 1717, 2570, 2658, 2770, 2996
SmoI CTYRAG 7 cut(s) 86, 574, 1717, 2570, 2658, 2770, 2996
SseBI AGGCCT 1 cut(s) 2137
SspI AATATT 1 cut(s) 463
SspMI CTAG 7 cut(s) 15, 228, 690, 1314, 1511, 1623, 3136
SstI GAGCTC 1 cut(s) 1600
StuI AGGCCT 1 cut(s) 2137
StyD4I CCNGG 7 cut(s) 213, 214, 1844, 1936, 2032, 2137, 2866
TaaI ACNGT 9 cut(s) 703, 1226, 1237, 1453, 1862, 1871, 2040, 2589, 3081
TaqI TCGA 9 cut(s) 45, 376, 753, 1278, 2087, 2397, 2789, 2917, 3038
TaqII GACCGA 1 cut(s) 2371
TatI WGTACW 5 cut(s) 548, 715, 1078, 1210, 2810
TauI GCSGC 2 cut(s) 1752, 1988
TfiI GAWTC 7 cut(s) 623, 737, 990, 2142, 2645, 3040, 3125
TscAI CASTG 1 cut(s) 574
TseFI GTSAC 7 cut(s) 38, 291, 413, 796, 965, 1340, 2878
TseI GCWGC 6 cut(s) 341, 1268, 1919, 2504, 2528, 2555
Tsp45I GTSAC 7 cut(s) 38, 291, 413, 796, 965, 1340, 2878
TspGWI ACGGA 3 cut(s) 696, 1377, 3078
TspMI CCCGGG 1 cut(s) 214
TspRI CASTG 1 cut(s) 574
Tth111I GACNNNGTC 1 cut(s) 449
Vha464I CTTAAG 1 cut(s) 2996
VpaK11BI GGWCC 4 cut(s) 608, 1058, 2297, 2973
XagI CCTNNNNNAGG 1 cut(s) 1065
XapI RAATTY 5 cut(s) 113, 350, 1571, 2113, 3013
XbaI TCTAGA 1 cut(s) 1622
XceI RCATGY 4 cut(s) 538, 930, 1478, 1733
XmaI CCCGGG 1 cut(s) 214
XmiI GTMKAC 4 cut(s) 45, 859, 1777, 2892
XmnI GAANNNNTTC 3 cut(s) 1071, 1136, 2493
XspI CTAG 7 cut(s) 15, 228, 690, 1314, 1511, 1623, 3136
ZraI GACGTC 1 cut(s) 43
ZrmI AGTACT 1 cut(s) 1080
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.