Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006555

Physical Location & Seq

Genomic Coordinates Forward (+)

14812782 .. 14818091

Gene Structure 5310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g18810.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3192 bp

ATGAAGGCACTCATTGCATTAAAAAGAGGTTCCCAGTTAATCAAGTATAGCCGGAAAGGAAAGCCAAAACTTCATCCATTCAGAATTTCTACTGATGAAACTACACTAATCTGGTATTCACATGGAGAAGAACGTACTCTGAAATTAGCTTCTGTCTCTCGAATTATCCCCGGACAGAGAACAGCTGTGTTTAGAAGGTATTTGCGCCCAGAAAAGGATTACTTGTCATTTTCACTTCTATATAAGAACGGTGAACGAACACTTGATCTGATTTGCAAGGACAAAGCTGAGGCAGAGATATGGTTTGCTGGCCTTAAGGCGCTAATTACTTCAGGAAAAGAGCGTAGTAGACGTAGTCAGAGTGATATTTCTGATTTGCAAGACTCTGCTGAATCTGTTCACAGCCGTCCATTTGATGCGACCTTAGAGTTCACGTCAAGCATTGCCAGTGGTAGGGTATCCGTTGATTCTCCTGAATCAGTGAATTTGACAGGCTCAGATGTGGGTTCAGAACGTGCAAATATGCAACTAAGAACAAGTGCAGGAGATGGTTTTCGAATTAGTGTTTCAAGCACTCCTAGCTGTTCTAGTGGAGGGTCTGGACATGATGATATAGAATCACTAGGAGATGTTTATGTGTGGGGAGAGATCTGGTCTGATGGAAATGGACCTGATGGGTCTGCGAATTCAATCTCTAAAAAAATCGATGTGCTGATTCCAAAGCCCTTGGAGTCGAATGTTGTTCTCGATGTTCAGCAGATAGCTTGTGGTGTGCGACATGTTGCTCTTGTAACAAGGCAAGGGGAGGTTTTCACCTGGGGAGAGGAATCGGGTGGAAGACTCGGTCATGGGATTGATAGAGATTTTAGTCGTCCTCGCCTTGTTGAGTTCCTCGCAATTAATAACATTGAATTTGTTGCATGTGGTGAGTACCACACATGTGCTGTATCTACATCAGGTGATTTGTTTACGTGGGGTGATGGTACACATAATGCTGGACTTCTTGGTCTTGGAACTGATGTTAGCCACTGGATACCTAAAAGGGTTACTGGTCCTTTAGAAGGACTTCAGGTTCTATCTGTTGCATGTGGCACATGGCATTCAGCTTTAGCAACTTCGAATGGAAAGCTATTTACATTTGGAGATGGAGCGTTCGGTGTTTTGGGCCATGGAGATCGAGAGAGTGTTCCGTATCCAAGGGAGGTACAGTCGTTGAATGGACTAAAGACTATAAAAGTAGCATGCGGAGTTTGGCATACTGCAGCTATTGTAGAAGTTATGGGCCAGTCTGGTACAAATGCTTCATCGCGTAAGTTGTTCACCTGGGGCGATGGTGACAAACATCGTTTGGGTCACGAAATCAAGGAAACTTATCTGCTTCCCACCTGTGTCTCTTCACTTATCGACTATAATTTCCACCAGCTAGCATGTGGACACACTATGACTATTGCGCTCACCACATCAGGTCATGTGTTTACCATGGGCGGAACTGCATATGGCCAGCTAGGCAATCCAAGTTCTGTTGGGAAAGCACCTTGTTTAGTACAGGATCGATTGGTTGGTGAGTTTGTCGAAGAAATATCTTGTGGGTCATATCATGTTGCTGTCCTGACATCAAGAAGTGAAGTGTTCACTTGGGGAAAAGGTGCTAATGGAAGACTGGGACACGGGGACACAGAAGACCGGAAAACTCCAACTTTGGTTGAAGCCCTGAAAGATAGGCATGTGAAAAGCATATCGTGCGGCTCAAACTTCACAGCTAGTATATGCATCCATAAGTGGGTCTCTGGAGCTGATCAATCAATTTGCTCAGGTTGTCGACAGACATTTGGTTTTACTAGAAAGAGGCATAACTGTTATAACTGTGGACTAGTCCATTGCCATGCTTGTAGTTCCAAGAAAGCACTGAGGGCAGCTTTGGCCCCGACTCCTGGAAAACCTCATCGTGTATGTGATGCTTGTTATGCGAAACTTAAAGCTGCTGAAGCTGGTAATGCTTCCAGTGTCAATAGGAGATCTAGGGTCACACGCTCAATGGATAGCAGGGATTTACTAAGTAGAGTAGAGGTGAAATCTTCAAGGATTCTTCTCTCTCCCTCTATAGAACCCGTTATATACCTTGAGGTCAAGTCCATGAAGCCTGGTGGTGTTAGATCCGAATCCCCTTCTATAGTCAGGTCTTCCCAAGTTCCATCCCTTTTACAACTTAAAGATATTGCATTTCCAAGTTCGTTGAGTGCACTGCAAAACGCTTTGAAGCCTGTCATGACAACGCCATCTCAGCCCAATTCGAGATCTAATTCACCATATTCAAGGAGACCTAGTCCTCCCCGGTCTACAACTCCTATATTCTCTAGGAGTGTTATTGACAGTCTTAAGAGGACAAATGACACTCTGACACAAGAAGTATCAAAGTTGCAAAACCAGGTTAAAAGTCTGAAGCATAAGTGTGATGCTCAAGAGGTAGAGATAAAGAAACTACGTAAACATGCGAAAGAAGCTGGCTCATTAGCCGATGACCGATACTTGAAGTGCAGAGCTGCCAAAGAACTCGTCAAGTCCATCACGGAACAGATGAGGGAATGGGAAGACAAGATACCTCCTGAGATTTCTGACAGTGATACTTTCAAAGCATTGCGTACGCAAGCTGAGGATTTTATGAACATGAATATTGGAAGGCCAAGCTCAGAGCTTGACCAGCACTATGCAACCGATAGAACTTCCTTGGTTGTTGAGTCTTCTAGAATGGAAGACAACAAAGCAGAAGACTCTGCAGAGGCTGAACCGCAAAACAGCTCAGAAAACCACTCGAGGTCACCTGAATCATCAACGTTGCGGACGGTAGACAACAGATCAGAAGACTTTGCGGATGCTGGACCTCAAAACCGCTCAAGGTCACCAGAATCATCAATATCACGGACAGGACAAAAGGAAGTCATTGAACAATTTGAACCGGGCGTTTATGTAACTCTCCTTCAACTAAAAAATGGTATTCGGGTTTTTAAGCGTGTTAAATTCAGCAAACGGAAGTTTAATTCGGAACAGGCAGAAGCATGGTGGAAAAACAACAAAGATAGGCTGCTTAGGAGATATAGTCAGCCGAATGCAAGTCCTGCTCCGAGTGCACCACCACCCAGCAGTCCTATTCCGCCCGAGGAAAACAGCGAGGCAGCCGCAGCTTCCCCGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0008150 GO:0012505 GO:0016020 GO:0019899 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051020 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N FYVE PH_12 RCC1

Protein Analysis

1064

Amino Acids

116.43

Weight (kDa)

8.89

Isoelectric Point (pI)

53.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23270 AT3G23270 AT4G14368 AT4G14368 AT4G14368 AT4G14368
fragaria_vesca	FvH4_4g03710 FvH4_4g03710 FvH4_4g03710
malus_domestica	MD13G1214600.v1.1 MD16G1219800.v1.1
prunus_persica	Prupe.1G040100_v2.0.a1 Prupe.1G040100_v2.0.a1
pyrus_communis	pycom13g18810 pycom16g18300
rosa_chinensis	RchiOBHm_Chr4g0393321
rosa_laevigata	RLG00000009764
rosa_multiflora	Rmu_co8237059.1_g000001 Rmu_sc0001590.1_g000009
rosa_roxburghii	Rroxscaffold_5G00338310
rosa_rugosa	Rorug04G0001800
rosa_samantha	Rh4AG046700 Rh4BG042300 Rh4CG049800 Rh4DG044100
rosa_wichuraiana	Rw4G003690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1860
AasI	GACNNNNNNGTC	1 cut(s)	1005
AccBSI	CCGCTC	1 cut(s)	2889
AccI	GTMKAC	4 cut(s)	349, 1819, 2336, 2844
AccII	CGCG	1 cut(s)	1309
AciI	CCGC	9 cut(s)	1245, 1485, 1743, 2786, 2836, 2867, 2887, 3149, 3174
AclI	AACGTT	1 cut(s)	2831
AclWI	GGATC	2 cut(s)	1557, 2148
AcoI	YGGCCR	1 cut(s)	1498
AcsI	RAATTY	5 cut(s)	84, 484, 685, 911, 3014
AcuI	CTGAAG	4 cut(s)	315, 1052, 2004, 2459
AfaI	GTAC	7 cut(s)	136, 932, 985, 1206, 1294, 1545, 2641
AfiI	CCNNNNNNNGG	5 cut(s)	214, 453, 1061, 1780, 1931
AflII	CTTAAG	2 cut(s)	314, 2375
AflIII	ACRYGT	2 cut(s)	778, 938
AhlI	ACTAGT	1 cut(s)	1870
AjiI	CACGTC	1 cut(s)	435
AjnI	CCWGG	5 cut(s)	815, 1322, 1930, 2140, 2424
AleI	CACNNNNGTG	1 cut(s)	939
AloI	GAACNNNNNNTCC	2 cut(s)	1056, 1088
Alw21I	GWGCWC	2 cut(s)	2242, 3127
Alw26I	GTCTC	4 cut(s)	160, 1396, 1789, 2311
Alw44I	GTGCAC	2 cut(s)	2238, 3123
AlwI	GGATC	2 cut(s)	1557, 2148
AlwNI	CAGNNNCTG	1 cut(s)	2780
Ama87I	CYCGRG	2 cut(s)	2809, 3152
AoxI	GGCC	6 cut(s)	310, 1165, 1282, 1498, 1920, 2678
ApaLI	GTGCAC	2 cut(s)	2238, 3123
ApeKI	GCWGC	7 cut(s)	1262, 1913, 1979, 2540, 3079, 3170, 3176
ApoI	RAATTY	5 cut(s)	84, 484, 685, 911, 3014
ArsI	GACNNNNNNTTYG	2 cut(s)	2538, 2570
AseI	ATTAAT	1 cut(s)	900
Asp700I	GAANNNNTTC	2 cut(s)	396, 1065
AspLEI	GCGC	3 cut(s)	207, 322, 1453
AspS9I	GGNCC	6 cut(s)	668, 1052, 1165, 1282, 1921, 2876
AsuC2I	CCSGG	3 cut(s)	171, 2332, 2955
AsuII	TTCGAA	2 cut(s)	556, 1118
AsuNHI	GCTAGC	1 cut(s)	1423
AvaI	CYCGRG	2 cut(s)	2809, 3152
AvaII	GGWCC	3 cut(s)	668, 1052, 2876
BaeGI	GKGCMC	2 cut(s)	2242, 3127
BaeI	ACNNNNGTAYC	2 cut(s)	1196, 1229
BalI	TGGCCA	1 cut(s)	1500
BarI	GAAGNNNNNNTAC	6 cut(s)	1285, 1317, 2580, 2612, 2958, 2990
BbsI	GAAGAC	9 cut(s)	844, 1663, 1686, 2172, 2595, 2730, 2757, 2772, 2865
Bbv12I	GWGCWC	2 cut(s)	2242, 3127
BbvCI	CCTCAGC	2 cut(s)	288, 2649
BbvI	GCAGC	7 cut(s)	1274, 1925, 1966, 2527, 3066, 3182, 3188
BccI	CCATC	9 cut(s)	542, 653, 668, 974, 1139, 1325, 2200, 2284, 2570
BceAI	ACGGC	1 cut(s)	390
BciT130I	CCWGG	5 cut(s)	817, 1324, 1932, 2142, 2426
BciVI	GTATCC	3 cut(s)	469, 1026, 1203
BclI	TGATCA	1 cut(s)	1795
BcnI	CCSGG	3 cut(s)	171, 2332, 2955
BcoDI	GTCTC	4 cut(s)	160, 1396, 1789, 2311
BcuI	ACTAGT	1 cut(s)	1870
BfmI	CTRYAG	4 cut(s)	1260, 2100, 2169, 2772
BfoI	RGCGCY	1 cut(s)	323
BfrI	CTTAAG	2 cut(s)	314, 2375
BfuI	GTATCC	3 cut(s)	469, 1026, 1203
BglI	GCCNNNNNGGC	1 cut(s)	1506
BglII	AGATCT	3 cut(s)	648, 2015, 2294
BisI	GCNGC	9 cut(s)	1263, 1744, 1914, 1980, 2541, 3080, 3171, 3174, 3177
BlsI	GCNGC	9 cut(s)	1264, 1745, 1915, 1981, 2542, 3081, 3172, 3175, 3178
Bme1390I	CCNGG	8 cut(s)	171, 817, 1324, 1932, 2142, 2332, 2426, 2955
Bme18I	GGWCC	3 cut(s)	668, 1052, 2876
BmeT110I	CYCGRG	2 cut(s)	2809, 3152
BmgBI	CACGTC	1 cut(s)	435
BmgT120I	GGNCC	6 cut(s)	668, 1052, 1165, 1282, 1921, 2876
BmiI	GGNNCC	2 cut(s)	31, 1923
BmrFI	CCNGG	8 cut(s)	171, 817, 1324, 1932, 2142, 2332, 2426, 2955
BmrI	ACTGGG	2 cut(s)	28, 1670
BmsI	GCATC	5 cut(s)	406, 1779, 1945, 2443, 2860
BmtI	GCTAGC	1 cut(s)	1427
BmuI	ACTGGG	2 cut(s)	28, 1670
BpiI	GAAGAC	9 cut(s)	844, 1663, 1686, 2172, 2595, 2730, 2757, 2772, 2865
BpmI	CTGGAG	1 cut(s)	1809
Bpu10I	CCTNAGC	4 cut(s)	288, 1810, 2649, 3083
Bpu14I	TTCGAA	2 cut(s)	556, 1118
BpuEI	CTTGAG	3 cut(s)	2141, 2442, 2875
BpuMI	CCSGG	3 cut(s)	171, 2332, 2955
Bsa29I	ATCGAT	2 cut(s)	705, 1552
BsaAI	YACGTR	2 cut(s)	972, 2483
BsaBI	GATNNNNATC	1 cut(s)	2158
BsaI	GGTCTC	2 cut(s)	1789, 2311
BsaWI	WCCGGW	1 cut(s)	1683
BsaXI	ACNNNNNCTCC	6 cut(s)	1193, 1223, 2308, 2338, 3079, 3109
Bsc4I	CCNNNNNNNGG	5 cut(s)	214, 453, 1061, 1780, 1931
Bse1I	ACTGG	7 cut(s)	34, 447, 1034, 1054, 1285, 1665, 2001
Bse3DI	GCAATG	4 cut(s)	12, 441, 1876, 2633
Bse8I	GATNNNNATC	1 cut(s)	2158
BseBI	CCWGG	5 cut(s)	817, 1324, 1932, 2142, 2426
BseCI	ATCGAT	2 cut(s)	705, 1552
BseGI	GGATG	4 cut(s)	73, 1770, 2192, 2875
BseJI	GATNNNNATC	1 cut(s)	2158
BseLI	CCNNNNNNNGG	5 cut(s)	214, 453, 1061, 1780, 1931
BseMI	GCAATG	4 cut(s)	12, 441, 1876, 2633
BseMII	CTCAG	9 cut(s)	279, 510, 1824, 1898, 2294, 2595, 2640, 2700, 2811
BseNI	ACTGG	7 cut(s)	34, 447, 1034, 1054, 1285, 1665, 2001
BseSI	GKGCMC	2 cut(s)	2242, 3127
BseXI	GCAGC	7 cut(s)	1274, 1925, 1966, 2527, 3066, 3182, 3188
BseYI	CCCAGC	1 cut(s)	3134
BsgI	GTGCAG	2 cut(s)	561, 2554
Bsh1236I	CGCG	1 cut(s)	1309
BshFI	GGCC	6 cut(s)	312, 1167, 1284, 1500, 1922, 2680
BshVI	ATCGAT	2 cut(s)	705, 1552
BsiHKAI	GWGCWC	2 cut(s)	2242, 3127
BsiHKCI	CYCGRG	2 cut(s)	2809, 3152
BsiSI	CCGG	5 cut(s)	52, 171, 1684, 2332, 2954
BsiWI	CGTACG	1 cut(s)	2639
BslFI	GGGAC	2 cut(s)	1677, 1685
BslI	CCNNNNNNNGG	5 cut(s)	214, 453, 1061, 1780, 1931
BsmAI	GTCTC	4 cut(s)	160, 1396, 1789, 2311
BsmFI	GGGAC	2 cut(s)	1677, 1685
BsmI	GAATGC	2 cut(s)	1099, 3109
BsnI	GGCC	6 cut(s)	312, 1167, 1284, 1500, 1922, 2680
Bso31I	GGTCTC	2 cut(s)	1789, 2311
BsoBI	CYCGRG	2 cut(s)	2809, 3152
Bsp119I	TTCGAA	2 cut(s)	556, 1118
Bsp1286I	GDGCHC	2 cut(s)	2242, 3127
Bsp143I	GATC	9 cut(s)	265, 648, 1174, 1549, 1795, 2015, 2153, 2294, 2852
Bsp19I	CCATGG	2 cut(s)	1168, 1479
BspACI	CCGC	9 cut(s)	1245, 1485, 1743, 2786, 2836, 2867, 2887, 3149, 3174
BspANI	GGCC	6 cut(s)	312, 1167, 1284, 1500, 1922, 2680
BspCNI	CTCAG	9 cut(s)	280, 509, 1823, 1899, 2293, 2596, 2641, 2699, 2810
BspDI	ATCGAT	2 cut(s)	705, 1552
BspFNI	CGCG	1 cut(s)	1309
BspHI	TCATGA	1 cut(s)	2265
BspLI	GGNNCC	2 cut(s)	31, 1923
BspMAI	CTGCAG	2 cut(s)	1264, 2776
BspOI	GCTAGC	1 cut(s)	1427
BspPI	GGATC	2 cut(s)	1557, 2148
BspT104I	TTCGAA	2 cut(s)	556, 1118
BspTI	CTTAAG	2 cut(s)	314, 2375
BspTNI	GGTCTC	2 cut(s)	1789, 2311
BsrBI	CCGCTC	1 cut(s)	2889
BsrDI	GCAATG	4 cut(s)	12, 441, 1876, 2633
BsrI	ACTGG	7 cut(s)	34, 447, 1034, 1054, 1285, 1665, 2001
BssMI	GATC	9 cut(s)	265, 648, 1174, 1549, 1795, 2015, 2153, 2294, 2852
BssT1I	CCWWGG	5 cut(s)	726, 1168, 1196, 1479, 2724
Bst2UI	CCWGG	5 cut(s)	817, 1324, 1932, 2142, 2426
Bst4CI	ACNGT	7 cut(s)	251, 1209, 1856, 1865, 2372, 2618, 2842
Bst6I	CTCTTC	1 cut(s)	1399
BstAFI	CTTAAG	2 cut(s)	314, 2375
BstAPI	GCANNNNNTGC	3 cut(s)	14, 1740, 3113
BstBAI	YACGTR	2 cut(s)	972, 2483
BstBI	TTCGAA	2 cut(s)	556, 1118
BstC8I	GCNNGC	6 cut(s)	310, 1243, 1425, 1502, 2503, 2646
BstDSI	CCRYGG	2 cut(s)	1168, 1479
BstEII	GGTNACC	2 cut(s)	2814, 2895
BstENI	CCTNNNNNAGG	1 cut(s)	1059
BstF5I	GGATG	4 cut(s)	73, 1770, 2192, 2875
BstFNI	CGCG	1 cut(s)	1309
BstH2I	RGCGCY	1 cut(s)	323
BstHHI	GCGC	3 cut(s)	207, 322, 1453
BstKTI	GATC	9 cut(s)	268, 651, 1177, 1552, 1798, 2018, 2156, 2297, 2855
BstMAI	GTCTC	4 cut(s)	160, 1396, 1789, 2311
BstMBI	GATC	9 cut(s)	265, 648, 1174, 1549, 1795, 2015, 2153, 2294, 2852
BstNI	CCWGG	5 cut(s)	817, 1324, 1932, 2142, 2426
BstNSI	RCATGY	8 cut(s)	782, 924, 942, 1089, 1245, 1431, 1727, 2492
BstPI	GGTNACC	2 cut(s)	2814, 2895
BstSCI	CCNGG	8 cut(s)	169, 815, 1322, 1930, 2140, 2330, 2424, 2953
BstSFI	CTRYAG	4 cut(s)	1260, 2100, 2169, 2772
BstSLI	GKGCMC	2 cut(s)	2242, 3127
BstSNI	TACGTA	1 cut(s)	2483
BstUI	CGCG	1 cut(s)	1309
BstV1I	GCAGC	7 cut(s)	1274, 1925, 1966, 2527, 3066, 3182, 3188
BstV2I	GAAGAC	9 cut(s)	844, 1663, 1686, 2172, 2595, 2730, 2757, 2772, 2865
BstX2I	RGATCY	4 cut(s)	648, 2015, 2153, 2294
BstYI	RGATCY	4 cut(s)	648, 2015, 2153, 2294
Bsu15I	ATCGAT	2 cut(s)	705, 1552
BsuI	GTATCC	3 cut(s)	469, 1026, 1203
BsuRI	GGCC	6 cut(s)	312, 1167, 1284, 1500, 1922, 2680
BsuTUI	ATCGAT	2 cut(s)	705, 1552
BtgI	CCRYGG	2 cut(s)	1168, 1479
BtgZI	GCGATG	2 cut(s)	1290, 1344
BtrI	CACGTC	1 cut(s)	435
BtsCI	GGATG	4 cut(s)	73, 1770, 2192, 2875
BtsI	GCAGTG	1 cut(s)	2240
BtsIMutI	CAGTG	7 cut(s)	454, 486, 1027, 1904, 2008, 2240, 2623
Cac8I	GCNNGC	6 cut(s)	310, 1243, 1425, 1502, 2503, 2646
CaiI	CAGNNNCTG	1 cut(s)	2780
CciI	TCATGA	1 cut(s)	2265
CfoI	GCGC	3 cut(s)	207, 322, 1453
Cfr13I	GGNCC	6 cut(s)	668, 1052, 1165, 1282, 1921, 2876
ClaI	ATCGAT	2 cut(s)	705, 1552
CsiI	ACCWGGT	1 cut(s)	2424
Csp6I	GTAC	7 cut(s)	135, 931, 984, 1205, 1293, 1544, 2640
CviQI	GTAC	7 cut(s)	135, 931, 984, 1205, 1293, 1544, 2640
DpnI	GATC	9 cut(s)	267, 650, 1176, 1551, 1797, 2017, 2155, 2296, 2854
DpnII	GATC	9 cut(s)	265, 648, 1174, 1549, 1795, 2015, 2153, 2294, 2852
DrdI	GACNNNNNNGTC	1 cut(s)	1005
DseDI	GACNNNNNNGTC	1 cut(s)	1005
EaeI	YGGCCR	1 cut(s)	1498
Eam1104I	CTCTTC	1 cut(s)	1399
EarI	CTCTTC	1 cut(s)	1399
EciI	GGCGGA	2 cut(s)	1500, 3138
Eco105I	TACGTA	1 cut(s)	2483
Eco130I	CCWWGG	5 cut(s)	726, 1168, 1196, 1479, 2724
Eco31I	GGTCTC	2 cut(s)	1789, 2311
Eco47I	GGWCC	3 cut(s)	668, 1052, 2876
Eco57I	CTGAAG	4 cut(s)	315, 1052, 2004, 2459
Eco88I	CYCGRG	2 cut(s)	2809, 3152
Eco91I	GGTNACC	2 cut(s)	2814, 2895
EcoNI	CCTNNNNNAGG	1 cut(s)	1059
EcoO65I	GGTNACC	2 cut(s)	2814, 2895
EcoRI	GAATTC	1 cut(s)	685
EcoRII	CCWGG	5 cut(s)	815, 1322, 1930, 2140, 2424
EcoT14I	CCWWGG	5 cut(s)	726, 1168, 1196, 1479, 2724
EcoT22I	ATGCAT	1 cut(s)	1772
ErhI	CCWWGG	5 cut(s)	726, 1168, 1196, 1479, 2724
FalI	AAGNNNNNCTT	2 cut(s)	206, 238
FaqI	GGGAC	2 cut(s)	1677, 1685
FauNDI	CATATG	1 cut(s)	1495
FbaI	TGATCA	1 cut(s)	1795
FblI	GTMKAC	4 cut(s)	349, 1819, 2336, 2844
Fnu4HI	GCNGC	9 cut(s)	1263, 1744, 1914, 1980, 2541, 3080, 3171, 3174, 3177
FokI	GGATG	4 cut(s)	60, 1757, 2179, 2882
Fsp4HI	GCNGC	9 cut(s)	1263, 1744, 1914, 1980, 2541, 3080, 3171, 3174, 3177
GlaI	GCGC	3 cut(s)	206, 321, 1452
GluI	GCNGC	9 cut(s)	1263, 1744, 1914, 1980, 2541, 3080, 3171, 3174, 3177
GsaI	CCCAGC	1 cut(s)	3138
GsuI	CTGGAG	1 cut(s)	1809
HaeII	RGCGCY	1 cut(s)	323
HaeIII	GGCC	6 cut(s)	312, 1167, 1284, 1500, 1922, 2680
HapII	CCGG	5 cut(s)	52, 171, 1684, 2332, 2954
HhaI	GCGC	3 cut(s)	207, 322, 1453
Hin6I	GCGC	3 cut(s)	205, 320, 1451
HinP1I	GCGC	3 cut(s)	205, 320, 1451
HincII	GTYRAC	1 cut(s)	1820
HindII	GTYRAC	1 cut(s)	1820
HpaII	CCGG	5 cut(s)	52, 171, 1684, 2332, 2954
HpyAV	CCTTC	5 cut(s)	189, 1055, 2175, 2670, 2984
HpyCH4III	ACNGT	7 cut(s)	251, 1209, 1856, 1865, 2372, 2618, 2842
HpyCH4IV	ACGT	7 cut(s)	133, 352, 434, 514, 971, 2482, 2831
HpySE526I	ACGT	7 cut(s)	133, 352, 434, 514, 971, 2482, 2831
HspAI	GCGC	3 cut(s)	205, 320, 1451
Ksp22I	TGATCA	1 cut(s)	1795
Kzo9I	GATC	9 cut(s)	265, 648, 1174, 1549, 1795, 2015, 2153, 2294, 2852
LmnI	GCTCC	3 cut(s)	1148, 1790, 3121
Lsp1109I	GCAGC	7 cut(s)	1274, 1925, 1966, 2527, 3066, 3182, 3188
LweI	GCATC	5 cut(s)	406, 1779, 1945, 2443, 2860
MabI	ACCWGGT	1 cut(s)	2424
MaeII	ACGT	7 cut(s)	133, 352, 434, 514, 971, 2482, 2831
MaeIII	GTNAC	8 cut(s)	790, 1045, 1334, 1352, 2023, 2814, 2895, 2965
MalI	GATC	9 cut(s)	267, 650, 1176, 1551, 1797, 2017, 2155, 2296, 2854
MbiI	CCGCTC	1 cut(s)	2889
MboI	GATC	9 cut(s)	265, 648, 1174, 1549, 1795, 2015, 2153, 2294, 2852
MflI	RGATCY	4 cut(s)	648, 2015, 2153, 2294
MhlI	GDGCHC	2 cut(s)	2242, 3127
MlsI	TGGCCA	1 cut(s)	1500
MluNI	TGGCCA	1 cut(s)	1500
MlyI	GAGTC	6 cut(s)	377, 740, 834, 1921, 2744, 2762
MmeI	TCCRAC	1 cut(s)	1718
Mox20I	TGGCCA	1 cut(s)	1500
Mph1103I	ATGCAT	1 cut(s)	1772
MroXI	GAANNNNTTC	2 cut(s)	396, 1065
MscI	TGGCCA	1 cut(s)	1500
MslI	CAYNNNNRTG	3 cut(s)	939, 1881, 2448
Msp20I	TGGCCA	1 cut(s)	1500
MspA1I	CMGCKG	1 cut(s)	185
MspCI	CTTAAG	2 cut(s)	314, 2375
MspI	CCGG	5 cut(s)	52, 171, 1684, 2332, 2954
MspR9I	CCNGG	8 cut(s)	171, 817, 1324, 1932, 2142, 2332, 2426, 2955
Mva1269I	GAATGC	2 cut(s)	1099, 3109
MvaI	CCWGG	5 cut(s)	817, 1324, 1932, 2142, 2426
MvnI	CGCG	1 cut(s)	1309
NciI	CCSGG	3 cut(s)	171, 2332, 2955
NcoI	CCATGG	2 cut(s)	1168, 1479
NdeI	CATATG	1 cut(s)	1495
NdeII	GATC	9 cut(s)	265, 648, 1174, 1549, 1795, 2015, 2153, 2294, 2852
NheI	GCTAGC	1 cut(s)	1423
NlaIV	GGNNCC	2 cut(s)	31, 1923
NmuCI	GTSAC	5 cut(s)	1334, 1352, 2023, 2814, 2895
NsiI	ATGCAT	1 cut(s)	1772
NspI	RCATGY	8 cut(s)	782, 924, 942, 1089, 1245, 1431, 1727, 2492
NspV	TTCGAA	2 cut(s)	556, 1118
OliI	CACNNNNGTG	1 cut(s)	939
PaeI	GCATGC	1 cut(s)	1245
PaeR7I	CTCGAG	1 cut(s)	2809
PagI	TCATGA	1 cut(s)	2265
PciI	ACATGT	2 cut(s)	778, 938
PctI	GAATGC	2 cut(s)	1099, 3109
PdmI	GAANNNNTTC	2 cut(s)	396, 1065
Pfl23II	CGTACG	1 cut(s)	2639
PflFI	GACNNNGTC	3 cut(s)	354, 843, 2322
PfoI	TCCNGGA	1 cut(s)	1930
PkrI	GCNGC	9 cut(s)	1264, 1745, 1915, 1981, 2542, 3081, 3172, 3175, 3178
PleI	GAGTC	6 cut(s)	377, 739, 834, 1921, 2743, 2762
PpsI	GAGTC	6 cut(s)	377, 739, 834, 1921, 2743, 2762
Ppu21I	YACGTR	2 cut(s)	972, 2483
PscI	ACATGT	2 cut(s)	778, 938
PshBI	ATTAAT	1 cut(s)	900
PsiI	TTATAA	1 cut(s)	1860
Psp1406I	AACGTT	1 cut(s)	2831
Psp6I	CCWGG	5 cut(s)	815, 1322, 1930, 2140, 2424
PspEI	GGTNACC	2 cut(s)	2814, 2895
PspFI	CCCAGC	1 cut(s)	3134
PspGI	CCWGG	5 cut(s)	815, 1322, 1930, 2140, 2424
PspLI	CGTACG	1 cut(s)	2639
PspN4I	GGNNCC	2 cut(s)	31, 1923
PspPI	GGNCC	6 cut(s)	668, 1052, 1165, 1282, 1921, 2876
PspXI	VCTCGAGB	1 cut(s)	2809
PstI	CTGCAG	2 cut(s)	1264, 2776
PstNI	CAGNNNCTG	1 cut(s)	2780
PsuI	RGATCY	4 cut(s)	648, 2015, 2153, 2294
PsyI	GACNNNGTC	3 cut(s)	354, 843, 2322
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	7 cut(s)	136, 932, 985, 1206, 1294, 1545, 2641
RsaNI	GTAC	7 cut(s)	135, 931, 984, 1205, 1293, 1544, 2640
RseI	CAYNNNNRTG	3 cut(s)	939, 1881, 2448
SalI	GTCGAC	1 cut(s)	1818
SatI	GCNGC	9 cut(s)	1263, 1744, 1914, 1980, 2541, 3080, 3171, 3174, 3177
Sau3AI	GATC	9 cut(s)	265, 648, 1174, 1549, 1795, 2015, 2153, 2294, 2852
Sau96I	GGNCC	6 cut(s)	668, 1052, 1165, 1282, 1921, 2876
SchI	GAGTC	6 cut(s)	377, 740, 834, 1921, 2744, 2762
ScrFI	CCNGG	8 cut(s)	171, 817, 1324, 1932, 2142, 2332, 2426, 2955
SduI	GDGCHC	2 cut(s)	2242, 3127
SexAI	ACCWGGT	1 cut(s)	2424
SfaNI	GCATC	5 cut(s)	406, 1779, 1945, 2443, 2860
SfcI	CTRYAG	4 cut(s)	1260, 2100, 2169, 2772
Sfr274I	CTCGAG	1 cut(s)	2809
SfuI	TTCGAA	2 cut(s)	556, 1118
SinI	GGWCC	3 cut(s)	668, 1052, 2876
SlaI	CTCGAG	1 cut(s)	2809
SmiMI	CAYNNNNRTG	3 cut(s)	939, 1881, 2448
SmlI	CTYRAG	6 cut(s)	314, 2120, 2375, 2457, 2809, 2890
SmoI	CTYRAG	6 cut(s)	314, 2120, 2375, 2457, 2809, 2890
SnaBI	TACGTA	1 cut(s)	2483
SpeI	ACTAGT	1 cut(s)	1870
SphI	GCATGC	1 cut(s)	1245
SsiI	CCGC	9 cut(s)	1245, 1485, 1743, 2786, 2836, 2867, 2887, 3149, 3174
SspI	AATATT	1 cut(s)	2671
StyD4I	CCNGG	8 cut(s)	169, 815, 1322, 1930, 2140, 2330, 2424, 2953
StyI	CCWWGG	5 cut(s)	726, 1168, 1196, 1479, 2724
TaaI	ACNGT	7 cut(s)	251, 1209, 1856, 1865, 2372, 2618, 2842
TaiI	ACGT	7 cut(s)	136, 355, 437, 517, 974, 2485, 2834
TaqII	GACCGA	2 cut(s)	833, 2535
TatI	WGTACW	1 cut(s)	1543
TauI	GCSGC	2 cut(s)	1746, 3176
TscAI	CASTG	7 cut(s)	454, 486, 1034, 1911, 2008, 2247, 2623
TseFI	GTSAC	5 cut(s)	1334, 1352, 2023, 2814, 2895
TseI	GCWGC	7 cut(s)	1262, 1913, 1979, 2540, 3079, 3170, 3176
Tsp45I	GTSAC	5 cut(s)	1334, 1352, 2023, 2814, 2895
TspDTI	ATGAA	7 cut(s)	17, 62, 111, 1293, 2150, 2675, 2681
TspGWI	ACGGA	5 cut(s)	451, 1179, 2582, 2932, 3040
TspRI	CASTG	7 cut(s)	454, 486, 1034, 1911, 2008, 2247, 2623
Tth111I	GACNNNGTC	3 cut(s)	354, 843, 2322
Vha464I	CTTAAG	2 cut(s)	314, 2375
VneI	GTGCAC	2 cut(s)	2238, 3123
VpaK11BI	GGWCC	3 cut(s)	668, 1052, 2876
VspI	ATTAAT	1 cut(s)	900
XagI	CCTNNNNNAGG	1 cut(s)	1059
XapI	RAATTY	5 cut(s)	84, 484, 685, 911, 3014
XbaI	TCTAGA	1 cut(s)	2741
XceI	RCATGY	8 cut(s)	782, 924, 942, 1089, 1245, 1431, 1727, 2492
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1427
XhoI	CTCGAG	1 cut(s)	2809
XmiI	GTMKAC	4 cut(s)	349, 1819, 2336, 2844
XmnI	GAANNNNTTC	2 cut(s)	396, 1065
Zsp2I	ATGCAT	1 cut(s)	1772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.