AT3G24310
MYB Family

transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009928
Physical Location & Seq
Reverse (-)
8811011 .. 8812483
1473 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G24310.1

Sequence Viewer

Length: 810 bp
ATGAGTTTGTGGGGAGGGATGGGAGGAGGATGGGGAATGGTAGAAGAAGGTTGGAGAAAAGGGCCTTGGACTGCTGAAGAAGACCGCCTTTTGATCGATTATGTGCAGCTTCACGGTGAAGGGCGATGGAACTCTGTTGCGAGGCTCGCGGGGTTGAAGAGAAATGGGAAAAGCTGCAGGTTAAGATGGGTTAACTACCTAAGACCAGACCTCAAGAGAGGACAAATCACTCCTCATGAAGAAACCATTATCCTTGAGTTACATGCTAAGTGGGGCAATAGGTGGTCCACGATTGCACGTAGTTTACCGGGAAGAACAGACAACGAAATCAAGAACTATTGGCGAACCCATTTCAAGAAGAAGACGAAGTCTCCAACTAACAGTGCGGAGAAGACAAAGAACCGAATCTTGAAGAGGCAACAATTTCAGCAGCAAAGACAAATGGAGTTGCAGCAAGAACAACAGTTGCTTCAATTCAATCAAATCGACATGAAAAAGATCATGTCGTTACTAGATGACGACAACAACAATGGTGATAACACCTTCAGCAGTAGCAGTAGTGGCGAAAGTGGAGCATTATATGTACCTCATCAGATCACACATTCAACAACAACTTCTGGTTGTGAACCAAATAGTAACGGGTATTACCCGGTGGTTCCGGTAACAATACCTGAGGCTAATGTGAATGAAGATAACGCTATTTGGGACGGTTTATGGAATCTGGATTTTGAAGGACAAGGAAGTTTTGGTGGCGCTGCTTGTGCCCCAAGGAAGCACTATTTCCAGAACATGGTCATTCCCTTCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

269

Amino Acids

30.79

Weight (kDa)

8.82

Isoelectric Point (pI)

53.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 20 - 67 1.1e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 23 - 81 1.5e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 73 - 117 4.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 77 - 131 5.4e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 168
AccB7I CCANNNNNTGG 1 cut(s) 790
AccII CGCG 1 cut(s) 149
AciI CCGC 3 cut(s) 85, 149, 386
AcuI CTGAAG 2 cut(s) 96, 529
AfaI GTAC 1 cut(s) 585
AfiI CCNNNNNNNGG 1 cut(s) 790
AgsI TTSAA 7 cut(s) 157, 355, 412, 473, 478, 606, 731
AjuI GAANNNNNNNTTGG 2 cut(s) 49, 81
AluBI AGCT 2 cut(s) 109, 174
AluI AGCT 2 cut(s) 109, 174
Alw26I GTCTC 1 cut(s) 375
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 5 cut(s) 106, 174, 430, 451, 755
AspLEI GCGC 1 cut(s) 755
AspS9I GGNCC 2 cut(s) 62, 285
AsuC2I CCSGG 2 cut(s) 309, 650
AsuHPI GGTGA 2 cut(s) 128, 545
AvaII GGWCC 1 cut(s) 285
AxyI CCTNAGG 1 cut(s) 672
BaeGI GKGCMC 1 cut(s) 766
BbsI GAAGAC 3 cut(s) 87, 368, 398
BbvI GCAGC 5 cut(s) 118, 161, 442, 463, 742
BccI CCATC 4 cut(s) 13, 24, 120, 180
BcnI CCSGG 2 cut(s) 309, 650
BcoDI GTCTC 1 cut(s) 375
BfaI CTAG 1 cut(s) 512
BfmI CTRYAG 1 cut(s) 175
BfoI RGCGCY 1 cut(s) 756
BfuAI ACCTGC 1 cut(s) 168
BisI GCNGC 5 cut(s) 107, 175, 431, 452, 756
BlsI GCNGC 5 cut(s) 108, 176, 432, 453, 757
Bme1390I CCNGG 2 cut(s) 309, 650
Bme18I GGWCC 1 cut(s) 285
BmgT120I GGNCC 2 cut(s) 62, 285
BmiI GGNNCC 1 cut(s) 657
BmrFI CCNGG 2 cut(s) 309, 650
BpiI GAAGAC 3 cut(s) 87, 368, 398
BpuEI CTTGAG 2 cut(s) 197, 275
BpuMI CCSGG 2 cut(s) 309, 650
Bsa29I ATCGAT 1 cut(s) 96
BsaAI YACGTR 1 cut(s) 299
BsaJI CCNNGG 2 cut(s) 65, 767
BsaWI WCCGGW 1 cut(s) 658
BsaXI ACNNNNNCTCC 2 cut(s) 355, 385
Bsc4I CCNNNNNNNGG 1 cut(s) 790
Bse21I CCTNAGG 1 cut(s) 672
BseCI ATCGAT 1 cut(s) 96
BseDI CCNNGG 2 cut(s) 65, 767
BseGI GGATG 2 cut(s) 24, 35
BseLI CCNNNNNNNGG 1 cut(s) 790
BseMII CTCAG 1 cut(s) 663
BseRI GAGGAG 2 cut(s) 39, 222
BseSI GKGCMC 1 cut(s) 766
BseXI GCAGC 5 cut(s) 118, 161, 442, 463, 742
BsgI GTGCAG 1 cut(s) 125
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 1 cut(s) 64
BshVI ATCGAT 1 cut(s) 96
BsiSI CCGG 3 cut(s) 308, 650, 659
BslFI GGGAC 1 cut(s) 719
BslI CCNNNNNNNGG 1 cut(s) 790
BsmAI GTCTC 1 cut(s) 375
BsmFI GGGAC 1 cut(s) 719
BsnI GGCC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 766
Bsp143I GATC 3 cut(s) 93, 498, 594
BspACI CCGC 3 cut(s) 85, 149, 386
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 1 cut(s) 664
BspDI ATCGAT 1 cut(s) 96
BspFNI CGCG 1 cut(s) 149
BspHI TCATGA 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 657
BspMAI CTGCAG 1 cut(s) 179
BspMI ACCTGC 1 cut(s) 168
BssECI CCNNGG 2 cut(s) 65, 767
BssMI GATC 3 cut(s) 93, 498, 594
BssT1I CCWWGG 2 cut(s) 65, 767
Bst4CI ACNGT 4 cut(s) 116, 383, 465, 710
Bst6I CTCTTC 2 cut(s) 152, 407
BstBAI YACGTR 1 cut(s) 299
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 3 cut(s) 200, 267, 672
BstF5I GGATG 2 cut(s) 24, 35
BstFNI CGCG 1 cut(s) 149
BstH2I RGCGCY 1 cut(s) 756
BstHHI GCGC 1 cut(s) 755
BstKTI GATC 3 cut(s) 96, 501, 597
BstMAI GTCTC 1 cut(s) 375
BstMBI GATC 3 cut(s) 93, 498, 594
BstMWI GCNNNNNNNGC 3 cut(s) 146, 561, 761
BstNSI RCATGY 1 cut(s) 266
BstSCI CCNGG 2 cut(s) 307, 648
BstSFI CTRYAG 1 cut(s) 175
BstSLI GKGCMC 1 cut(s) 766
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 5 cut(s) 118, 161, 442, 463, 742
BstV2I GAAGAC 3 cut(s) 87, 368, 398
Bsu15I ATCGAT 1 cut(s) 96
Bsu36I CCTNAGG 1 cut(s) 672
BsuRI GGCC 1 cut(s) 64
BsuTUI ATCGAT 1 cut(s) 96
BtgZI GCGATG 1 cut(s) 139
BtsCI GGATG 2 cut(s) 24, 35
BtsIMutI CAGTG 1 cut(s) 388
BveI ACCTGC 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 147
CciI TCATGA 1 cut(s) 235
CfoI GCGC 1 cut(s) 755
Cfr13I GGNCC 2 cut(s) 62, 285
ClaI ATCGAT 1 cut(s) 96
Csp6I GTAC 1 cut(s) 584
CviAII CATG 5 cut(s) 236, 263, 490, 502, 790
CviJI RGCY 5 cut(s) 64, 109, 145, 174, 677
CviKI_1 RGCY 5 cut(s) 64, 109, 145, 174, 677
CviQI GTAC 1 cut(s) 584
DdeI CTNAG 3 cut(s) 200, 267, 672
DpnI GATC 3 cut(s) 95, 500, 596
DpnII GATC 3 cut(s) 93, 498, 594
Eam1104I CTCTTC 2 cut(s) 152, 407
EarI CTCTTC 2 cut(s) 152, 407
Eco130I CCWWGG 2 cut(s) 65, 767
Eco47I GGWCC 1 cut(s) 285
Eco57I CTGAAG 2 cut(s) 96, 529
Eco81I CCTNAGG 1 cut(s) 672
EcoO109I RGGNCCY 1 cut(s) 62
EcoT14I CCWWGG 2 cut(s) 65, 767
ErhI CCWWGG 2 cut(s) 65, 767
FaeI CATG 5 cut(s) 239, 266, 493, 505, 793
FaiI YATR 9 cut(s) 102, 237, 264, 491, 503, 580, 582, 715, 791
FalI AAGNNNNNCTT 2 cut(s) 72, 104
FaqI GGGAC 1 cut(s) 719
FatI CATG 5 cut(s) 235, 262, 489, 501, 789
FauI CCCGC 1 cut(s) 142
Fnu4HI GCNGC 5 cut(s) 107, 175, 431, 452, 756
FokI GGATG 2 cut(s) 31, 42
Fsp4HI GCNGC 5 cut(s) 107, 175, 431, 452, 756
FspBI CTAG 1 cut(s) 512
GlaI GCGC 1 cut(s) 754
GluI GCNGC 5 cut(s) 107, 175, 431, 452, 756
HaeII RGCGCY 1 cut(s) 756
HaeIII GGCC 1 cut(s) 64
HapII CCGG 3 cut(s) 308, 650, 659
HhaI GCGC 1 cut(s) 755
Hin1II CATG 5 cut(s) 239, 266, 493, 505, 793
Hin6I GCGC 1 cut(s) 753
HinP1I GCGC 1 cut(s) 753
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 2 cut(s) 405, 718
HpaI GTTAAC 1 cut(s) 193
HpaII CCGG 3 cut(s) 308, 650, 659
HphI GGTGA 2 cut(s) 128, 545
Hpy166II GTNNAC 4 cut(s) 193, 288, 305, 626
Hpy188I TCNGA 1 cut(s) 594
Hpy188III TCNNGA 7 cut(s) 214, 236, 331, 355, 409, 722, 784
Hpy8I GTNNAC 4 cut(s) 193, 288, 305, 626
HpyAV CCTTC 4 cut(s) 41, 113, 553, 725
HpyCH4III ACNGT 4 cut(s) 116, 383, 465, 710
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 4 cut(s) 106, 177, 296, 451
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 561, 761
HpyF3I CTNAG 3 cut(s) 200, 267, 672
HpySE526I ACGT 1 cut(s) 298
Hsp92II CATG 5 cut(s) 239, 266, 493, 505, 793
HspAI GCGC 1 cut(s) 753
KspAI GTTAAC 1 cut(s) 193
Kzo9I GATC 3 cut(s) 93, 498, 594
LmnI GCTCC 1 cut(s) 572
LpnPI CCDG 9 cut(s) 163, 219, 321, 603, 663, 672, 684, 707, 797
Lsp1109I GCAGC 5 cut(s) 118, 161, 442, 463, 742
MaeI CTAG 1 cut(s) 512
MaeII ACGT 1 cut(s) 298
MaeIII GTNAC 4 cut(s) 258, 507, 635, 661
MalI GATC 3 cut(s) 95, 500, 596
MboI GATC 3 cut(s) 93, 498, 594
MhlI GDGCHC 1 cut(s) 766
MluCI AATT 2 cut(s) 422, 473
MmeI TCCRAC 2 cut(s) 32, 398
MseI TTAA 3 cut(s) 182, 192, 808
MspI CCGG 3 cut(s) 308, 650, 659
MspR9I CCNGG 2 cut(s) 309, 650
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 3 cut(s) 146, 561, 761
NciI CCSGG 2 cut(s) 309, 650
NdeII GATC 3 cut(s) 93, 498, 594
NlaIII CATG 5 cut(s) 239, 266, 493, 505, 793
NlaIV GGNNCC 1 cut(s) 657
NspI RCATGY 1 cut(s) 266
PagI TCATGA 1 cut(s) 235
PfeI GAWTC 2 cut(s) 405, 718
PflFI GACNNNGTC 1 cut(s) 367
PflMI CCANNNNNTGG 1 cut(s) 790
PkrI GCNGC 5 cut(s) 108, 176, 432, 453, 757
Ppu21I YACGTR 1 cut(s) 299
PspN4I GGNNCC 1 cut(s) 657
PspPI GGNCC 2 cut(s) 62, 285
PstI CTGCAG 1 cut(s) 179
PsyI GACNNNGTC 1 cut(s) 367
RsaI GTAC 1 cut(s) 585
RsaNI GTAC 1 cut(s) 584
SaqAI TTAA 3 cut(s) 182, 192, 808
SatI GCNGC 5 cut(s) 107, 175, 431, 452, 756
Sau3AI GATC 3 cut(s) 93, 498, 594
Sau96I GGNCC 2 cut(s) 62, 285
ScrFI CCNGG 2 cut(s) 309, 650
SduI GDGCHC 1 cut(s) 766
SfcI CTRYAG 1 cut(s) 175
SinI GGWCC 1 cut(s) 285
SmlI CTYRAG 2 cut(s) 212, 254
SmoI CTYRAG 2 cut(s) 212, 254
Sse9I AATT 2 cut(s) 422, 473
SsiI CCGC 3 cut(s) 85, 149, 386
SspMI CTAG 1 cut(s) 512
StyD4I CCNGG 2 cut(s) 307, 648
StyI CCWWGG 2 cut(s) 65, 767
TaaI ACNGT 4 cut(s) 116, 383, 465, 710
TaiI ACGT 1 cut(s) 301
TaqI TCGA 2 cut(s) 96, 486
TasI AATT 2 cut(s) 422, 473
TfiI GAWTC 2 cut(s) 405, 718
Tru1I TTAA 3 cut(s) 182, 192, 808
Tru9I TTAA 3 cut(s) 182, 192, 808
TscAI CASTG 1 cut(s) 388
TseI GCWGC 5 cut(s) 106, 174, 430, 451, 755
TspDTI ATGAA 3 cut(s) 252, 506, 702
TspRI CASTG 1 cut(s) 388
Tth111I GACNNNGTC 1 cut(s) 367
Van91I CCANNNNNTGG 1 cut(s) 790
VpaK11BI GGWCC 1 cut(s) 285
XceI RCATGY 1 cut(s) 266
XspI CTAG 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.