transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G24310 |
| fragaria_vesca | FvH4_4g05070 |
| malus_domestica | MD13G1224400.v1.1 MD16G1228600.v1.1 MD16G1229600.v1.1 MD16G1229800.v1.1 |
| prunus_persica | Prupe.1G051100_v2.0.a1 Prupe.1G051300_v2.0.a1 |
| pyrus_communis | pycom16g19130 pycom16g19160 |
| rosa_chinensis | RchiOBHm_Chr4g0396001 |
| rosa_laevigata | RLG00000009582 |
| rosa_multiflora | Rmu_co8365561.1_g000001 Rmu_sc0012989.1_g000008 |
| rosa_roxburghii | Rroxscaffold_5G00340790 |
| rosa_rugosa | Rorug03G0352900 |
| rosa_samantha | Rh4AG064500 Rh4AG066100 Rh4BG063200 Rh4DG059800 |
| rosa_wichuraiana | Rw4G005220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfiI | CCNNNNNNNGG | 1 cut(s) | 223 |
| AflII | CTTAAG | 1 cut(s) | 218 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 55, 87 |
| AluBI | AGCT | 3 cut(s) | 23, 180, 265 |
| AluI | AGCT | 3 cut(s) | 23, 180, 265 |
| AoxI | GGCC | 1 cut(s) | 209 |
| ApeKI | GCWGC | 2 cut(s) | 20, 180 |
| AspS9I | GGNCC | 1 cut(s) | 68 |
| AsuHPI | GGTGA | 2 cut(s) | 134, 208 |
| AvaII | GGWCC | 1 cut(s) | 68 |
| BbvI | GCAGC | 2 cut(s) | 32, 167 |
| BccI | CCATC | 2 cut(s) | 10, 126 |
| BfaI | CTAG | 3 cut(s) | 147, 260, 273 |
| BfmI | CTRYAG | 1 cut(s) | 181 |
| BfrI | CTTAAG | 1 cut(s) | 218 |
| BisI | GCNGC | 2 cut(s) | 21, 181 |
| BlsI | GCNGC | 2 cut(s) | 22, 182 |
| Bme18I | GGWCC | 1 cut(s) | 68 |
| BmgT120I | GGNCC | 1 cut(s) | 68 |
| BmiI | GGNNCC | 1 cut(s) | 69 |
| BsaJI | CCNNGG | 1 cut(s) | 71 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 52, 82 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 223 |
| BseDI | CCNNGG | 1 cut(s) | 71 |
| BseGI | GGATG | 1 cut(s) | 18 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 223 |
| BseMII | CTCAG | 3 cut(s) | 72, 179, 197 |
| BseRI | GAGGAG | 1 cut(s) | 228 |
| BseXI | GCAGC | 2 cut(s) | 32, 167 |
| BshFI | GGCC | 1 cut(s) | 211 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 223 |
| BsnI | GGCC | 1 cut(s) | 211 |
| BspANI | GGCC | 1 cut(s) | 211 |
| BspCNI | CTCAG | 3 cut(s) | 73, 180, 198 |
| BspHI | TCATGA | 1 cut(s) | 241 |
| BspLI | GGNNCC | 1 cut(s) | 69 |
| BspMAI | CTGCAG | 1 cut(s) | 185 |
| BspTI | CTTAAG | 1 cut(s) | 218 |
| BssECI | CCNNGG | 1 cut(s) | 71 |
| BssT1I | CCWWGG | 1 cut(s) | 71 |
| Bst6I | CTCTTC | 2 cut(s) | 45, 240 |
| BstAFI | CTTAAG | 1 cut(s) | 218 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 3 cut(s) | 81, 188, 206 |
| BstF5I | GGATG | 1 cut(s) | 18 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 152 |
| BstNSI | RCATGY | 1 cut(s) | 272 |
| BstSFI | CTRYAG | 1 cut(s) | 181 |
| BstV1I | GCAGC | 2 cut(s) | 32, 167 |
| BsuRI | GGCC | 1 cut(s) | 211 |
| BtsCI | GGATG | 1 cut(s) | 18 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CciI | TCATGA | 1 cut(s) | 241 |
| Cfr13I | GGNCC | 1 cut(s) | 68 |
| CviAII | CATG | 3 cut(s) | 119, 242, 269 |
| CviJI | RGCY | 7 cut(s) | 23, 115, 146, 151, 180, 211, 265 |
| CviKI_1 | RGCY | 7 cut(s) | 23, 115, 146, 151, 180, 211, 265 |
| DdeI | CTNAG | 3 cut(s) | 81, 188, 206 |
| Eam1104I | CTCTTC | 2 cut(s) | 45, 240 |
| EarI | CTCTTC | 2 cut(s) | 45, 240 |
| Eco130I | CCWWGG | 1 cut(s) | 71 |
| Eco47I | GGWCC | 1 cut(s) | 68 |
| EcoO109I | RGGNCCY | 1 cut(s) | 68 |
| EcoT14I | CCWWGG | 1 cut(s) | 71 |
| ErhI | CCWWGG | 1 cut(s) | 71 |
| FaeI | CATG | 3 cut(s) | 122, 245, 272 |
| FaiI | YATR | 7 cut(s) | 27, 29, 108, 120, 243, 254, 270 |
| FatI | CATG | 3 cut(s) | 118, 241, 268 |
| FauNDI | CATATG | 1 cut(s) | 27 |
| Fnu4HI | GCNGC | 2 cut(s) | 21, 181 |
| FokI | GGATG | 1 cut(s) | 25 |
| Fsp4HI | GCNGC | 2 cut(s) | 21, 181 |
| FspBI | CTAG | 3 cut(s) | 147, 260, 273 |
| GluI | GCNGC | 2 cut(s) | 21, 181 |
| HaeIII | GGCC | 1 cut(s) | 211 |
| Hin1II | CATG | 3 cut(s) | 122, 245, 272 |
| HphI | GGTGA | 2 cut(s) | 134, 208 |
| Hpy188I | TCNGA | 2 cut(s) | 82, 207 |
| Hpy188III | TCNNGA | 2 cut(s) | 242, 260 |
| HpyAV | CCTTC | 1 cut(s) | 119 |
| HpyCH4V | TGCA | 2 cut(s) | 155, 183 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 152 |
| HpyF3I | CTNAG | 3 cut(s) | 81, 188, 206 |
| Hsp92II | CATG | 3 cut(s) | 122, 245, 272 |
| LpnPI | CCDG | 3 cut(s) | 141, 225, 271 |
| Lsp1109I | GCAGC | 2 cut(s) | 32, 167 |
| MaeI | CTAG | 3 cut(s) | 147, 260, 273 |
| MboII | GAAGA | 5 cut(s) | 59, 62, 98, 141, 257 |
| MluCI | AATT | 2 cut(s) | 199, 255 |
| MmeI | TCCRAC | 1 cut(s) | 38 |
| MnlI | CCTC | 6 cut(s) | 46, 76, 183, 201, 216, 249 |
| MseI | TTAA | 1 cut(s) | 219 |
| MspCI | CTTAAG | 1 cut(s) | 218 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 152 |
| NdeI | CATATG | 1 cut(s) | 27 |
| NlaIII | CATG | 3 cut(s) | 122, 245, 272 |
| NlaIV | GGNNCC | 1 cut(s) | 69 |
| NspI | RCATGY | 1 cut(s) | 272 |
| PagI | TCATGA | 1 cut(s) | 241 |
| PkrI | GCNGC | 2 cut(s) | 22, 182 |
| PpuMI | RGGWCCY | 1 cut(s) | 68 |
| Psp5II | RGGWCCY | 1 cut(s) | 68 |
| PspN4I | GGNNCC | 1 cut(s) | 69 |
| PspPI | GGNCC | 1 cut(s) | 68 |
| PspPPI | RGGWCCY | 1 cut(s) | 68 |
| PstI | CTGCAG | 1 cut(s) | 185 |
| SaqAI | TTAA | 1 cut(s) | 219 |
| SatI | GCNGC | 2 cut(s) | 21, 181 |
| Sau96I | GGNCC | 1 cut(s) | 68 |
| SetI | ASST | 7 cut(s) | 25, 182, 194, 219, 267, 278, 290 |
| SfcI | CTRYAG | 1 cut(s) | 181 |
| SinI | GGWCC | 1 cut(s) | 68 |
| SmlI | CTYRAG | 1 cut(s) | 218 |
| SmoI | CTYRAG | 1 cut(s) | 218 |
| Sse9I | AATT | 2 cut(s) | 199, 255 |
| SspMI | CTAG | 3 cut(s) | 147, 260, 273 |
| StyI | CCWWGG | 1 cut(s) | 71 |
| TasI | AATT | 2 cut(s) | 199, 255 |
| Tru1I | TTAA | 1 cut(s) | 219 |
| Tru9I | TTAA | 1 cut(s) | 219 |
| TseI | GCWGC | 2 cut(s) | 20, 180 |
| TspDTI | ATGAA | 2 cut(s) | 107, 258 |
| Vha464I | CTTAAG | 1 cut(s) | 218 |
| VpaK11BI | GGWCC | 1 cut(s) | 68 |
| XbaI | TCTAGA | 1 cut(s) | 259 |
| XceI | RCATGY | 1 cut(s) | 272 |
| XspI | CTAG | 3 cut(s) | 147, 260, 273 |