Protein present in Fab1, YOTB, Vac1, and EEA1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G23270 AT3G23270 AT4G14368 AT4G14368 AT4G14368 AT4G14368 |
| fragaria_vesca | FvH4_4g03710 FvH4_4g03710 FvH4_4g03710 |
| malus_domestica | MD13G1214600.v1.1 MD16G1219800.v1.1 |
| prunus_persica | Prupe.1G040100_v2.0.a1 Prupe.1G040100_v2.0.a1 |
| pyrus_communis | pycom13g18810 pycom16g18300 |
| rosa_chinensis | RchiOBHm_Chr4g0393321 |
| rosa_laevigata | RLG00000009764 |
| rosa_multiflora | Rmu_co8237059.1_g000001 Rmu_sc0001590.1_g000009 |
| rosa_roxburghii | Rroxscaffold_5G00338310 |
| rosa_rugosa | Rorug04G0001800 |
| rosa_samantha | Rh4AG046700 Rh4BG042300 Rh4CG049800 Rh4DG044100 |
| rosa_wichuraiana | Rw4G003690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1899, 2696 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1044 |
| Acc36I | ACCTGC | 1 cut(s) | 3115 |
| AccI | GTMKAC | 4 cut(s) | 391, 1858, 2171, 3085 |
| AccII | CGCG | 1 cut(s) | 1133 |
| AciI | CCGC | 3 cut(s) | 247, 1284, 2872 |
| AclWI | GGATC | 3 cut(s) | 2, 1066, 1079 |
| AcoI | YGGCCR | 2 cut(s) | 248, 445 |
| AcsI | RAATTY | 3 cut(s) | 126, 526, 2969 |
| AcuI | CTGAAG | 5 cut(s) | 203, 1091, 2495, 2706, 3077 |
| AdeI | CACNNNGTG | 1 cut(s) | 1985 |
| AfaI | GTAC | 8 cut(s) | 158, 397, 1024, 1245, 1572, 1584, 2677, 3105 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 495, 496, 1081, 1100, 1819, 1970, 2074, 2812 |
| AflII | CTTAAG | 3 cut(s) | 356, 2411, 3038 |
| AflIII | ACRYGT | 2 cut(s) | 817, 977 |
| AjnI | CCWGG | 5 cut(s) | 211, 1361, 1969, 2179, 2460 |
| AleI | CACNNNNGTG | 1 cut(s) | 2484 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1095, 1127 |
| Alw26I | GTCTC | 6 cut(s) | 202, 455, 894, 1435, 1828, 2347 |
| AlwI | GGATC | 3 cut(s) | 2, 1066, 1079 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 11 |
| Ama87I | CYCGRG | 3 cut(s) | 1217, 2807, 2845 |
| AoxI | GGCC | 6 cut(s) | 248, 352, 445, 761, 1321, 1959 |
| ApeKI | GCWGC | 8 cut(s) | 1301, 1952, 2018, 2576, 2744, 3034, 3110, 3131 |
| ApoI | RAATTY | 3 cut(s) | 126, 526, 2969 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2574, 2606 |
| AseI | ATTAAT | 1 cut(s) | 441 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1104 |
| AspLEI | GCGC | 3 cut(s) | 826, 1133, 2278 |
| AspS9I | GGNCC | 8 cut(s) | 641, 693, 762, 1091, 1321, 1331, 1912, 1960 |
| AsuC2I | CCSGG | 3 cut(s) | 2808, 2809, 2910 |
| AsuII | TTCGAA | 1 cut(s) | 235 |
| AsuNHI | GCTAGC | 2 cut(s) | 14, 1462 |
| AvaI | CYCGRG | 3 cut(s) | 1217, 2807, 2845 |
| AvaII | GGWCC | 5 cut(s) | 641, 693, 1091, 1331, 1912 |
| AxyI | CCTNAGG | 1 cut(s) | 2640 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2689, 2722 |
| BamHI | GGATCC | 1 cut(s) | 1071 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1390, 1422, 2913, 2945 |
| BauI | CACGAG | 1 cut(s) | 513 |
| BbsI | GAAGAC | 6 cut(s) | 883, 1725, 2423, 2766, 2793, 2808 |
| BbvCI | CCTCAGC | 3 cut(s) | 330, 2022, 3114 |
| BbvI | GCAGC | 8 cut(s) | 1313, 1964, 2005, 2563, 2756, 3021, 3097, 3143 |
| BccI | CCATC | 9 cut(s) | 581, 692, 707, 1013, 1178, 1364, 1556, 2236, 2606 |
| BceAI | ACGGC | 1 cut(s) | 432 |
| BciT130I | CCWGG | 5 cut(s) | 213, 1363, 1971, 2181, 2462 |
| BclI | TGATCA | 1 cut(s) | 1834 |
| BcnI | CCSGG | 3 cut(s) | 2808, 2809, 2910 |
| BcoDI | GTCTC | 6 cut(s) | 202, 455, 894, 1435, 1828, 2347 |
| BfmI | CTRYAG | 4 cut(s) | 427, 1299, 2139, 2205 |
| BfrI | CTTAAG | 3 cut(s) | 356, 2411, 3038 |
| BfuAI | ACCTGC | 1 cut(s) | 3115 |
| BglII | AGATCT | 3 cut(s) | 687, 1213, 2330 |
| BisI | GCNGC | 9 cut(s) | 248, 1302, 1953, 2019, 2577, 2745, 3035, 3111, 3132 |
| BlsI | GCNGC | 9 cut(s) | 249, 1303, 1954, 2020, 2578, 2746, 3036, 3112, 3133 |
| Bme1390I | CCNGG | 8 cut(s) | 213, 1363, 1971, 2181, 2462, 2808, 2809, 2910 |
| Bme18I | GGWCC | 5 cut(s) | 641, 693, 1091, 1331, 1912 |
| BmeT110I | CYCGRG | 3 cut(s) | 1217, 2807, 2845 |
| BmgT120I | GGNCC | 8 cut(s) | 641, 693, 762, 1091, 1321, 1331, 1912, 1960 |
| BmiI | GGNNCC | 3 cut(s) | 73, 1073, 1962 |
| BmrFI | CCNGG | 8 cut(s) | 213, 1363, 1971, 2181, 2462, 2808, 2809, 2910 |
| BmrI | ACTGGG | 1 cut(s) | 70 |
| BmsI | GCATC | 4 cut(s) | 1702, 1818, 1984, 2479 |
| BmtI | GCTAGC | 2 cut(s) | 18, 1466 |
| BmuI | ACTGGG | 1 cut(s) | 70 |
| BoxI | GACNNNNGTC | 1 cut(s) | 906 |
| BpiI | GAAGAC | 6 cut(s) | 883, 1725, 2423, 2766, 2793, 2808 |
| BpmI | CTGGAG | 1 cut(s) | 1848 |
| Bpu10I | CCTNAGC | 4 cut(s) | 330, 1849, 2022, 3114 |
| Bpu14I | TTCGAA | 1 cut(s) | 235 |
| BpuEI | CTTGAG | 4 cut(s) | 2180, 2421, 2478, 2664 |
| BpuMI | CCSGG | 3 cut(s) | 2808, 2809, 2910 |
| BsaBI | GATNNNNATC | 3 cut(s) | 792, 1410, 2194 |
| BsaI | GGTCTC | 3 cut(s) | 455, 1828, 2347 |
| BsaWI | WCCGGW | 1 cut(s) | 1722 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1232, 1262 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 495, 496, 1081, 1100, 1819, 1970, 2074, 2812 |
| Bse1I | ACTGG | 5 cut(s) | 76, 1073, 1093, 1324, 1914 |
| Bse21I | CCTNAGG | 1 cut(s) | 2640 |
| Bse3DI | GCAATG | 1 cut(s) | 483 |
| Bse8I | GATNNNNATC | 3 cut(s) | 792, 1410, 2194 |
| BseBI | CCWGG | 5 cut(s) | 213, 1363, 1971, 2181, 2462 |
| BseGI | GGATG | 4 cut(s) | 751, 1717, 1809, 2228 |
| BseJI | GATNNNNATC | 3 cut(s) | 792, 1410, 2194 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 495, 496, 1081, 1100, 1819, 1970, 2074, 2812 |
| BseMI | GCAATG | 1 cut(s) | 483 |
| BseMII | CTCAG | 8 cut(s) | 321, 549, 1863, 1937, 2013, 2631, 2847, 3105 |
| BseNI | ACTGG | 5 cut(s) | 76, 1073, 1093, 1324, 1914 |
| BseXI | GCAGC | 8 cut(s) | 1313, 1964, 2005, 2563, 2756, 3021, 3097, 3143 |
| BseYI | CCCAGC | 2 cut(s) | 1699, 3092 |
| BsgI | GTGCAG | 2 cut(s) | 600, 2590 |
| Bsh1236I | CGCG | 1 cut(s) | 1133 |
| BshFI | GGCC | 6 cut(s) | 250, 354, 447, 763, 1323, 1961 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1217, 2807, 2845 |
| BsiSI | CCGG | 3 cut(s) | 1723, 2808, 2909 |
| BslFI | GGGAC | 1 cut(s) | 1716 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 495, 496, 1081, 1100, 1819, 1970, 2074, 2812 |
| BsmAI | GTCTC | 6 cut(s) | 202, 455, 894, 1435, 1828, 2347 |
| BsmBI | CGTCTC | 1 cut(s) | 202 |
| BsmFI | GGGAC | 1 cut(s) | 1716 |
| BsmI | GAATGC | 2 cut(s) | 119, 1138 |
| BsnI | GGCC | 6 cut(s) | 250, 354, 447, 763, 1323, 1961 |
| Bso31I | GGTCTC | 3 cut(s) | 455, 1828, 2347 |
| BsoBI | CYCGRG | 3 cut(s) | 1217, 2807, 2845 |
| Bsp119I | TTCGAA | 1 cut(s) | 235 |
| Bsp19I | CCATGG | 1 cut(s) | 1518 |
| BspACI | CCGC | 3 cut(s) | 247, 1284, 2872 |
| BspANI | GGCC | 6 cut(s) | 250, 354, 447, 763, 1323, 1961 |
| BspCNI | CTCAG | 8 cut(s) | 322, 548, 1862, 1938, 2014, 2632, 2846, 3106 |
| BspFNI | CGCG | 1 cut(s) | 1133 |
| BspLI | GGNNCC | 3 cut(s) | 73, 1073, 1962 |
| BspMAI | CTGCAG | 1 cut(s) | 1303 |
| BspMI | ACCTGC | 1 cut(s) | 3115 |
| BspOI | GCTAGC | 2 cut(s) | 18, 1466 |
| BspPI | GGATC | 3 cut(s) | 2, 1066, 1079 |
| BspT104I | TTCGAA | 1 cut(s) | 235 |
| BspTI | CTTAAG | 3 cut(s) | 356, 2411, 3038 |
| BspTNI | GGTCTC | 3 cut(s) | 455, 1828, 2347 |
| BsrDI | GCAATG | 1 cut(s) | 483 |
| BsrI | ACTGG | 5 cut(s) | 76, 1073, 1093, 1324, 1914 |
| BssSI | CACGAG | 1 cut(s) | 513 |
| BssT1I | CCWWGG | 5 cut(s) | 758, 765, 1235, 1518, 2760 |
| Bst2BI | CACGAG | 1 cut(s) | 513 |
| Bst2UI | CCWGG | 5 cut(s) | 213, 1363, 1971, 2181, 2462 |
| Bst4CI | ACNGT | 9 cut(s) | 293, 428, 1248, 1486, 1863, 2370, 2408, 2654, 3050 |
| Bst6I | CTCTTC | 4 cut(s) | 282, 1438, 1675, 2619 |
| BstAFI | CTTAAG | 3 cut(s) | 356, 2411, 3038 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 11, 56, 3074 |
| BstBI | TTCGAA | 1 cut(s) | 235 |
| BstC8I | GCNNGC | 4 cut(s) | 16, 352, 1282, 1464 |
| BstDSI | CCRYGG | 2 cut(s) | 1518, 2366 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1098 |
| BstF5I | GGATG | 4 cut(s) | 751, 1717, 1809, 2228 |
| BstFNI | CGCG | 1 cut(s) | 1133 |
| BstHHI | GCGC | 3 cut(s) | 826, 1133, 2278 |
| BstMAI | GTCTC | 6 cut(s) | 202, 455, 894, 1435, 1828, 2347 |
| BstNI | CCWGG | 5 cut(s) | 213, 1363, 1971, 2181, 2462 |
| BstNSI | RCATGY | 9 cut(s) | 821, 963, 981, 1128, 1284, 1470, 1626, 1766, 2528 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 906 |
| BstSCI | CCNGG | 8 cut(s) | 211, 1361, 1969, 2179, 2460, 2806, 2807, 2908 |
| BstSFI | CTRYAG | 4 cut(s) | 427, 1299, 2139, 2205 |
| BstUI | CGCG | 1 cut(s) | 1133 |
| BstV1I | GCAGC | 8 cut(s) | 1313, 1964, 2005, 2563, 2756, 3021, 3097, 3143 |
| BstV2I | GAAGAC | 6 cut(s) | 883, 1725, 2423, 2766, 2793, 2808 |
| BstX2I | RGATCY | 5 cut(s) | 7, 687, 1071, 1213, 2330 |
| BstYI | RGATCY | 5 cut(s) | 7, 687, 1071, 1213, 2330 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2640 |
| BsuRI | GGCC | 6 cut(s) | 250, 354, 447, 763, 1323, 1961 |
| BtgI | CCRYGG | 2 cut(s) | 1518, 2366 |
| BtsCI | GGATG | 4 cut(s) | 751, 1717, 1809, 2228 |
| BtsI | GCAGTG | 1 cut(s) | 1527 |
| BtsIMutI | CAGTG | 5 cut(s) | 528, 1066, 1527, 1943, 2659 |
| BveI | ACCTGC | 1 cut(s) | 3115 |
| Cac8I | GCNNGC | 4 cut(s) | 16, 352, 1282, 1464 |
| CaiI | CAGNNNCTG | 1 cut(s) | 11 |
| CfoI | GCGC | 3 cut(s) | 826, 1133, 2278 |
| Cfr13I | GGNCC | 8 cut(s) | 641, 693, 762, 1091, 1321, 1331, 1912, 1960 |
| Cfr9I | CCCGGG | 1 cut(s) | 2807 |
| CsiI | ACCWGGT | 1 cut(s) | 2460 |
| Csp6I | GTAC | 8 cut(s) | 157, 396, 1023, 1244, 1571, 1583, 2676, 3104 |
| CviQI | GTAC | 8 cut(s) | 157, 396, 1023, 1244, 1571, 1583, 2676, 3104 |
| DraIII | CACNNNGTG | 1 cut(s) | 1985 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1044 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1044 |
| EaeI | YGGCCR | 2 cut(s) | 248, 445 |
| Eam1104I | CTCTTC | 4 cut(s) | 282, 1438, 1675, 2619 |
| EarI | CTCTTC | 4 cut(s) | 282, 1438, 1675, 2619 |
| Eco130I | CCWWGG | 5 cut(s) | 758, 765, 1235, 1518, 2760 |
| Eco31I | GGTCTC | 3 cut(s) | 455, 1828, 2347 |
| Eco47I | GGWCC | 5 cut(s) | 641, 693, 1091, 1331, 1912 |
| Eco57I | CTGAAG | 5 cut(s) | 203, 1091, 2495, 2706, 3077 |
| Eco81I | CCTNAGG | 1 cut(s) | 2640 |
| Eco88I | CYCGRG | 3 cut(s) | 1217, 2807, 2845 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1098 |
| EcoO109I | RGGNCCY | 1 cut(s) | 762 |
| EcoRI | GAATTC | 1 cut(s) | 526 |
| EcoRII | CCWGG | 5 cut(s) | 211, 1361, 1969, 2179, 2460 |
| EcoT14I | CCWWGG | 5 cut(s) | 758, 765, 1235, 1518, 2760 |
| EcoT22I | ATGCAT | 1 cut(s) | 1811 |
| ErhI | CCWWGG | 5 cut(s) | 758, 765, 1235, 1518, 2760 |
| Esp3I | CGTCTC | 1 cut(s) | 202 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 248, 280, 2320, 2352 |
| FaqI | GGGAC | 1 cut(s) | 1716 |
| FauNDI | CATATG | 1 cut(s) | 1534 |
| FbaI | TGATCA | 1 cut(s) | 1834 |
| FblI | GTMKAC | 4 cut(s) | 391, 1858, 2171, 3085 |
| Fnu4HI | GCNGC | 9 cut(s) | 248, 1302, 1953, 2019, 2577, 2745, 3035, 3111, 3132 |
| FokI | GGATG | 4 cut(s) | 758, 1724, 1796, 2215 |
| Fsp4HI | GCNGC | 9 cut(s) | 248, 1302, 1953, 2019, 2577, 2745, 3035, 3111, 3132 |
| GlaI | GCGC | 3 cut(s) | 825, 1132, 2277 |
| GluI | GCNGC | 9 cut(s) | 248, 1302, 1953, 2019, 2577, 2745, 3035, 3111, 3132 |
| GsaI | CCCAGC | 2 cut(s) | 1703, 3096 |
| GsuI | CTGGAG | 1 cut(s) | 1848 |
| HaeIII | GGCC | 6 cut(s) | 250, 354, 447, 763, 1323, 1961 |
| HapII | CCGG | 3 cut(s) | 1723, 2808, 2909 |
| HhaI | GCGC | 3 cut(s) | 826, 1133, 2278 |
| Hin6I | GCGC | 3 cut(s) | 824, 1131, 2276 |
| HinP1I | GCGC | 3 cut(s) | 824, 1131, 2276 |
| HincII | GTYRAC | 3 cut(s) | 1859, 2172, 3053 |
| HindII | GTYRAC | 3 cut(s) | 1859, 2172, 3053 |
| HindIII | AAGCTT | 2 cut(s) | 110, 2719 |
| HpaII | CCGG | 3 cut(s) | 1723, 2808, 2909 |
| HpyAV | CCTTC | 7 cut(s) | 462, 1094, 1689, 2211, 2939, 3052, 3150 |
| HpyCH4III | ACNGT | 9 cut(s) | 293, 428, 1248, 1486, 1863, 2370, 2408, 2654, 3050 |
| HpyCH4IV | ACGT | 4 cut(s) | 385, 394, 553, 992 |
| HpySE526I | ACGT | 4 cut(s) | 385, 394, 553, 992 |
| HspAI | GCGC | 3 cut(s) | 824, 1131, 2276 |
| Ksp22I | TGATCA | 1 cut(s) | 1834 |
| LmnI | GCTCC | 2 cut(s) | 1187, 1829 |
| Lsp1109I | GCAGC | 8 cut(s) | 1313, 1964, 2005, 2563, 2756, 3021, 3097, 3143 |
| LweI | GCATC | 4 cut(s) | 1702, 1818, 1984, 2479 |
| MabI | ACCWGGT | 1 cut(s) | 2460 |
| MaeII | ACGT | 4 cut(s) | 385, 394, 553, 992 |
| MaeIII | GTNAC | 5 cut(s) | 431, 829, 1084, 1373, 2920 |
| MflI | RGATCY | 5 cut(s) | 7, 687, 1071, 1213, 2330 |
| MlyI | GAGTC | 3 cut(s) | 428, 2428, 2780 |
| MmeI | TCCRAC | 1 cut(s) | 1757 |
| Mph1103I | ATGCAT | 1 cut(s) | 1811 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1104 |
| MslI | CAYNNNNRTG | 5 cut(s) | 978, 1710, 1920, 2484, 2523 |
| MspA1I | CMGCKG | 1 cut(s) | 227 |
| MspCI | CTTAAG | 3 cut(s) | 356, 2411, 3038 |
| MspI | CCGG | 3 cut(s) | 1723, 2808, 2909 |
| MspR9I | CCNGG | 8 cut(s) | 213, 1363, 1971, 2181, 2462, 2808, 2809, 2910 |
| Mva1269I | GAATGC | 2 cut(s) | 119, 1138 |
| MvaI | CCWGG | 5 cut(s) | 213, 1363, 1971, 2181, 2462 |
| MvnI | CGCG | 1 cut(s) | 1133 |
| NciI | CCSGG | 3 cut(s) | 2808, 2809, 2910 |
| NcoI | CCATGG | 1 cut(s) | 1518 |
| NdeI | CATATG | 1 cut(s) | 1534 |
| NheI | GCTAGC | 2 cut(s) | 14, 1462 |
| NlaIV | GGNNCC | 3 cut(s) | 73, 1073, 1962 |
| NmuCI | GTSAC | 2 cut(s) | 431, 1373 |
| NsiI | ATGCAT | 1 cut(s) | 1811 |
| NspI | RCATGY | 9 cut(s) | 821, 963, 981, 1128, 1284, 1470, 1626, 1766, 2528 |
| NspV | TTCGAA | 1 cut(s) | 235 |
| OliI | CACNNNNGTG | 1 cut(s) | 2484 |
| PaeI | GCATGC | 1 cut(s) | 1284 |
| PaeR7I | CTCGAG | 2 cut(s) | 1217, 2845 |
| PciI | ACATGT | 2 cut(s) | 817, 977 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 391 |
| PctI | GAATGC | 2 cut(s) | 119, 1138 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1104 |
| PflFI | GACNNNGTC | 1 cut(s) | 882 |
| PfoI | TCCNGGA | 1 cut(s) | 1969 |
| PkrI | GCNGC | 9 cut(s) | 249, 1303, 1954, 2020, 2578, 2746, 3036, 3112, 3133 |
| PleI | GAGTC | 3 cut(s) | 428, 2428, 2779 |
| PpsI | GAGTC | 3 cut(s) | 428, 2428, 2779 |
| PscI | ACATGT | 2 cut(s) | 817, 977 |
| PshAI | GACNNNNGTC | 1 cut(s) | 906 |
| PshBI | ATTAAT | 1 cut(s) | 441 |
| PsiI | TTATAA | 2 cut(s) | 1899, 2696 |
| Psp6I | CCWGG | 5 cut(s) | 211, 1361, 1969, 2179, 2460 |
| PspFI | CCCAGC | 2 cut(s) | 1699, 3092 |
| PspGI | CCWGG | 5 cut(s) | 211, 1361, 1969, 2179, 2460 |
| PspN4I | GGNNCC | 3 cut(s) | 73, 1073, 1962 |
| PspPI | GGNCC | 8 cut(s) | 641, 693, 762, 1091, 1321, 1331, 1912, 1960 |
| PstI | CTGCAG | 1 cut(s) | 1303 |
| PstNI | CAGNNNCTG | 1 cut(s) | 11 |
| PsuI | RGATCY | 5 cut(s) | 7, 687, 1071, 1213, 2330 |
| PsyI | GACNNNGTC | 1 cut(s) | 882 |
| PvuII | CAGCTG | 1 cut(s) | 227 |
| RsaI | GTAC | 8 cut(s) | 158, 397, 1024, 1245, 1572, 1584, 2677, 3105 |
| RsaNI | GTAC | 8 cut(s) | 157, 396, 1023, 1244, 1571, 1583, 2676, 3104 |
| RseI | CAYNNNNRTG | 5 cut(s) | 978, 1710, 1920, 2484, 2523 |
| SalI | GTCGAC | 2 cut(s) | 1857, 2170 |
| SatI | GCNGC | 9 cut(s) | 248, 1302, 1953, 2019, 2577, 2745, 3035, 3111, 3132 |
| Sau96I | GGNCC | 8 cut(s) | 641, 693, 762, 1091, 1321, 1331, 1912, 1960 |
| SchI | GAGTC | 3 cut(s) | 428, 2428, 2780 |
| ScrFI | CCNGG | 8 cut(s) | 213, 1363, 1971, 2181, 2462, 2808, 2809, 2910 |
| SexAI | ACCWGGT | 1 cut(s) | 2460 |
| SfaNI | GCATC | 4 cut(s) | 1702, 1818, 1984, 2479 |
| SfcI | CTRYAG | 4 cut(s) | 427, 1299, 2139, 2205 |
| Sfr274I | CTCGAG | 2 cut(s) | 1217, 2845 |
| SfuI | TTCGAA | 1 cut(s) | 235 |
| SinI | GGWCC | 5 cut(s) | 641, 693, 1091, 1331, 1912 |
| SlaI | CTCGAG | 2 cut(s) | 1217, 2845 |
| SmaI | CCCGGG | 1 cut(s) | 2809 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 978, 1710, 1920, 2484, 2523 |
| SmlI | CTYRAG | 9 cut(s) | 356, 1217, 2159, 2411, 2436, 2493, 2679, 2845, 3038 |
| SmoI | CTYRAG | 9 cut(s) | 356, 1217, 2159, 2411, 2436, 2493, 2679, 2845, 3038 |
| SphI | GCATGC | 1 cut(s) | 1284 |
| SsiI | CCGC | 3 cut(s) | 247, 1284, 2872 |
| SspI | AATATT | 1 cut(s) | 2561 |
| StyD4I | CCNGG | 8 cut(s) | 211, 1361, 1969, 2179, 2460, 2806, 2807, 2908 |
| StyI | CCWWGG | 5 cut(s) | 758, 765, 1235, 1518, 2760 |
| TaaI | ACNGT | 9 cut(s) | 293, 428, 1248, 1486, 1863, 2370, 2408, 2654, 3050 |
| TaiI | ACGT | 4 cut(s) | 388, 397, 556, 995 |
| TatI | WGTACW | 1 cut(s) | 1582 |
| TauI | GCSGC | 1 cut(s) | 250 |
| TscAI | CASTG | 5 cut(s) | 528, 1073, 1534, 1950, 2659 |
| TseFI | GTSAC | 2 cut(s) | 431, 1373 |
| TseI | GCWGC | 8 cut(s) | 1301, 1952, 2018, 2576, 2744, 3034, 3110, 3131 |
| Tsp45I | GTSAC | 2 cut(s) | 431, 1373 |
| TspDTI | ATGAA | 6 cut(s) | 153, 782, 1332, 2256, 2532, 2627 |
| TspGWI | ACGGA | 4 cut(s) | 184, 758, 1707, 2798 |
| TspMI | CCCGGG | 1 cut(s) | 2807 |
| TspRI | CASTG | 5 cut(s) | 528, 1073, 1534, 1950, 2659 |
| Tth111I | GACNNNGTC | 1 cut(s) | 882 |
| Vha464I | CTTAAG | 3 cut(s) | 356, 2411, 3038 |
| VpaK11BI | GGWCC | 5 cut(s) | 641, 693, 1091, 1331, 1912 |
| VspI | ATTAAT | 1 cut(s) | 441 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1098 |
| XapI | RAATTY | 3 cut(s) | 126, 526, 2969 |
| XbaI | TCTAGA | 1 cut(s) | 1346 |
| XceI | RCATGY | 9 cut(s) | 821, 963, 981, 1128, 1284, 1470, 1626, 1766, 2528 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1466 |
| XhoI | CTCGAG | 2 cut(s) | 1217, 2845 |
| XmaI | CCCGGG | 1 cut(s) | 2807 |
| XmiI | GTMKAC | 4 cut(s) | 391, 1858, 2171, 3085 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1104 |
| Zsp2I | ATGCAT | 1 cut(s) | 1811 |