RchiOBHm_Chr4g0393321

Protein present in Fab1, YOTB, Vac1, and EEA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0006555
Physical Location & Seq
Forward (+)
8834697 .. 8840502
5806 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36593

Sequence Viewer

Length: 3420 bp
ATGGCAGATCCTTCTATCTTTGGGAATATCGAGCGTGATTATGAGCAAGTCAGTATTCCCATCACTACGCTCTGTGTCTATATCAAAGATTTTGATCTCTGTGCTTTTGTCAATATTTCATCTCCTGATTTTCCTTCTCTTATGAAGTCACTCATTGCATTAAAAAAAGGAACCCAGTTGATTAAGTACAGCCGGAAAGGAAAGCCAAAGCTTCGTCCATTCAGACTTTCTGCGGATGAAACCACTCTAGTCTGGTTATCACATGGAGAAGAACGACATCTGAAATTATCGACAGTATCTAGAATTATACCCGGACAGAGAACAGCTGTGTTTAGAAGATATTTGCGTCCAGAAAAGGATTACTTATCATTTTCTCTTCTATATAATAACGGTGAACGGTCACTTGATCTGGTCTGCAAGGATAAAGCTGAGGTAGAGGCATGGATTGCTGGCCTTAAGGCAATAATTTCTAGAGGACAGCGTAATAGGCGTACAAAGAGTGATCTTACTGAAATTCACGACGGAAGTGAATCTGTTAGTGGCCGTCATTCTGGAGTGACCTTAAATGACACTTCAAGCCATGGTAGGGTATCCGTTGATTCTCGTGAATCAGTGAGCTCAGATGTGGGTGCAGAACGTGCAAATATGCAACTAAGAACAAGTACAGGAGATGGTTTTCGAGTTAGTGTTTCAAGCACTCCTAGCTGCTCAAGTGGAGGGTCTGGACCTGATGACATAGAATCACTAGGAGATGTTTATGTGTGGGGAGAGATCTGGTCTGATGGAAATGTACCTGATGGATCTGCAAATGTAATACCTATAAACACTGATGTGCTTATTCCAAAGCCCTTGGAGTCGAATGTTGTTCTTGATGTTCATCAAATTGCTTGTGGTGTTAGACATATTGCTCTTGTAACAAGGCAAGGTGAAGTTTTCACCTGGGGAGAGGAATCTGGTGGAAGACTTGGTCATGGGATTGATAGAGACTTTAGTCGCCCTCGCCTTGTTGAGTTCCTGGCTCTTAATAATGTAGAATTTGTTGCATGTGGCGAGTATCATTCATGTGCTGTATCTACGTCTGGTGATTTATTTACTTGGGGTGATGGTACACATAATGCTGGACTTCTTGGTCATGGAACTGATGTTAGCCACTGGCTACCTAAAAGGATTACTGGTTCTTTAGAAGGACTGCAGGTTCTGTCGGTTGCATGTGGCACATGGCATTCAGCTTTGGCAACTTATAATGGCAAACTCTTTACGTTTGGAGATGGAAAATTTGGAGTTTTGGGACATGGAGATCGAGAGAGTATTGCATATCCAAGGGAGGTGCAGTTATTGAGTGGGCTGAAGACTATAAAAGTAGCTTGTGGTGTTTGGCATACTGCAGCTATTGTAGAGGTTATGGGTCAGTCTGGTGTAAATGTTTCATCTCGAAAGCTGTTCACTTGGGGTGATGGTGATAAACATCGTTTAGGTCATGGAAGCAAGGACACATATCTTCTTCCTACCTGTGTCTCTTCACTTATCGACTATAATTTCCAGCAGCTAGCGTGTGGACACACAATGACTATTGCCCTCACCACATCTGGTCATGTGTTTACCATGGGTGGTACTGCATATGGTCAACTAGGAAATCCTAGTTCTGATGGGAAAGCACCTTGCTTAGTACAGGATAAATTGGTAGGTGAGTTTGTTGAAGAAATATCATGTGGAGCCCATCATGTTGCTGTCCTGACATCGAGAAGTGAAGTATTCACATGGGGCAGAGGTGCTAATGGAAGACTGGGACATGGGGACACCGAAGATCGGAGAACGCCAACTATGGTTGAAGCTCTGAAAGATAGGCATGTGAAAAGCATATCATGTGGCTCAAACTTCACATCTAGTATATGTATCCATAAATGGGTTTCTGGAGCTGATCAATCAGTTTGCTCAGGTTGTCGACAGGCATTTGGTTTTACTAGGAAGAGGCATAACTGTTATAATTGTGGACTAGTCCATTGCCATGCTTGTAGTTCCAAAAAAGCACTGAGGGCTGCATTGGCTCCCACTCCTGGAAAACCGCATCGCGTATGTGATTCTTGTTATGCTAAGCTTAAATCTGCTGAGGCTGGGAATTCTAGTACTGTTAGTAGGAGAGCTACAATCGCCCGTTCAATGGACAGAGATGGTCTTAGTAGGGGAGAGGCTAGATCTTCAAGGATTCTGCTTCCTCCCATCATAGAACCAGTGAAATATCATGAGATTAAGTCAATGAAGGCTGGGGGCAGATCGGAATCTCCTTCTATAGTTAGGGCTTCCCAAGTTCCGTCCCTTTTACAACTGAAAGATATTGCATTTCCAAGTTCATTGAGTGTTCTTCAAAATGCTTTGAGGCCTGCTATACCAGTAACACCTCGGTCTAATACTGCAAGGTCAAGATCTAGTTCACCATATTCAAGGAGACCAAGCCCTCCACGGTCTGCAACTCCTATATTTTCTAGAAGTGTTATTGACAGTCTTAAAAGGACAAATGACAGTCTGATTCACGAACTATCAAAGTTGCAAACCCAGGTCAGAAGTCTGAAGCAGAAGTGTGATACTCAAGATCTGGAGATTCGAAAACTAAATAAAAATGCTAAAGAAGCTAGTTCATTAGCAGAAGAACAATTTTCCAAGTGCAGAGCCGTGAAGGAACTTGTCAAGTCCATAACAGAACAGATGAAAGAATTGGCAGACAAGTTGCCTCCTGAGGTTTTTGACAACGAGAACTTCGAATCATTGCGTGCTCAAGCAGAAGAATTTATAAACACATACAGTGAAAGATCAAGCTTAGACCATGATCAACAAGGTGCAGCTGATAAGTCTTCCTCGGTACCTGAGTCTTCAAAAATGGCAGAGAACAGAGTGGATGACCATGTAGTGACTGCTGACTCTCAAACCAGCTCAGCAAGCACCTCGAAGTCAAATGAATCATCAACAATGCAGACCGAAGGACAAAGGGAAGTCATTGAACAATTTGAACCAGGTGTTTATGTAACTCTGCTTCATCTACCAAATGGTGCTAGGGCTTTCCGGCGTGTTAAATTCAGTAAACGGAGGTTTAGTTCGCAACAGGCAGAAGAATGGTGGACTAACAACAGAGAAAGGCTGCTTAGAAGATACAGTCAACCGAGGACAGCTCCTCTTCCTCCAAGTGTACCATCATCGTCCAGCACTAGAGAACCTCCTGAAGATCAAAACAGCTCTGAGGCAGCCTCATCTTCAAATCAAAACAGTTCTGAGGCCGCCCCGTCTTCAAATCAAAACAGTTCTGAGGCAGCCCCATCTTCAAATCAAAACAGTTCTGAGGCAGCCTCATCTTCAAATCAAAACAACACTGAGGCAGCCTCATCTTCAAATCAAAACAACACTGAGGCAGCCTCATCTTCTGATACATAG

Protein Analysis

1139

Amino Acids

124.11

Weight (kDa)

8.42

Isoelectric Point (pI)

50.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH_12 PF16457 52 - 155 1.9e-07 Pleckstrin homology domain
WD40_RLD PF25390 252 - 627 1.3e-77 RCC1-like domain
RCC1 PF00415 308 - 357 1e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 347 - 371 1.8e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 360 - 411 1.7e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 415 - 464 1.2e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 480 - 526 1.7e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 529 - 578 7.9e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 583 - 627 4.2e-14 Regulator of chromosome condensation (RCC1) repeat
FYVE PF01363 634 - 700 2.2e-15 FYVE zinc finger
BRX_N PF13713 885 - 918 5e-12 Transcription factor BRX N-terminal domain
BRX PF08381 994 - 1048 1.1e-23 Transcription factor regulating root and shoot growth via Pin3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1242, 1983, 2786
AasI GACNNNNNNGTC 1 cut(s) 1128
Acc36I ACCTGC 1 cut(s) 1183
Acc65I GGTACC 1 cut(s) 2854
AccB1I GGYRCC 1 cut(s) 2854
AccI GTMKAC 1 cut(s) 1942
AccII CGCG 1 cut(s) 2070
AciI CCGC 3 cut(s) 233, 2063, 3267
AclWI GGATC 2 cut(s) 2, 808
AcoI YGGCCR 1 cut(s) 541
AcsI RAATTY 6 cut(s) 513, 1034, 1274, 2116, 2780, 3065
AcuI CTGAAG 3 cut(s) 1367, 2585, 3231
AfiI CCNNNNNNNGG 5 cut(s) 586, 1806, 1903, 2054, 2158
AflII CTTAAG 1 cut(s) 455
AhlI ACTAGT 1 cut(s) 1993
AjnI CCWGG 5 cut(s) 938, 1014, 2053, 2550, 3004
AleI CACNNNNGTG 1 cut(s) 830
AloI GAACNNNNNNTCC 6 cut(s) 1159, 1179, 1191, 1211, 3070, 3102
Alw21I GWGCWC 2 cut(s) 620, 2770
Alw26I GTCTC 3 cut(s) 978, 1519, 2437
AlwI GGATC 2 cut(s) 2, 808
AlwNI CAGNNNCTG 1 cut(s) 1198
AoxI GGCC 4 cut(s) 451, 541, 2375, 3264
ApoI RAATTY 6 cut(s) 513, 1034, 1274, 2116, 2780, 3065
Asp718I GGTACC 1 cut(s) 2854
AspS9I GGNCC 1 cut(s) 725
AsuC2I CCSGG 1 cut(s) 312
AsuII TTCGAA 2 cut(s) 2599, 2754
AsuNHI GCTAGC 1 cut(s) 1546
AvaII GGWCC 1 cut(s) 725
AxyI CCTNAGG 1 cut(s) 2730
BaeI ACNNNNGTAYC 2 cut(s) 2846, 2879
BanI GGYRCC 1 cut(s) 2854
BanII GRGCYC 2 cut(s) 620, 1717
BarI GAAGNNNNNNTAC 2 cut(s) 3009, 3041
BauI CACGAG 1 cut(s) 603
BbsI GAAGAC 6 cut(s) 967, 1355, 1786, 2838, 2856, 3267
Bbv12I GWGCWC 2 cut(s) 620, 2770
BbvCI CCTCAGC 2 cut(s) 429, 2106
BceAI ACGGC 2 cut(s) 528, 2651
BcgI CGANNNNNNTGC 2 cut(s) 2919, 2953
BciT130I CCWGG 5 cut(s) 940, 1016, 2055, 2552, 3006
BciVI GTATCC 2 cut(s) 601, 1904
BclI TGATCA 2 cut(s) 1918, 2821
BcnI CCSGG 1 cut(s) 312
BcoDI GTCTC 3 cut(s) 978, 1519, 2437
BcuI ACTAGT 1 cut(s) 1993
BfmI CTRYAG 3 cut(s) 1190, 1383, 2286
BfrI CTTAAG 1 cut(s) 455
BfuAI ACCTGC 1 cut(s) 1183
BfuI GTATCC 2 cut(s) 601, 1904
BglII AGATCT 4 cut(s) 771, 2192, 2420, 2587
BlpI GCTNAGC 2 cut(s) 2091, 2926
BmcAI AGTACT 1 cut(s) 2125
Bme1390I CCNGG 6 cut(s) 312, 940, 1016, 2055, 2552, 3006
Bme18I GGWCC 1 cut(s) 725
BmgT120I GGNCC 1 cut(s) 725
BmiI GGNNCC 4 cut(s) 172, 1714, 2046, 2856
BmrFI CCNGG 6 cut(s) 312, 940, 1016, 2055, 2552, 3006
BmrI ACTGGG 2 cut(s) 169, 1793
BmsI GCATC 1 cut(s) 2074
BmtI GCTAGC 1 cut(s) 1550
BmuI ACTGGG 2 cut(s) 169, 1793
BoxI GACNNNNGTC 1 cut(s) 990
BpiI GAAGAC 6 cut(s) 967, 1355, 1786, 2838, 2856, 3267
BpmI CTGGAG 3 cut(s) 573, 1932, 2612
Bpu10I CCTNAGC 3 cut(s) 429, 1933, 2106
Bpu1102I GCTNAGC 2 cut(s) 2091, 2926
Bpu14I TTCGAA 2 cut(s) 2599, 2754
BpuEI CTTGAG 3 cut(s) 694, 2568, 2754
BpuMI CCSGG 1 cut(s) 312
BsaBI GATNNNNATC 4 cut(s) 93, 876, 1464, 2275
BsaI GGTCTC 1 cut(s) 2437
BsaXI ACNNNNNCTCC 4 cut(s) 1316, 1346, 3070, 3100
Bsc4I CCNNNNNNNGG 5 cut(s) 586, 1806, 1903, 2054, 2158
Bse1I ACTGG 6 cut(s) 175, 1157, 1177, 1788, 2228, 2387
Bse21I CCTNAGG 1 cut(s) 2730
Bse3DI GCAATG 3 cut(s) 153, 1999, 2759
Bse8I GATNNNNATC 4 cut(s) 93, 876, 1464, 2275
BseBI CCWGG 5 cut(s) 940, 1016, 2055, 2552, 3006
BseGI GGATG 2 cut(s) 241, 2896
BseJI GATNNNNATC 4 cut(s) 93, 876, 1464, 2275
BseLI CCNNNNNNNGG 5 cut(s) 586, 1806, 1903, 2054, 2158
BseMI GCAATG 3 cut(s) 153, 1999, 2759
BseNI ACTGG 6 cut(s) 175, 1157, 1177, 1788, 2228, 2387
BseRI GAGGAG 1 cut(s) 3153
BseYI CCCAGC 2 cut(s) 2111, 2261
BsgI GTGCAG 4 cut(s) 651, 1349, 2680, 2853
Bsh1236I CGCG 1 cut(s) 2070
BshFI GGCC 4 cut(s) 453, 543, 2377, 3266
BshNI GGYRCC 1 cut(s) 2854
BsiHKAI GWGCWC 2 cut(s) 620, 2770
BsiSI CCGG 3 cut(s) 193, 312, 3055
BslFI GGGAC 4 cut(s) 1302, 1800, 1808, 2296
BslI CCNNNNNNNGG 5 cut(s) 586, 1806, 1903, 2054, 2158
BsmAI GTCTC 3 cut(s) 978, 1519, 2437
BsmFI GGGAC 4 cut(s) 1302, 1800, 1808, 2296
BsmI GAATGC 1 cut(s) 1222
BsnI GGCC 4 cut(s) 453, 543, 2377, 3266
Bso31I GGTCTC 1 cut(s) 2437
Bsp119I TTCGAA 2 cut(s) 2599, 2754
Bsp1286I GDGCHC 3 cut(s) 620, 1717, 2770
Bsp1720I GCTNAGC 2 cut(s) 2091, 2926
Bsp19I CCATGG 2 cut(s) 580, 1602
BspACI CCGC 3 cut(s) 233, 2063, 3267
BspANI GGCC 4 cut(s) 453, 543, 2377, 3266
BspFNI CGCG 1 cut(s) 2070
BspHI TCATGA 1 cut(s) 2239
BspLI GGNNCC 4 cut(s) 172, 1714, 2046, 2856
BspMAI CTGCAG 2 cut(s) 1194, 1387
BspMI ACCTGC 1 cut(s) 1183
BspOI GCTAGC 1 cut(s) 1550
BspPI GGATC 2 cut(s) 2, 808
BspT104I TTCGAA 2 cut(s) 2599, 2754
BspT107I GGYRCC 1 cut(s) 2854
BspTI CTTAAG 1 cut(s) 455
BspTNI GGTCTC 1 cut(s) 2437
BsrDI GCAATG 3 cut(s) 153, 1999, 2759
BsrI ACTGG 6 cut(s) 175, 1157, 1177, 1788, 2228, 2387
BssSI CACGAG 1 cut(s) 603
BssT1I CCWWGG 4 cut(s) 580, 849, 1319, 1602
Bst2BI CACGAG 1 cut(s) 603
Bst2UI CCWGG 5 cut(s) 940, 1016, 2055, 2552, 3006
Bst6I CTCTTC 4 cut(s) 381, 1522, 1961, 3171
BstAFI CTTAAG 1 cut(s) 455
BstAPI GCANNNNNTGC 2 cut(s) 446, 638
BstBI TTCGAA 2 cut(s) 2599, 2754
BstC8I GCNNGC 5 cut(s) 451, 1548, 2379, 2766, 2932
BstDSI CCRYGG 3 cut(s) 580, 1602, 2456
BstF5I GGATG 2 cut(s) 241, 2896
BstFNI CGCG 1 cut(s) 2070
BstMAI GTCTC 3 cut(s) 978, 1519, 2437
BstMWI GCNNNNNNNGC 9 cut(s) 446, 487, 638, 702, 2033, 2042, 2147, 2624, 2931
BstNI CCWGG 5 cut(s) 940, 1016, 2055, 2552, 3006
BstNSI RCATGY 3 cut(s) 1047, 1212, 1850
BstPAI GACNNNNGTC 1 cut(s) 990
BstSCI CCNGG 6 cut(s) 310, 938, 1014, 2053, 2550, 3004
BstSFI CTRYAG 3 cut(s) 1190, 1383, 2286
BstUI CGCG 1 cut(s) 2070
BstV2I GAAGAC 6 cut(s) 967, 1355, 1786, 2838, 2856, 3267
BstX2I RGATCY 6 cut(s) 7, 771, 800, 2192, 2420, 2587
BstYI RGATCY 6 cut(s) 7, 771, 800, 2192, 2420, 2587
Bsu36I CCTNAGG 1 cut(s) 2730
BsuI GTATCC 2 cut(s) 601, 1904
BsuRI GGCC 4 cut(s) 453, 543, 2377, 3266
BtgI CCRYGG 3 cut(s) 580, 1602, 2456
BtgZI GCGATG 1 cut(s) 2051
BtsCI GGATG 2 cut(s) 241, 2896
BtsIMutI CAGTG 8 cut(s) 618, 825, 1150, 2027, 2235, 2803, 3357, 3390
BveI ACCTGC 1 cut(s) 1183
Cac8I GCNNGC 5 cut(s) 451, 1548, 2379, 2766, 2932
CaiI CAGNNNCTG 1 cut(s) 1198
CciI TCATGA 1 cut(s) 2239
Cfr13I GGNCC 1 cut(s) 725
CseI GACGC 1 cut(s) 335
CsiI ACCWGGT 1 cut(s) 3004
DrdI GACNNNNNNGTC 1 cut(s) 1128
DseDI GACNNNNNNGTC 1 cut(s) 1128
EaeI YGGCCR 1 cut(s) 541
Eam1104I CTCTTC 4 cut(s) 381, 1522, 1961, 3171
EarI CTCTTC 4 cut(s) 381, 1522, 1961, 3171
Ecl136II GAGCTC 1 cut(s) 618
Eco130I CCWWGG 4 cut(s) 580, 849, 1319, 1602
Eco147I AGGCCT 1 cut(s) 2377
Eco24I GRGCYC 2 cut(s) 620, 1717
Eco31I GGTCTC 1 cut(s) 2437
Eco47I GGWCC 1 cut(s) 725
Eco53kI GAGCTC 1 cut(s) 618
Eco57I CTGAAG 3 cut(s) 1367, 2585, 3231
Eco81I CCTNAGG 1 cut(s) 2730
EcoICRI GAGCTC 1 cut(s) 618
EcoRI GAATTC 1 cut(s) 2116
EcoRII CCWGG 5 cut(s) 938, 1014, 2053, 2550, 3004
EcoT14I CCWWGG 4 cut(s) 580, 849, 1319, 1602
EcoT38I GRGCYC 2 cut(s) 620, 1717
ErhI CCWWGG 4 cut(s) 580, 849, 1319, 1602
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FaqI GGGAC 4 cut(s) 1302, 1800, 1808, 2296
FauNDI CATATG 1 cut(s) 1618
FbaI TGATCA 2 cut(s) 1918, 2821
FblI GTMKAC 1 cut(s) 1942
FokI GGATG 2 cut(s) 248, 2903
FriOI GRGCYC 2 cut(s) 620, 1717
GsaI CCCAGC 2 cut(s) 2115, 2265
GsuI CTGGAG 3 cut(s) 573, 1932, 2612
HaeIII GGCC 4 cut(s) 453, 543, 2377, 3266
HapII CCGG 3 cut(s) 193, 312, 3055
HgaI GACGC 1 cut(s) 335
HincII GTYRAC 3 cut(s) 1625, 1943, 3149
HindII GTYRAC 3 cut(s) 1625, 1943, 3149
HindIII AAGCTT 3 cut(s) 209, 2093, 2809
HpaII CCGG 3 cut(s) 193, 312, 3055
Hpy99I CGWCG 1 cut(s) 524
HpyAV CCTTC 7 cut(s) 21, 144, 1178, 2251, 2292, 2665, 2966
HpyCH4IV ACGT 3 cut(s) 637, 1076, 1259
HpyF10VI GCNNNNNNNGC 9 cut(s) 446, 487, 638, 702, 2033, 2042, 2147, 2624, 2931
HpySE526I ACGT 3 cut(s) 637, 1076, 1259
KpnI GGTACC 1 cut(s) 2858
Ksp22I TGATCA 2 cut(s) 1918, 2821
LmnI GCTCC 4 cut(s) 1712, 1913, 2050, 3166
LweI GCATC 1 cut(s) 2074
MabI ACCWGGT 1 cut(s) 3004
MaeII ACGT 3 cut(s) 637, 1076, 1259
MaeIII GTNAC 7 cut(s) 147, 399, 556, 913, 2389, 2902, 3016
MflI RGATCY 6 cut(s) 7, 771, 800, 2192, 2420, 2587
MhlI GDGCHC 3 cut(s) 620, 1717, 2770
MlyI GAGTC 3 cut(s) 863, 2870, 2906
MseI TTAA 9 cut(s) 161, 183, 456, 563, 1023, 2097, 2247, 2502, 3063
MslI CAYNNNNRTG 3 cut(s) 830, 1062, 2004
MspA1I CMGCKG 2 cut(s) 326, 2837
MspCI CTTAAG 1 cut(s) 455
MspI CCGG 3 cut(s) 193, 312, 3055
MspR9I CCNGG 6 cut(s) 312, 940, 1016, 2055, 2552, 3006
Mva1269I GAATGC 1 cut(s) 1222
MvaI CCWGG 5 cut(s) 940, 1016, 2055, 2552, 3006
MvnI CGCG 1 cut(s) 2070
MwoI GCNNNNNNNGC 9 cut(s) 446, 487, 638, 702, 2033, 2042, 2147, 2624, 2931
NciI CCSGG 1 cut(s) 312
NcoI CCATGG 2 cut(s) 580, 1602
NdeI CATATG 1 cut(s) 1618
NheI GCTAGC 1 cut(s) 1546
NlaIV GGNNCC 4 cut(s) 172, 1714, 2046, 2856
NmuCI GTSAC 4 cut(s) 147, 399, 556, 2902
NspI RCATGY 3 cut(s) 1047, 1212, 1850
NspV TTCGAA 2 cut(s) 2599, 2754
OliI CACNNNNGTG 1 cut(s) 830
PagI TCATGA 1 cut(s) 2239
PceI AGGCCT 1 cut(s) 2377
PcsI WCGNNNNNNNCGW 1 cut(s) 2751
PctI GAATGC 1 cut(s) 1222
PflFI GACNNNGTC 1 cut(s) 966
PfoI TCCNGGA 1 cut(s) 2053
PleI GAGTC 3 cut(s) 862, 2869, 2906
PpsI GAGTC 3 cut(s) 862, 2869, 2906
PshAI GACNNNNGTC 1 cut(s) 990
PsiI TTATAA 3 cut(s) 1242, 1983, 2786
Psp124BI GAGCTC 1 cut(s) 620
Psp6I CCWGG 5 cut(s) 938, 1014, 2053, 2550, 3004
PspFI CCCAGC 2 cut(s) 2111, 2261
PspGI CCWGG 5 cut(s) 938, 1014, 2053, 2550, 3004
PspN4I GGNNCC 4 cut(s) 172, 1714, 2046, 2856
PspPI GGNCC 1 cut(s) 725
PstI CTGCAG 2 cut(s) 1194, 1387
PstNI CAGNNNCTG 1 cut(s) 1198
PsuI RGATCY 6 cut(s) 7, 771, 800, 2192, 2420, 2587
PsyI GACNNNGTC 1 cut(s) 966
PvuII CAGCTG 2 cut(s) 326, 2837
RseI CAYNNNNRTG 3 cut(s) 830, 1062, 2004
SacI GAGCTC 1 cut(s) 620
SalI GTCGAC 1 cut(s) 1941
SaqAI TTAA 9 cut(s) 161, 183, 456, 563, 1023, 2097, 2247, 2502, 3063
Sau96I GGNCC 1 cut(s) 725
ScaI AGTACT 1 cut(s) 2125
SchI GAGTC 3 cut(s) 863, 2870, 2906
ScrFI CCNGG 6 cut(s) 312, 940, 1016, 2055, 2552, 3006
SduI GDGCHC 3 cut(s) 620, 1717, 2770
SexAI ACCWGGT 1 cut(s) 3004
SfaNI GCATC 1 cut(s) 2074
SfcI CTRYAG 3 cut(s) 1190, 1383, 2286
SfuI TTCGAA 2 cut(s) 2599, 2754
SinI GGWCC 1 cut(s) 725
SmiMI CAYNNNNRTG 3 cut(s) 830, 1062, 2004
SmlI CTYRAG 4 cut(s) 455, 709, 2583, 2769
SmoI CTYRAG 4 cut(s) 455, 709, 2583, 2769
SpeI ACTAGT 1 cut(s) 1993
SseBI AGGCCT 1 cut(s) 2377
SsiI CCGC 3 cut(s) 233, 2063, 3267
SspI AATATT 1 cut(s) 115
SstI GAGCTC 1 cut(s) 620
StuI AGGCCT 1 cut(s) 2377
StyD4I CCNGG 6 cut(s) 310, 938, 1014, 2053, 2550, 3004
StyI CCWWGG 4 cut(s) 580, 849, 1319, 1602
TaiI ACGT 3 cut(s) 640, 1079, 1262
TaqII GACCGA 2 cut(s) 2388, 2984
TatI WGTACW 4 cut(s) 186, 662, 1666, 2123
TauI GCSGC 1 cut(s) 3269
Tru1I TTAA 9 cut(s) 161, 183, 456, 563, 1023, 2097, 2247, 2502, 3063
Tru9I TTAA 9 cut(s) 161, 183, 456, 563, 1023, 2097, 2247, 2502, 3063
TscAI CASTG 8 cut(s) 618, 832, 1157, 2034, 2235, 2803, 3364, 3397
TseFI GTSAC 4 cut(s) 147, 399, 556, 2902
Tsp45I GTSAC 4 cut(s) 147, 399, 556, 2902
TspGWI ACGGA 4 cut(s) 537, 583, 2298, 3091
TspRI CASTG 8 cut(s) 618, 832, 1157, 2034, 2235, 2803, 3364, 3397
Tth111I GACNNNGTC 1 cut(s) 966
Vha464I CTTAAG 1 cut(s) 455
VpaK11BI GGWCC 1 cut(s) 725
XapI RAATTY 6 cut(s) 513, 1034, 1274, 2116, 2780, 3065
XbaI TCTAGA 3 cut(s) 299, 470, 2480
XceI RCATGY 3 cut(s) 1047, 1212, 1850
XmiI GTMKAC 1 cut(s) 1942
ZrmI AGTACT 1 cut(s) 2125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.