Rh4CG049800

Protein present in Fab1, YOTB, Vac1, and EEA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0006555
Physical Location & Seq
Forward (+)
10010212 .. 10016804
6593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG049800.1

Sequence Viewer

Length: 3222 bp
ATGAAGTCACTCATTGCATTAAAAAAAGGAACCCAGTTGATTAAGTACAGCCGGAAAGGAAAGCCAAAGCTTCGTCCATTCAGACTTTCTGCGGATGAAACCACTCTAGTCTGGTTATCACATGGAGAAGAACGACATCTGAAATTATCGACAGTCACTAGAATTATACCCGGACAGAGAACAGCTGTGTTTAGAAGATATTTGCGTCCAGAAAAGGATTACTTATCATTTTCTCTTCTATATAATAACGGTGAACGGTCACTTGATCTGGTCTGCAAGGATAAAGCTGAGGTAGAGGCATGGATTGCTGGCCTTAAGGCACTAATTTCTCGAGGACAGCGTAATAGGCGTACAAAGAGTGATCTTACTGAAATTCACGACGGAAGTGAATCTGTTAGTGGCCGTCATTCTGGAGTCACCTTAAATGACACTTCTAGCCATGGTAGGGTATCCATTGATTCTCGTGAATCAGTGAGTTTTGGAAGCTCAGATGCGGGTGCAGAACGTGCAAATATGCAACTAAGAACAAGTACAGGAGATGGTTTTCGAGTTAGTGTTTCAAGCACTCCTAGCTGCTCAAGTGGAGGGTCTGGACCTGATGACATAGAATCACTAGGAGATGTTTATGTGTGGGGAGAGATCTGGTCTGATGGAAATGTACCTGATGGGTCTGCAAATGTAATACCTATAAACACTGATGTGCTTATTCCAAAGCCCTTGGAGTCGAATGTTGTTCTTGATGTTCATCAAATTGCTTGTGGTGTTAGACATATTGCTCTTGTAACAAGGCAAGGTGAAGTTTTCACCTGGGGAGAGGAATCTGGTGGAAGACTTGGTCATGGGATTGATAGAGACTTTAGTCGCCCTCGCCTTGTTGAGTTCCTGGCTCTTAATAATGTAGAATTTGTTGCATGTGGCGAGTATCATTCATGTGCTGTATCTACGTCTGGTGATTTATTTACTTGGGGTGATGGTACACATAATGCTGGACTTCTTGGTCATGGTACTGATGTTAGCCACTGGCTACCTAAAAGGATTACTGGTTCTTTAGAAGGACTACAGGTTCTGTCGGTTGCATGTGGCACATGGCATTCAGCTTTGGCAACTTATAATGGCAAACTCTTTACATTTGGAGATGGAAAATTTGGAGTTTTGGGACATGGAGATCGAGAGAGTATTGCATATCCAAGGGAGGTGCAGTTATTGAGTGGGCTGAAGACTATAAAAGTAGCTTGTGGTGTTTGGCATACTGCAGCTATTGTAGAGGTTATGGGTCAGTCTGGTGTAAATGTTTCATCTCGAAAGCTGTTCACTTGGGGTGATGGTGATAAACATCGTTTAGGTCATGGAAGCAAGGACACATATCTTCTTCCTACCTGTGTCTCTTCACTTATCGACTATAATTTCCAGCAGCTAGCATGTGGACACACAATGACTATTGCCCTCACCACATCTGGTCATGTGTTTACCATGGGTGGTACTGCATATGGTCAACTAGGAAATCCTAGTTCTGATGGGAAAGCACCTTGCTTAGTACAGGATAAATTGGTAGGTGAGTTTGTTGAAGAAATATCATGTGGATCCCATCATGTTGCTGTCCTGACATCGAGAAGTGAAGTATTCACATGGGGCAGAGGTGCTAATGGAAGACTGGGACATGGGGACACCGAAGATCGGAGAACACCAACTATGGTTGAAGCTCTGAAAGATAGGCATGTGAAAAGCATATCATGTGGCTCAAACTTCACATCTAGTATATGTATCCATAAATGGGTTTCTGGAGCTGATCAGTCAGTTTGCTCAGGTTGTCGACAGGCATTTGGTTTTACTAGGAAGAGGCATAACTGTTATAATTGTGGACTAGTCCATTGCCATGCTTGTAGTTCCAAAAAAGCACTGAGGGCTGCATTGGCTCCCACTCCTGGAAAACCTCATCGCGTATGTGATTCTTGTTATGCTAAGCTTAAATCTGCTGAGGCTGGGAATTCTAGTACTGTTAGTAGGAGAGCTACAATCGCCCGTTCAATGGACAGAGATGGTCTTAGTAGGGGAGAGGCTAGATCTTCAAGGATTCTGCTTCCTCCCATCATAGAACCAGTGAAATATCATGAGATTAAGTCAATGAAGGCTGGGGGAAGATCGGAATCTCCTTCTATAGTTAGGGCTTCCCAAGTTCCATCCCTTTTACAACTGAAAGATATTGCATTTCCAAGTTCATTGAGTGTTCTTCAAAATGCTTTGAGGCCTGCTATACCAGTAACACCTCAGTCTAATACTGCAAGGTCAAGATCTAGTTCACCATATTCAAGGAGACCAAGCCCTCCACGGTCTGCAACTCCTATATTTTCTAGAAGTGTTATTGACAGTCTTAAAAGGACAAATGACAGTCTGATTCACGAACTATCAAAGTTGCAAACCCAGGTCAGAAGTCTGAAGCAGAAGTGTGATACTCAAGATCTGGAGATTCGAAAACTAAATAAAAATGCTAAAGAAGCTAGTTCATTAGCAGAAGAACAATTTTCCAAGTGCAGAGCCGTGAAGGAACTTGTCAAGTCCATAACAGAACAGATGAAGGAATTGGCAGACAAGTTGCCTCCTGAGGTTTTTGACAACGAGAACTTCGAATCATTGAGTGCTCAAGCAGAAGAATTTATAAACACATACAGTGAAAGATCAAGCTTAGACCATGATCAACAAGGTGCAGCTGATAAGTCTTCCTCGGTACCTGAGTCTTCAAAAATGGCAGAGAACAGAGTGGATGACCATGTAGTGACTGCTGACTCTCAAACCAGCTCAGCAAGCACCTCGAAGTCAAATGAATCATCAACAATGCAGACCGAAGGACAAAGGGAAGTCATTGAACAATTTGAACCAGGTGTTTATGTAACTCTGCTTCAACTACCAAATGGTGCTAGGGCTTTCCGGCGTGTTAAATTCAGTAAACGGAGGTTTAGTTCGCAACAGGCAGAAGAATGGTGGACTAACAACAGAGAAAGGCTGCTTAGAAGATACAGTCAACCGAGGACAGCTCCTCTTCCTCCAAGTGTACCATCACCGTCCAGCACTAGAGAACCTCCTGAAGATCAAAACAGCTCTGAGGCAGCCTCATCTTCAAATCAAAACAGTTCTGAGGCCGCCCCGTTTTCAAATCAAAACAACACTGAGGCAGCCTCATCTTCAAATCAAAACAACACTGAGGCAGCCTCATCTTCTGATACATAG

Protein Analysis

1073

Amino Acids

116.98

Weight (kDa)

8.75

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH_12 PF16457 5 - 109 1.6e-08 Pleckstrin homology domain
WD40_RLD PF25390 208 - 583 4.8e-78 RCC1-like domain
RCC1 PF00415 264 - 313 9.3e-12 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 303 - 327 1.7e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 316 - 367 1.6e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 371 - 420 1.1e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 436 - 482 1.5e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 485 - 534 7.1e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 539 - 583 3.9e-14 Regulator of chromosome condensation (RCC1) repeat
FYVE PF01363 590 - 656 2.1e-15 FYVE zinc finger
BRX_N PF13713 841 - 874 4.6e-12 Transcription factor BRX N-terminal domain
BRX PF08381 950 - 1004 8.3e-24 Transcription factor regulating root and shoot growth via Pin3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1110, 1851, 2654
AasI GACNNNNNNGTC 1 cut(s) 996
Acc65I GGTACC 1 cut(s) 2722
AccB1I GGYRCC 1 cut(s) 2722
AccI GTMKAC 1 cut(s) 1810
AccII CGCG 1 cut(s) 1938
AciI CCGC 3 cut(s) 92, 494, 3135
AclWI GGATC 2 cut(s) 1575, 1588
AcoI YGGCCR 1 cut(s) 400
AcsI RAATTY 6 cut(s) 372, 902, 1142, 1984, 2648, 2933
AcuI CTGAAG 3 cut(s) 1235, 2453, 3099
AfiI CCNNNNNNNGG 5 cut(s) 445, 1674, 1771, 1922, 2026
AflII CTTAAG 1 cut(s) 314
AhlI ACTAGT 1 cut(s) 1861
AjnI CCWGG 5 cut(s) 806, 882, 1921, 2418, 2872
AleI CACNNNNGTG 1 cut(s) 698
AloI GAACNNNNNNTCC 6 cut(s) 1027, 1047, 1059, 1079, 2938, 2970
Alw21I GWGCWC 1 cut(s) 2638
Alw26I GTCTC 3 cut(s) 846, 1387, 2305
AlwI GGATC 2 cut(s) 1575, 1588
AlwNI CAGNNNCTG 1 cut(s) 1066
Ama87I CYCGRG 1 cut(s) 330
AoxI GGCC 4 cut(s) 310, 400, 2243, 3132
ApeKI GCWGC 9 cut(s) 573, 1253, 1411, 1904, 2702, 2998, 3101, 3167, 3200
ApoI RAATTY 6 cut(s) 372, 902, 1142, 1984, 2648, 2933
Asp718I GGTACC 1 cut(s) 2722
AspS9I GGNCC 1 cut(s) 593
AsuC2I CCSGG 1 cut(s) 171
AsuII TTCGAA 2 cut(s) 2467, 2622
AsuNHI GCTAGC 1 cut(s) 1414
AvaI CYCGRG 1 cut(s) 330
AvaII GGWCC 1 cut(s) 593
AxyI CCTNAGG 1 cut(s) 2598
BaeI ACNNNNGTAYC 4 cut(s) 996, 1029, 2714, 2747
BamHI GGATCC 1 cut(s) 1580
BanI GGYRCC 1 cut(s) 2722
BarI GAAGNNNNNNTAC 2 cut(s) 2877, 2909
BauI CACGAG 1 cut(s) 462
BbsI GAAGAC 5 cut(s) 835, 1223, 1654, 2706, 2724
Bbv12I GWGCWC 1 cut(s) 2638
BbvCI CCTCAGC 2 cut(s) 288, 1974
BbvI GCAGC 9 cut(s) 560, 1265, 1423, 1891, 2714, 2985, 3113, 3179, 3212
BceAI ACGGC 2 cut(s) 387, 2519
BcgI CGANNNNNNTGC 2 cut(s) 2787, 2821
BciT130I CCWGG 5 cut(s) 808, 884, 1923, 2420, 2874
BciVI GTATCC 2 cut(s) 460, 1772
BclI TGATCA 2 cut(s) 1786, 2689
BcnI CCSGG 1 cut(s) 171
BcoDI GTCTC 3 cut(s) 846, 1387, 2305
BcuI ACTAGT 1 cut(s) 1861
BfmI CTRYAG 3 cut(s) 1058, 1251, 2154
BfrI CTTAAG 1 cut(s) 314
BfuI GTATCC 2 cut(s) 460, 1772
BglII AGATCT 4 cut(s) 639, 2060, 2288, 2455
BlpI GCTNAGC 2 cut(s) 1959, 2794
BmcAI AGTACT 1 cut(s) 1993
Bme1390I CCNGG 6 cut(s) 171, 808, 884, 1923, 2420, 2874
Bme18I GGWCC 1 cut(s) 593
BmeT110I CYCGRG 1 cut(s) 330
BmgT120I GGNCC 1 cut(s) 593
BmiI GGNNCC 4 cut(s) 31, 1582, 1914, 2724
BmrFI CCNGG 6 cut(s) 171, 808, 884, 1923, 2420, 2874
BmrI ACTGGG 2 cut(s) 28, 1661
BmsI GCATC 1 cut(s) 481
BmtI GCTAGC 1 cut(s) 1418
BmuI ACTGGG 2 cut(s) 28, 1661
BoxI GACNNNNGTC 1 cut(s) 858
BpiI GAAGAC 5 cut(s) 835, 1223, 1654, 2706, 2724
BplI GAGNNNNNCTC 8 cut(s) 3013, 3045, 3089, 3121, 3155, 3187, 3188, 3220
BpmI CTGGAG 3 cut(s) 432, 1800, 2480
Bpu10I CCTNAGC 3 cut(s) 288, 1801, 1974
Bpu1102I GCTNAGC 2 cut(s) 1959, 2794
Bpu14I TTCGAA 2 cut(s) 2467, 2622
BpuEI CTTGAG 3 cut(s) 562, 2436, 2622
BpuMI CCSGG 1 cut(s) 171
BsaBI GATNNNNATC 3 cut(s) 744, 1332, 2143
BsaI GGTCTC 1 cut(s) 2305
BsaJI CCNNGG 9 cut(s) 439, 717, 807, 1187, 1470, 2324, 2418, 2718, 3020
BsaXI ACNNNNNCTCC 4 cut(s) 1184, 1214, 2938, 2968
Bsc4I CCNNNNNNNGG 5 cut(s) 445, 1674, 1771, 1922, 2026
Bse1I ACTGG 6 cut(s) 34, 1025, 1045, 1656, 2096, 2255
Bse21I CCTNAGG 1 cut(s) 2598
Bse3DI GCAATG 2 cut(s) 12, 1867
Bse8I GATNNNNATC 3 cut(s) 744, 1332, 2143
BseBI CCWGG 5 cut(s) 808, 884, 1923, 2420, 2874
BseDI CCNNGG 9 cut(s) 439, 717, 807, 1187, 1470, 2324, 2418, 2718, 3020
BseGI GGATG 3 cut(s) 100, 2177, 2764
BseJI GATNNNNATC 3 cut(s) 744, 1332, 2143
BseLI CCNNNNNNNGG 5 cut(s) 445, 1674, 1771, 1922, 2026
BseMI GCAATG 2 cut(s) 12, 1867
BseNI ACTGG 6 cut(s) 34, 1025, 1045, 1656, 2096, 2255
BseRI GAGGAG 1 cut(s) 3021
BseXI GCAGC 9 cut(s) 560, 1265, 1423, 1891, 2714, 2985, 3113, 3179, 3212
BseYI CCCAGC 2 cut(s) 1979, 2129
BsgI GTGCAG 4 cut(s) 519, 1217, 2548, 2721
Bsh1236I CGCG 1 cut(s) 1938
BshFI GGCC 4 cut(s) 312, 402, 2245, 3134
BshNI GGYRCC 1 cut(s) 2722
BsiHKAI GWGCWC 1 cut(s) 2638
BsiHKCI CYCGRG 1 cut(s) 330
BsiSI CCGG 3 cut(s) 52, 171, 2923
BslFI GGGAC 3 cut(s) 1170, 1668, 1676
BslI CCNNNNNNNGG 5 cut(s) 445, 1674, 1771, 1922, 2026
BsmAI GTCTC 3 cut(s) 846, 1387, 2305
BsmFI GGGAC 3 cut(s) 1170, 1668, 1676
BsmI GAATGC 1 cut(s) 1090
BsnI GGCC 4 cut(s) 312, 402, 2245, 3134
Bso31I GGTCTC 1 cut(s) 2305
BsoBI CYCGRG 1 cut(s) 330
Bsp119I TTCGAA 2 cut(s) 2467, 2622
Bsp1286I GDGCHC 1 cut(s) 2638
Bsp1720I GCTNAGC 2 cut(s) 1959, 2794
Bsp19I CCATGG 2 cut(s) 439, 1470
BspACI CCGC 3 cut(s) 92, 494, 3135
BspANI GGCC 4 cut(s) 312, 402, 2245, 3134
BspFNI CGCG 1 cut(s) 1938
BspHI TCATGA 1 cut(s) 2107
BspLI GGNNCC 4 cut(s) 31, 1582, 1914, 2724
BspMAI CTGCAG 1 cut(s) 1255
BspOI GCTAGC 1 cut(s) 1418
BspPI GGATC 2 cut(s) 1575, 1588
BspT104I TTCGAA 2 cut(s) 2467, 2622
BspT107I GGYRCC 1 cut(s) 2722
BspTI CTTAAG 1 cut(s) 314
BspTNI GGTCTC 1 cut(s) 2305
BsrDI GCAATG 2 cut(s) 12, 1867
BsrI ACTGG 6 cut(s) 34, 1025, 1045, 1656, 2096, 2255
BssECI CCNNGG 9 cut(s) 439, 717, 807, 1187, 1470, 2324, 2418, 2718, 3020
BssSI CACGAG 1 cut(s) 462
BssT1I CCWWGG 4 cut(s) 439, 717, 1187, 1470
Bst2BI CACGAG 1 cut(s) 462
Bst2UI CCWGG 5 cut(s) 808, 884, 1923, 2420, 2874
Bst6I CTCTTC 4 cut(s) 240, 1390, 1829, 3039
BstAFI CTTAAG 1 cut(s) 314
BstAPI GCANNNNNTGC 2 cut(s) 305, 506
BstBI TTCGAA 2 cut(s) 2467, 2622
BstC8I GCNNGC 4 cut(s) 310, 1416, 2247, 2800
BstDSI CCRYGG 3 cut(s) 439, 1470, 2324
BstF5I GGATG 3 cut(s) 100, 2177, 2764
BstFNI CGCG 1 cut(s) 1938
BstMAI GTCTC 3 cut(s) 846, 1387, 2305
BstMWI GCNNNNNNNGC 9 cut(s) 305, 346, 506, 570, 1901, 1910, 2015, 2492, 2799
BstNI CCWGG 5 cut(s) 808, 884, 1923, 2420, 2874
BstNSI RCATGY 4 cut(s) 915, 1080, 1422, 1718
BstPAI GACNNNNGTC 1 cut(s) 858
BstSCI CCNGG 6 cut(s) 169, 806, 882, 1921, 2418, 2872
BstSFI CTRYAG 3 cut(s) 1058, 1251, 2154
BstUI CGCG 1 cut(s) 1938
BstV1I GCAGC 9 cut(s) 560, 1265, 1423, 1891, 2714, 2985, 3113, 3179, 3212
BstV2I GAAGAC 5 cut(s) 835, 1223, 1654, 2706, 2724
BstX2I RGATCY 5 cut(s) 639, 1580, 2060, 2288, 2455
BstYI RGATCY 5 cut(s) 639, 1580, 2060, 2288, 2455
Bsu36I CCTNAGG 1 cut(s) 2598
BsuI GTATCC 2 cut(s) 460, 1772
BsuRI GGCC 4 cut(s) 312, 402, 2245, 3134
BtgI CCRYGG 3 cut(s) 439, 1470, 2324
BtgZI GCGATG 1 cut(s) 1919
BtsCI GGATG 3 cut(s) 100, 2177, 2764
BtsIMutI CAGTG 8 cut(s) 477, 693, 1018, 1895, 2103, 2671, 3159, 3192
Cac8I GCNNGC 4 cut(s) 310, 1416, 2247, 2800
CaiI CAGNNNCTG 1 cut(s) 1066
CciI TCATGA 1 cut(s) 2107
Cfr13I GGNCC 1 cut(s) 593
CseI GACGC 1 cut(s) 194
CsiI ACCWGGT 1 cut(s) 2872
DrdI GACNNNNNNGTC 1 cut(s) 996
DseDI GACNNNNNNGTC 1 cut(s) 996
EaeI YGGCCR 1 cut(s) 400
Eam1104I CTCTTC 4 cut(s) 240, 1390, 1829, 3039
EarI CTCTTC 4 cut(s) 240, 1390, 1829, 3039
Eco130I CCWWGG 4 cut(s) 439, 717, 1187, 1470
Eco147I AGGCCT 1 cut(s) 2245
Eco31I GGTCTC 1 cut(s) 2305
Eco47I GGWCC 1 cut(s) 593
Eco57I CTGAAG 3 cut(s) 1235, 2453, 3099
Eco81I CCTNAGG 1 cut(s) 2598
Eco88I CYCGRG 1 cut(s) 330
EcoRI GAATTC 1 cut(s) 1984
EcoRII CCWGG 5 cut(s) 806, 882, 1921, 2418, 2872
EcoT14I CCWWGG 4 cut(s) 439, 717, 1187, 1470
ErhI CCWWGG 4 cut(s) 439, 717, 1187, 1470
FalI AAGNNNNNCTT 2 cut(s) 206, 238
FaqI GGGAC 3 cut(s) 1170, 1668, 1676
FauI CCCGC 1 cut(s) 487
FauNDI CATATG 1 cut(s) 1486
FbaI TGATCA 2 cut(s) 1786, 2689
FblI GTMKAC 1 cut(s) 1810
FokI GGATG 3 cut(s) 107, 2164, 2771
GsaI CCCAGC 2 cut(s) 1983, 2133
GsuI CTGGAG 3 cut(s) 432, 1800, 2480
HaeIII GGCC 4 cut(s) 312, 402, 2245, 3134
HapII CCGG 3 cut(s) 52, 171, 2923
HgaI GACGC 1 cut(s) 194
HincII GTYRAC 3 cut(s) 1493, 1811, 3017
HindII GTYRAC 3 cut(s) 1493, 1811, 3017
HindIII AAGCTT 3 cut(s) 68, 1961, 2677
HpaII CCGG 3 cut(s) 52, 171, 2923
Hpy99I CGWCG 1 cut(s) 383
HpyAV CCTTC 6 cut(s) 1046, 2119, 2160, 2533, 2566, 2834
HpyCH4IV ACGT 2 cut(s) 505, 944
HpyF10VI GCNNNNNNNGC 9 cut(s) 305, 346, 506, 570, 1901, 1910, 2015, 2492, 2799
HpySE526I ACGT 2 cut(s) 505, 944
KpnI GGTACC 1 cut(s) 2726
Ksp22I TGATCA 2 cut(s) 1786, 2689
LmnI GCTCC 3 cut(s) 1781, 1918, 3034
Lsp1109I GCAGC 9 cut(s) 560, 1265, 1423, 1891, 2714, 2985, 3113, 3179, 3212
LweI GCATC 1 cut(s) 481
MabI ACCWGGT 1 cut(s) 2872
MaeII ACGT 2 cut(s) 505, 944
MaeIII GTNAC 8 cut(s) 6, 154, 258, 415, 781, 2257, 2770, 2884
MflI RGATCY 5 cut(s) 639, 1580, 2060, 2288, 2455
MhlI GDGCHC 1 cut(s) 2638
MlyI GAGTC 4 cut(s) 423, 731, 2738, 2774
MseI TTAA 9 cut(s) 20, 42, 315, 422, 891, 1965, 2115, 2370, 2931
MslI CAYNNNNRTG 3 cut(s) 698, 930, 1872
MspA1I CMGCKG 2 cut(s) 185, 2705
MspCI CTTAAG 1 cut(s) 314
MspI CCGG 3 cut(s) 52, 171, 2923
MspR9I CCNGG 6 cut(s) 171, 808, 884, 1923, 2420, 2874
Mva1269I GAATGC 1 cut(s) 1090
MvaI CCWGG 5 cut(s) 808, 884, 1923, 2420, 2874
MvnI CGCG 1 cut(s) 1938
MwoI GCNNNNNNNGC 9 cut(s) 305, 346, 506, 570, 1901, 1910, 2015, 2492, 2799
NciI CCSGG 1 cut(s) 171
NcoI CCATGG 2 cut(s) 439, 1470
NdeI CATATG 1 cut(s) 1486
NheI GCTAGC 1 cut(s) 1414
NlaIV GGNNCC 4 cut(s) 31, 1582, 1914, 2724
NmuCI GTSAC 5 cut(s) 6, 154, 258, 415, 2770
NspI RCATGY 4 cut(s) 915, 1080, 1422, 1718
NspV TTCGAA 2 cut(s) 2467, 2622
OliI CACNNNNGTG 1 cut(s) 698
PaeR7I CTCGAG 1 cut(s) 330
PagI TCATGA 1 cut(s) 2107
PceI AGGCCT 1 cut(s) 2245
PcsI WCGNNNNNNNCGW 2 cut(s) 337, 2619
PctI GAATGC 1 cut(s) 1090
PflFI GACNNNGTC 1 cut(s) 834
PfoI TCCNGGA 1 cut(s) 1921
PleI GAGTC 4 cut(s) 422, 730, 2737, 2774
PpsI GAGTC 4 cut(s) 422, 730, 2737, 2774
PshAI GACNNNNGTC 1 cut(s) 858
PsiI TTATAA 3 cut(s) 1110, 1851, 2654
Psp6I CCWGG 5 cut(s) 806, 882, 1921, 2418, 2872
PspFI CCCAGC 2 cut(s) 1979, 2129
PspGI CCWGG 5 cut(s) 806, 882, 1921, 2418, 2872
PspN4I GGNNCC 4 cut(s) 31, 1582, 1914, 2724
PspPI GGNCC 1 cut(s) 593
PstI CTGCAG 1 cut(s) 1255
PstNI CAGNNNCTG 1 cut(s) 1066
PsuI RGATCY 5 cut(s) 639, 1580, 2060, 2288, 2455
PsyI GACNNNGTC 1 cut(s) 834
PvuII CAGCTG 2 cut(s) 185, 2705
RseI CAYNNNNRTG 3 cut(s) 698, 930, 1872
SalI GTCGAC 1 cut(s) 1809
SaqAI TTAA 9 cut(s) 20, 42, 315, 422, 891, 1965, 2115, 2370, 2931
Sau96I GGNCC 1 cut(s) 593
ScaI AGTACT 1 cut(s) 1993
SchI GAGTC 4 cut(s) 423, 731, 2738, 2774
ScrFI CCNGG 6 cut(s) 171, 808, 884, 1923, 2420, 2874
SduI GDGCHC 1 cut(s) 2638
SexAI ACCWGGT 1 cut(s) 2872
SfaNI GCATC 1 cut(s) 481
SfcI CTRYAG 3 cut(s) 1058, 1251, 2154
Sfr274I CTCGAG 1 cut(s) 330
SfuI TTCGAA 2 cut(s) 2467, 2622
SinI GGWCC 1 cut(s) 593
SlaI CTCGAG 1 cut(s) 330
SmiMI CAYNNNNRTG 3 cut(s) 698, 930, 1872
SmlI CTYRAG 5 cut(s) 314, 330, 577, 2451, 2637
SmoI CTYRAG 5 cut(s) 314, 330, 577, 2451, 2637
SpeI ACTAGT 1 cut(s) 1861
SseBI AGGCCT 1 cut(s) 2245
SsiI CCGC 3 cut(s) 92, 494, 3135
StuI AGGCCT 1 cut(s) 2245
StyD4I CCNGG 6 cut(s) 169, 806, 882, 1921, 2418, 2872
StyI CCWWGG 4 cut(s) 439, 717, 1187, 1470
TaiI ACGT 2 cut(s) 508, 947
TaqII GACCGA 1 cut(s) 2852
TatI WGTACW 4 cut(s) 45, 530, 1534, 1991
TauI GCSGC 1 cut(s) 3137
Tru1I TTAA 9 cut(s) 20, 42, 315, 422, 891, 1965, 2115, 2370, 2931
Tru9I TTAA 9 cut(s) 20, 42, 315, 422, 891, 1965, 2115, 2370, 2931
TscAI CASTG 8 cut(s) 477, 700, 1025, 1902, 2103, 2671, 3166, 3199
TseFI GTSAC 5 cut(s) 6, 154, 258, 415, 2770
TseI GCWGC 9 cut(s) 573, 1253, 1411, 1904, 2702, 2998, 3101, 3167, 3200
Tsp45I GTSAC 5 cut(s) 6, 154, 258, 415, 2770
TspGWI ACGGA 2 cut(s) 396, 2959
TspRI CASTG 8 cut(s) 477, 700, 1025, 1902, 2103, 2671, 3166, 3199
Tth111I GACNNNGTC 1 cut(s) 834
Vha464I CTTAAG 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 593
XapI RAATTY 6 cut(s) 372, 902, 1142, 1984, 2648, 2933
XbaI TCTAGA 1 cut(s) 2348
XceI RCATGY 4 cut(s) 915, 1080, 1422, 1718
XhoI CTCGAG 1 cut(s) 330
XmiI GTMKAC 1 cut(s) 1810
ZrmI AGTACT 1 cut(s) 1993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.