FvH4_4g03710

Protein present in Fab1, YOTB, Vac1, and EEA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0006555
Physical Location & Seq
Forward (+)
3280959 .. 3287729
6771 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g03710.t2

Sequence Viewer

Length: 3342 bp
ATGGCAGATCCTTCTATCTTTGGGAAAATCGAGCGTGATTATGAGCAAGCACTCATTGCATTAAAAAAAGGAACCCAGTTAATTAAGTATAGCCGGAAGGGAAAGCCAAAGCTTTGTCCATTCAGACTTTCTGCGGATGAAACCACTCTAGTCTGGTTATCACACGGAGAAGAGCGACTTCTGAAATTATCTACGGTCAACAGAATTATACCCGGACAGAGAACAGCTGTGTTTAGAAGATATTTGCGTCCAGAAAAGGATTACTTGTCATTTTCTCTTCTATATAATAATGGTGAACGTTCACTTGATCTGATCTGCAAGGATAAAGCTGAGGTAGAGGTATGGATTGCTGGCCTTAAGTCACTTATTACTCCAGGACAGCAGCAACGTAATAGGCGTACAAAGAGTGAAATTAGCGATTTTCAGGACGGGACCGAATCTGTTAGTGGCCGTTCTTATGGAGCGTTCTTAGATTACGCTCCAAGCACTTCCCATGGTAGGGTATCAGTTGACTCTCGTGAATCAGTGAGTTTTGGAAGCTCAGATGTGGGTACAGAACGAGCAAATATGCAACTAAGAACAAGTACAGGAGATGGTTTTCGAATTAGTGTTTCAAGCACTCCTAGTTGTTCAAGTGGAGGGTCTGGACCTGATGACGTAGAATCACTAGGAGATGTTTATGTGTGGGGAGAGATCTGGTCTGATGGAAATGTATCGGATGGGTCTGCAAATGTAATCCCTGTAAAAACTGATGTTCTGATTCCAAAGCCCTTGGAGTCGAATGTTGTTCTCGATGTACATCAAATTGCTTGTGGTGTTAGACATATTGCTCTCGTAACAAGGCAAGGTGAAGTTTTCACCTGGGGAGAGGAATCTGGGGGACGACTTGGTCATGGGATTGATAGAGACTTCAGTCGTCCTCGCCTTGTTGAGTTTTTGGCTCTTAATAATATAGAACTCGTTGCATGCGGTGAGTATCATTCATGTGCTGTATCTATGTCTGGTGATTTATTTACTTGGGGTGATGGCACGCATAATGCTGGACTTCTTGGTCATGGCACTGATGTTAGCCACTGGATACCTAAAAGGATCACTGGTTCTTTAGAAGGACTACAGGTTATGTCGGTTGCATGTGGCACATGGCATTCAGCTTTGGCAACTTCTAATGGCAAACTCTTTACATTCGGAGATGGAAAATTTGGAGTTTTGGGACATGGAGATCGAGAGAGTGTTACATATCCAAAGGAGGTGCAGTTATTGAGTGGACTGAAGACTATAAAAGTAGCATGTGGTGTTTGGCATACTGCAGCTATTGTAGAGGTTATGGGACAGGCTGGTGTGAATGTTTCATCTCGAAAGCTTTTCACTTGGGGTGATGGTGATAAACATCGTTTAGGTCATGGAAGCAAGGACACATATCTTCTTCCTACCTGTGTCTCTTCACTCATCGACTATAATTTTCACCAGCTAGCATGTGGACACACAATGACTATTGCCCTCACCACATCTGGTCATGTATTTACCATGGGTGGTACTGCATATGGTCAACTAGGAAATCCTAGTTCAGATGGAAAAGCACCTTGCTTAGTACAGGATAAATTGGTAGGTGAGTTTGTTGAAGAAATATCATGTGGAGCATACCATGTTGCTGTCTTGACATCGAGAAGTGAAGTATTCACATGGGGCAGAGGTGCTAATGGAAGACTGGGACATGGGGACACCGAAGATAAGAGAACACCAACTTTGGTTGAGGCTCTGAAGGATAGGCATGTCAAAAGCATATCATGTGGCTCAAACTTTACGTCTAGTATATGCATCCATAAATGGGTTTCCGGAGCTGATCAATCTGTTTGCTCAGGTTGTCGACAGGCATTTGGGTTTACTAGGAAGCGGCATAATTGTTATAATTGTGGACTAGTCCATTGCCATGCTTGTAGTTCTAAAAAAGCACTGAGAGCTGCATTGGCTCCCACTCCTGGAAAACCGCATCGCGTATGTGATTCTTGTTATGCAAAGCTTAAATCTGCTGAGGCGGGTAGTTCTAGTTCTGTTAATAGGAGAGCTACAATCAACCGTTCAATGGACAGAGATGGTCTTAGTAGAGGAGAGACTAGATCTTCAAGGATACTGCTTCCTCCCATCATAGAACCAGTGAAATATCTTGAGATCAAGTCAATGAAGGCAGGGGGCAGATCTGAATCTCCTTCTATAGTTAGGGCTTCCCAAGTTCCATCCCTTTTACAACTGAAAGATATTGCATTTCCAAGTTCATTGAGTGTTCTTCAAAATGCTTTGAGGCCTAATATACCAGTAACACCTCAGTCTAGCACTCCAAATTCAAGATCTAGTTCACCATATGCAAGGAGACCAAGCCCTCCACGTTCTACAACTCCTATATTTTCTAGGAGTGTTATTGATAGTCTTAGAAGGACAAATGACAGTCTGACTCACGAAGTATCAAAGTTACAAAACCAAGTCAGAAGTCTGAAGCAGAGGTGTGATACTCAAGATCTGGAGATTCGGAAACTACATAAAAATGCTAAACAAGTTGGTACAGTAGCAGAAGAACAATTCTCAAAGTGTAGAGCCGCGAAGGAACTTGTCAAGTCCATCACAGAACAGATGAAGGAATTTGCTGAGAGGTTACCTCATGAGGTTTCTGATAACGACAACTTCAAATCATTGCTTGCTGAAGCAGATGAGTTTATAAACACAAGCAGTGGAAGATCAAGCTTAGAGCTTGGCCAACTAGGTGCACCTGATAGGCCTTCCTCAGCACATGGGTCTTCTAAAAGGGAAGATAACAGAGCGGATGACCATGTAGTGTCTGCTGACCATCAAAGCAGCTCAGGTAGTTCGTCTAAGTTACCAGAATCTTCAACAACGCGGACCGAAGGACAAAGGGAAGTCATTGAACAATTTGAACCAGGTGTTTATGTAACTCTGGTTCAACTACCAAATGGTGCTAGAGCTTTCCGACGTGTTAAATTCAGTAAACGGAGGTTTAGTTCGCAACAGGCAGAAGAATGGTGGACTAACAACAAAGAAAGGCTACTTAAAAGATACAGTCAACCAAGGACAAATCATCTTCCTCCAAGTGTACCATCATCATCCGGCACTACAGAACATCCTGAGGATCAAAATTCTGAGGCAGCCTCATCTTCAACTCAAAACAATTCTGAGGCAGCATCGACTTCAAATGAAAATAGTGCTGAGGCAGTCTCATCTTCAAACGAAAACAATCCTGCTGAGACACCCTCATCTTCAAATGAAAACAATCCTGAGACAGCCTCATCCTCAAATCAAAACAATCCTGAGGCAGCCTCAGCTTCTGATACATAG

Protein Analysis

1114

Amino Acids

121.1

Weight (kDa)

8.43

Isoelectric Point (pI)

48.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 36 - 412 6.1e-78 RCC1-like domain
RCC1 PF00415 93 - 142 2.2e-12 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 131 - 156 6.3e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 145 - 196 8.5e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 200 - 249 4.5e-14 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 265 - 311 7.6e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 314 - 363 4.6e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 368 - 412 5.3e-15 Regulator of chromosome condensation (RCC1) repeat
FYVE PF01363 419 - 485 1.7e-15 FYVE zinc finger
BRX_N PF13713 670 - 702 8.7e-10 Transcription factor BRX N-terminal domain
BRX PF08381 779 - 833 2.8e-24 Transcription factor regulating root and shoot growth via Pin3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1905, 2708
AasI GACNNNNNNGTC 2 cut(s) 888, 1050
AccBSI CCGCTC 1 cut(s) 2810
AccI GTMKAC 1 cut(s) 1864
AccII CGCG 3 cut(s) 1992, 2591, 2887
AccIII TCCGGA 1 cut(s) 1832
AciI CCGC 8 cut(s) 134, 969, 1891, 1985, 2033, 2589, 2810, 2887
AclI AACGTT 1 cut(s) 298
AclWI GGATC 3 cut(s) 2, 1097, 3144
AcoI YGGCCR 2 cut(s) 448, 2743
AcsI RAATTY 5 cut(s) 1196, 2335, 2630, 2987, 3142
AcuI CTGAAG 5 cut(s) 895, 1289, 1778, 2507, 2712
AfaI GTAC 8 cut(s) 400, 553, 586, 798, 1534, 1590, 2554, 3102
AfiI CCNNNNNNNGG 5 cut(s) 498, 499, 1825, 1976, 2080
AflII CTTAAG 1 cut(s) 356
AflIII ACRYGT 1 cut(s) 2980
AhlI ACTAGT 1 cut(s) 1915
AjiI CACGTC 1 cut(s) 2981
AjnI CCWGG 4 cut(s) 373, 860, 1975, 2926
AloI GAACNNNNNNTCC 4 cut(s) 1081, 1113, 2992, 3024
Alw21I GWGCWC 1 cut(s) 2758
Alw26I GTCTC 7 cut(s) 900, 1441, 2102, 2359, 3226, 3245, 3278
Alw44I GTGCAC 1 cut(s) 2754
AlwI GGATC 3 cut(s) 2, 1097, 3144
AlwNI CAGNNNCTG 1 cut(s) 3332
Aor13HI TCCGGA 1 cut(s) 1832
AoxI GGCC 5 cut(s) 352, 448, 2297, 2743, 2765
ApaLI GTGCAC 1 cut(s) 2754
ApeKI GCWGC 7 cut(s) 382, 1307, 1958, 2844, 3152, 3185, 3320
ApoI RAATTY 5 cut(s) 1196, 2335, 2630, 2987, 3142
ArsI GACNNNNNNTTYG 2 cut(s) 1787, 1819
AspS9I GGNCC 3 cut(s) 432, 647, 2889
AsuC2I CCSGG 1 cut(s) 213
AsuII TTCGAA 1 cut(s) 601
AsuNHI GCTAGC 1 cut(s) 1468
AvaII GGWCC 3 cut(s) 432, 647, 2889
AxyI CCTNAGG 2 cut(s) 3132, 3315
BaeGI GKGCMC 1 cut(s) 2758
BalI TGGCCA 1 cut(s) 2745
BauI CACGAG 1 cut(s) 516
BbsI GAAGAC 3 cut(s) 1277, 1708, 2778
Bbv12I GWGCWC 1 cut(s) 2758
BbvCI CCTCAGC 5 cut(s) 330, 2028, 2773, 3213, 3325
BbvI GCAGC 7 cut(s) 394, 1319, 1945, 2856, 3164, 3197, 3332
BceAI ACGGC 1 cut(s) 435
BciT130I CCWGG 4 cut(s) 375, 862, 1977, 2928
BciVI GTATCC 2 cut(s) 1071, 2118
BclI TGATCA 1 cut(s) 1840
BcnI CCSGG 1 cut(s) 213
BcoDI GTCTC 7 cut(s) 900, 1441, 2102, 2359, 3226, 3245, 3278
BcuI ACTAGT 1 cut(s) 1915
BfmI CTRYAG 4 cut(s) 1112, 1305, 2208, 3120
BfrI CTTAAG 1 cut(s) 356
BfuI GTATCC 2 cut(s) 1071, 2118
BglII AGATCT 5 cut(s) 693, 2114, 2192, 2342, 2509
BisI GCNGC 9 cut(s) 383, 1308, 1892, 1959, 2589, 2845, 3153, 3186, 3321
BlsI GCNGC 9 cut(s) 384, 1309, 1893, 1960, 2590, 2846, 3154, 3187, 3322
Bme1390I CCNGG 5 cut(s) 213, 375, 862, 1977, 2928
Bme18I GGWCC 3 cut(s) 432, 647, 2889
BmgBI CACGTC 1 cut(s) 2981
BmgT120I GGNCC 3 cut(s) 432, 647, 2889
BmiI GGNNCC 3 cut(s) 73, 433, 1968
BmrFI CCNGG 5 cut(s) 213, 375, 862, 1977, 2928
BmrI ACTGGG 2 cut(s) 70, 1715
BmsI GCATC 3 cut(s) 1824, 1996, 3197
BmtI GCTAGC 1 cut(s) 1472
BmuI ACTGGG 2 cut(s) 70, 1715
BoxI GACNNNNGTC 1 cut(s) 912
BpiI GAAGAC 3 cut(s) 1277, 1708, 2778
BpmI CTGGAG 2 cut(s) 357, 2534
Bpu10I CCTNAGC 7 cut(s) 330, 1855, 2028, 2773, 2848, 3213, 3325
Bpu14I TTCGAA 1 cut(s) 601
BpuEI CTTGAG 2 cut(s) 2183, 2490
BpuMI CCSGG 1 cut(s) 213
BsaBI GATNNNNATC 3 cut(s) 798, 1386, 2197
BsaI GGTCTC 1 cut(s) 2359
BsaJI CCNNGG 5 cut(s) 493, 771, 861, 1524, 3074
BsaWI WCCGGW 1 cut(s) 1832
BsaXI ACNNNNNCTCC 4 cut(s) 1238, 1268, 2992, 3022
Bsc4I CCNNNNNNNGG 5 cut(s) 498, 499, 1825, 1976, 2080
Bse1I ACTGG 6 cut(s) 76, 1079, 1099, 1710, 2150, 2309
Bse21I CCTNAGG 2 cut(s) 3132, 3315
Bse3DI GCAATG 3 cut(s) 54, 1921, 2681
Bse8I GATNNNNATC 3 cut(s) 798, 1386, 2197
BseAI TCCGGA 1 cut(s) 1832
BseBI CCWGG 4 cut(s) 375, 862, 1977, 2928
BseDI CCNNGG 5 cut(s) 493, 771, 861, 1524, 3074
BseGI GGATG 8 cut(s) 142, 724, 1815, 2231, 2818, 3110, 3127, 3293
BseJI GATNNNNATC 3 cut(s) 798, 1386, 2197
BseLI CCNNNNNNNGG 5 cut(s) 498, 499, 1825, 1976, 2080
BseMI GCAATG 3 cut(s) 54, 1921, 2681
BseNI ACTGG 6 cut(s) 76, 1079, 1099, 1710, 2150, 2309
BseRI GAGGAG 1 cut(s) 2118
BseSI GKGCMC 1 cut(s) 2758
BseXI GCAGC 7 cut(s) 394, 1319, 1945, 2856, 3164, 3197, 3332
BsgI GTGCAG 1 cut(s) 1271
Bsh1236I CGCG 3 cut(s) 1992, 2591, 2887
BshFI GGCC 5 cut(s) 354, 450, 2299, 2745, 2767
BsiHKAI GWGCWC 1 cut(s) 2758
BsiSI CCGG 4 cut(s) 94, 213, 1833, 3114
BslFI GGGAC 6 cut(s) 445, 894, 1224, 1341, 1722, 1730
BslI CCNNNNNNNGG 5 cut(s) 498, 499, 1825, 1976, 2080
BsmAI GTCTC 7 cut(s) 900, 1441, 2102, 2359, 3226, 3245, 3278
BsmFI GGGAC 6 cut(s) 445, 894, 1224, 1341, 1722, 1730
BsmI GAATGC 1 cut(s) 1144
BsnI GGCC 5 cut(s) 354, 450, 2299, 2745, 2767
Bso31I GGTCTC 1 cut(s) 2359
Bsp119I TTCGAA 1 cut(s) 601
Bsp1286I GDGCHC 1 cut(s) 2758
Bsp13I TCCGGA 1 cut(s) 1832
Bsp1407I TGTACA 1 cut(s) 796
Bsp19I CCATGG 2 cut(s) 493, 1524
BspACI CCGC 8 cut(s) 134, 969, 1891, 1985, 2033, 2589, 2810, 2887
BspANI GGCC 5 cut(s) 354, 450, 2299, 2745, 2767
BspEI TCCGGA 1 cut(s) 1832
BspFNI CGCG 3 cut(s) 1992, 2591, 2887
BspHI TCATGA 1 cut(s) 2650
BspLI GGNNCC 3 cut(s) 73, 433, 1968
BspMAI CTGCAG 1 cut(s) 1309
BspOI GCTAGC 1 cut(s) 1472
BspPI GGATC 3 cut(s) 2, 1097, 3144
BspQI GCTCTTC 1 cut(s) 165
BspT104I TTCGAA 1 cut(s) 601
BspTI CTTAAG 1 cut(s) 356
BspTNI GGTCTC 1 cut(s) 2359
BsrBI CCGCTC 1 cut(s) 2810
BsrDI GCAATG 3 cut(s) 54, 1921, 2681
BsrGI TGTACA 1 cut(s) 796
BsrI ACTGG 6 cut(s) 76, 1079, 1099, 1710, 2150, 2309
BssECI CCNNGG 5 cut(s) 493, 771, 861, 1524, 3074
BssSI CACGAG 1 cut(s) 516
BssT1I CCWWGG 4 cut(s) 493, 771, 1524, 3074
Bst2BI CACGAG 1 cut(s) 516
Bst2UI CCWGG 4 cut(s) 375, 862, 1977, 2928
Bst4CI ACNGT 5 cut(s) 196, 2075, 2441, 2557, 3068
Bst6I CTCTTC 3 cut(s) 165, 282, 1444
BstAFI CTTAAG 1 cut(s) 356
BstAPI GCANNNNNTGC 1 cut(s) 56
BstAUI TGTACA 1 cut(s) 796
BstBI TTCGAA 1 cut(s) 601
BstC8I GCNNGC 6 cut(s) 48, 352, 967, 1031, 1470, 2688
BstDSI CCRYGG 2 cut(s) 493, 1524
BstEII GGTNACC 1 cut(s) 2643
BstF5I GGATG 8 cut(s) 142, 724, 1815, 2231, 2818, 3110, 3127, 3293
BstFNI CGCG 3 cut(s) 1992, 2591, 2887
BstMAI GTCTC 7 cut(s) 900, 1441, 2102, 2359, 3226, 3245, 3278
BstMWI GCNNNNNNNGC 4 cut(s) 56, 1955, 1964, 3326
BstNI CCWGG 4 cut(s) 375, 862, 1977, 2928
BstNSI RCATGY 5 cut(s) 969, 1134, 1290, 1476, 1772
BstPAI GACNNNNGTC 1 cut(s) 912
BstPI GGTNACC 1 cut(s) 2643
BstSCI CCNGG 5 cut(s) 211, 373, 860, 1975, 2926
BstSFI CTRYAG 4 cut(s) 1112, 1305, 2208, 3120
BstSLI GKGCMC 1 cut(s) 2758
BstUI CGCG 3 cut(s) 1992, 2591, 2887
BstV1I GCAGC 7 cut(s) 394, 1319, 1945, 2856, 3164, 3197, 3332
BstV2I GAAGAC 3 cut(s) 1277, 1708, 2778
BstX2I RGATCY 6 cut(s) 7, 693, 2114, 2192, 2342, 2509
BstYI RGATCY 6 cut(s) 7, 693, 2114, 2192, 2342, 2509
Bsu36I CCTNAGG 2 cut(s) 3132, 3315
BsuI GTATCC 2 cut(s) 1071, 2118
BsuRI GGCC 5 cut(s) 354, 450, 2299, 2745, 2767
BtgI CCRYGG 2 cut(s) 493, 1524
BtgZI GCGATG 1 cut(s) 1973
BtrI CACGTC 1 cut(s) 2981
BtsCI GGATG 8 cut(s) 142, 724, 1815, 2231, 2818, 3110, 3127, 3293
BtsI GCAGTG 1 cut(s) 2725
BtsIMutI CAGTG 7 cut(s) 531, 1059, 1072, 1092, 1949, 2157, 2725
Cac8I GCNNGC 6 cut(s) 48, 352, 967, 1031, 1470, 2688
CaiI CAGNNNCTG 1 cut(s) 3332
CciI TCATGA 1 cut(s) 2650
Cfr13I GGNCC 3 cut(s) 432, 647, 2889
CpoI CGGWCCG 1 cut(s) 2889
CseI GACGC 1 cut(s) 236
CsiI ACCWGGT 1 cut(s) 2926
Csp6I GTAC 8 cut(s) 399, 552, 585, 797, 1533, 1589, 2553, 3101
CspI CGGWCCG 1 cut(s) 2889
CviQI GTAC 8 cut(s) 399, 552, 585, 797, 1533, 1589, 2553, 3101
DrdI GACNNNNNNGTC 2 cut(s) 888, 1050
DseDI GACNNNNNNGTC 2 cut(s) 888, 1050
EaeI YGGCCR 2 cut(s) 448, 2743
Eam1104I CTCTTC 3 cut(s) 165, 282, 1444
EarI CTCTTC 3 cut(s) 165, 282, 1444
Eco130I CCWWGG 4 cut(s) 493, 771, 1524, 3074
Eco147I AGGCCT 2 cut(s) 2299, 2767
Eco31I GGTCTC 1 cut(s) 2359
Eco47I GGWCC 3 cut(s) 432, 647, 2889
Eco57I CTGAAG 5 cut(s) 895, 1289, 1778, 2507, 2712
Eco81I CCTNAGG 2 cut(s) 3132, 3315
Eco91I GGTNACC 1 cut(s) 2643
EcoO65I GGTNACC 1 cut(s) 2643
EcoRII CCWGG 4 cut(s) 373, 860, 1975, 2926
EcoT14I CCWWGG 4 cut(s) 493, 771, 1524, 3074
EcoT22I ATGCAT 1 cut(s) 1817
ErhI CCWWGG 4 cut(s) 493, 771, 1524, 3074
FalI AAGNNNNNCTT 4 cut(s) 162, 194, 248, 280
FaqI GGGAC 6 cut(s) 445, 894, 1224, 1341, 1722, 1730
FauI CCCGC 1 cut(s) 2026
FauNDI CATATG 2 cut(s) 1540, 2356
FbaI TGATCA 1 cut(s) 1840
FblI GTMKAC 1 cut(s) 1864
Fnu4HI GCNGC 9 cut(s) 383, 1308, 1892, 1959, 2589, 2845, 3153, 3186, 3321
FokI GGATG 8 cut(s) 149, 731, 1802, 2218, 2825, 3097, 3114, 3280
Fsp4HI GCNGC 9 cut(s) 383, 1308, 1892, 1959, 2589, 2845, 3153, 3186, 3321
GluI GCNGC 9 cut(s) 383, 1308, 1892, 1959, 2589, 2845, 3153, 3186, 3321
GsuI CTGGAG 2 cut(s) 357, 2534
HaeIII GGCC 5 cut(s) 354, 450, 2299, 2745, 2767
HapII CCGG 4 cut(s) 94, 213, 1833, 3114
HgaI GACGC 1 cut(s) 236
HincII GTYRAC 5 cut(s) 199, 511, 1547, 1865, 3071
HindII GTYRAC 5 cut(s) 199, 511, 1547, 1865, 3071
HindIII AAGCTT 4 cut(s) 110, 1358, 2015, 2731
HpaII CCGG 4 cut(s) 94, 213, 1833, 3114
Hpy99I CGWCG 1 cut(s) 2982
HpyCH4III ACNGT 5 cut(s) 196, 2075, 2441, 2557, 3068
HpyCH4IV ACGT 6 cut(s) 298, 388, 657, 1802, 2380, 2980
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 1955, 1964, 3326
HpySE526I ACGT 6 cut(s) 298, 388, 657, 1802, 2380, 2980
Kpn2I TCCGGA 1 cut(s) 1832
Ksp22I TGATCA 1 cut(s) 1840
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 5 cut(s) 461, 484, 1634, 1835, 1972
Lsp1109I GCAGC 7 cut(s) 394, 1319, 1945, 2856, 3164, 3197, 3332
LweI GCATC 3 cut(s) 1824, 1996, 3197
MabI ACCWGGT 1 cut(s) 2926
MaeII ACGT 6 cut(s) 298, 388, 657, 1802, 2380, 2980
MaeIII GTNAC 8 cut(s) 360, 835, 1231, 2311, 2463, 2643, 2865, 2938
MbiI CCGCTC 1 cut(s) 2810
MflI RGATCY 6 cut(s) 7, 693, 2114, 2192, 2342, 2509
MhlI GDGCHC 1 cut(s) 2758
MlsI TGGCCA 1 cut(s) 2745
MluNI TGGCCA 1 cut(s) 2745
MlyI GAGTC 3 cut(s) 506, 785, 2440
MmeI TCCRAC 1 cut(s) 3001
Mox20I TGGCCA 1 cut(s) 2745
Mph1103I ATGCAT 1 cut(s) 1817
MroI TCCGGA 1 cut(s) 1832
MscI TGGCCA 1 cut(s) 2745
MseI TTAA 9 cut(s) 62, 80, 84, 357, 945, 2019, 2052, 2985, 3057
MslI CAYNNNNRTG 3 cut(s) 984, 1926, 2535
Msp20I TGGCCA 1 cut(s) 2745
MspA1I CMGCKG 1 cut(s) 227
MspCI CTTAAG 1 cut(s) 356
MspI CCGG 4 cut(s) 94, 213, 1833, 3114
MspR9I CCNGG 5 cut(s) 213, 375, 862, 1977, 2928
Mva1269I GAATGC 1 cut(s) 1144
MvaI CCWGG 4 cut(s) 375, 862, 1977, 2928
MvnI CGCG 3 cut(s) 1992, 2591, 2887
MwoI GCNNNNNNNGC 4 cut(s) 56, 1955, 1964, 3326
NciI CCSGG 1 cut(s) 213
NcoI CCATGG 2 cut(s) 493, 1524
NdeI CATATG 2 cut(s) 1540, 2356
NheI GCTAGC 1 cut(s) 1468
NlaIV GGNNCC 3 cut(s) 73, 433, 1968
NmuCI GTSAC 1 cut(s) 360
NsiI ATGCAT 1 cut(s) 1817
NspI RCATGY 5 cut(s) 969, 1134, 1290, 1476, 1772
NspV TTCGAA 1 cut(s) 601
PacI TTAATTAA 1 cut(s) 84
PaeI GCATGC 1 cut(s) 969
PagI TCATGA 1 cut(s) 2650
PceI AGGCCT 2 cut(s) 2299, 2767
PciSI GCTCTTC 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 394
PctI GAATGC 1 cut(s) 1144
PfeI GAWTC 9 cut(s) 437, 521, 662, 760, 872, 2000, 2198, 2518, 2873
PflFI GACNNNGTC 1 cut(s) 888
PfoI TCCNGGA 2 cut(s) 373, 1975
PkrI GCNGC 9 cut(s) 384, 1309, 1893, 1960, 2590, 2846, 3154, 3187, 3322
PleI GAGTC 3 cut(s) 506, 784, 2440
PpsI GAGTC 3 cut(s) 506, 784, 2440
PshAI GACNNNNGTC 1 cut(s) 912
PsiI TTATAA 2 cut(s) 1905, 2708
Psp1406I AACGTT 1 cut(s) 298
Psp6I CCWGG 4 cut(s) 373, 860, 1975, 2926
PspEI GGTNACC 1 cut(s) 2643
PspGI CCWGG 4 cut(s) 373, 860, 1975, 2926
PspN4I GGNNCC 3 cut(s) 73, 433, 1968
PspPI GGNCC 3 cut(s) 432, 647, 2889
PsrI GAACNNNNNNTAC 4 cut(s) 2029, 2061, 2931, 2963
PstI CTGCAG 1 cut(s) 1309
PstNI CAGNNNCTG 1 cut(s) 3332
PsuI RGATCY 6 cut(s) 7, 693, 2114, 2192, 2342, 2509
PsyI GACNNNGTC 1 cut(s) 888
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 8 cut(s) 400, 553, 586, 798, 1534, 1590, 2554, 3102
RsaNI GTAC 8 cut(s) 399, 552, 585, 797, 1533, 1589, 2553, 3101
RseI CAYNNNNRTG 3 cut(s) 984, 1926, 2535
Rsr2I CGGWCCG 1 cut(s) 2889
RsrII CGGWCCG 1 cut(s) 2889
SalI GTCGAC 1 cut(s) 1863
SapI GCTCTTC 1 cut(s) 165
SaqAI TTAA 9 cut(s) 62, 80, 84, 357, 945, 2019, 2052, 2985, 3057
SatI GCNGC 9 cut(s) 383, 1308, 1892, 1959, 2589, 2845, 3153, 3186, 3321
Sau96I GGNCC 3 cut(s) 432, 647, 2889
SchI GAGTC 3 cut(s) 506, 785, 2440
ScrFI CCNGG 5 cut(s) 213, 375, 862, 1977, 2928
SduI GDGCHC 1 cut(s) 2758
SexAI ACCWGGT 1 cut(s) 2926
SfaNI GCATC 3 cut(s) 1824, 1996, 3197
SfcI CTRYAG 4 cut(s) 1112, 1305, 2208, 3120
SfuI TTCGAA 1 cut(s) 601
SinI GGWCC 3 cut(s) 432, 647, 2889
SmiMI CAYNNNNRTG 3 cut(s) 984, 1926, 2535
SmlI CTYRAG 3 cut(s) 356, 2162, 2505
SmoI CTYRAG 3 cut(s) 356, 2162, 2505
SpeI ACTAGT 1 cut(s) 1915
SphI GCATGC 1 cut(s) 969
SseBI AGGCCT 2 cut(s) 2299, 2767
SsiI CCGC 8 cut(s) 134, 969, 1891, 1985, 2033, 2589, 2810, 2887
StuI AGGCCT 2 cut(s) 2299, 2767
StyD4I CCNGG 5 cut(s) 211, 373, 860, 1975, 2926
StyI CCWWGG 4 cut(s) 493, 771, 1524, 3074
TaaI ACNGT 5 cut(s) 196, 2075, 2441, 2557, 3068
TaiI ACGT 6 cut(s) 301, 391, 660, 1805, 2383, 2983
TaqII GACCGA 2 cut(s) 449, 2906
TatI WGTACW 3 cut(s) 584, 796, 1588
TauI GCSGC 2 cut(s) 1894, 2591
TfiI GAWTC 9 cut(s) 437, 521, 662, 760, 872, 2000, 2198, 2518, 2873
Tru1I TTAA 9 cut(s) 62, 80, 84, 357, 945, 2019, 2052, 2985, 3057
Tru9I TTAA 9 cut(s) 62, 80, 84, 357, 945, 2019, 2052, 2985, 3057
TscAI CASTG 7 cut(s) 531, 1066, 1079, 1099, 1956, 2157, 2725
TseFI GTSAC 1 cut(s) 360
TseI GCWGC 7 cut(s) 382, 1307, 1958, 2844, 3152, 3185, 3320
Tsp45I GTSAC 1 cut(s) 360
TspDTI ATGAA 8 cut(s) 153, 972, 1338, 2192, 2259, 2639, 3216, 3285
TspGWI ACGGA 2 cut(s) 180, 3013
TspRI CASTG 7 cut(s) 531, 1066, 1079, 1099, 1956, 2157, 2725
Tth111I GACNNNGTC 1 cut(s) 888
Vha464I CTTAAG 1 cut(s) 356
VneI GTGCAC 1 cut(s) 2754
VpaK11BI GGWCC 3 cut(s) 432, 647, 2889
XapI RAATTY 5 cut(s) 1196, 2335, 2630, 2987, 3142
XceI RCATGY 5 cut(s) 969, 1134, 1290, 1476, 1772
XcmI CCANNNNNNNNNTGG 1 cut(s) 1472
XmiI GTMKAC 1 cut(s) 1864
Zsp2I ATGCAT 1 cut(s) 1817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.