Rroxscaffold_5G00340790
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0009928
Physical Location & Seq
Forward (+)
9296667 .. 9297873
1207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00340790.1

Sequence Viewer

Length: 807 bp
ATGTATTGTGAGATGATGGCAGCTCATATGGGTTGGGGAATAATAGAAGAAGAGGGTTGGAGAAAGGGTCCTTGGACTTCTGAGGAAGATAGATTGCTTATTGAGTATGTAAGGCTTCATGGTGAAGGAAGATGGAACTCTGTGGCTAGGCTTGCAGGACTGAAAAGAAATGGAAAGAGCTGCAGACTGAGGTGGGTGAATTATCTGAGGCCAGACCTTAAGAGGGGGCAGATAACTCCTCATGAAGAGAGCATAATTCTAGAGCTACATGCTAGGTGGGGGAACAGGTGGTCAACGATTGCAAGAAGCTTGCCTGGGAGGACTGATAATGAGATCAAGAACTACTGGAGGACCCATTTCAAGAAAAAGGCCAAAGTGCCTTCTGATGCCTCTGAGAAGGCCAAAACTCGCCTCTTACGGCGGCAACAGTTTCATCATCAACAGCAGCAGCAGCAGCAGCAACAATTGCAGCTGATTAATCAAGCAGACATGAAAAGAATCATGGCCTTGCTGGATGAAAATGACACCAAAATATCGTCGTGGCCACCTCAAGCAGCCCAAGGTAAGCAGGACGTGGACACTAGTACTACAGCATACCCTAATCACACAAGTACTGAGGAGCAAGGCTTCTTCTATTCTATGCTCAATGGTAATGTGCCTCATGTTGCTGAAGCTTCTTCCAGCGAGGACAGTTTTCTGTGGGATGGCTTGTGGAACTTGGATGATGTCCATGGCAATTTTACCACTTCAGCTTGTGCAACAGGCAAAGCTAGTACTTTTCACAACTTTGTGGTTCCCTTCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

268

Amino Acids

31.0

Weight (kDa)

8.63

Isoelectric Point (pI)

60.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 22 - 69 2.5e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 25 - 83 1.3e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 75 - 119 1e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 79 - 125 1.9e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 421
AcoI YGGCCR 1 cut(s) 542
AcuI CTGAAG 2 cut(s) 690, 732
AfaI GTAC 3 cut(s) 586, 613, 775
AfiI CCNNNNNNNGG 1 cut(s) 223
AflII CTTAAG 1 cut(s) 218
AgsI TTSAA 1 cut(s) 361
AhlI ACTAGT 1 cut(s) 581
AjiI CACGTC 1 cut(s) 574
AjnI CCWGG 1 cut(s) 313
AjuI GAANNNNNNNTTGG 2 cut(s) 55, 87
AluBI AGCT 8 cut(s) 23, 180, 265, 309, 472, 674, 752, 770
AluI AGCT 8 cut(s) 23, 180, 265, 309, 472, 674, 752, 770
AoxI GGCC 5 cut(s) 209, 369, 399, 504, 542
ApeKI GCWGC 9 cut(s) 20, 180, 445, 448, 451, 454, 457, 469, 554
AseI ATTAAT 1 cut(s) 477
AspS9I GGNCC 2 cut(s) 68, 351
AsuHPI GGTGA 2 cut(s) 134, 208
AvaII GGWCC 2 cut(s) 68, 351
BalI TGGCCA 1 cut(s) 544
BbvI GCAGC 9 cut(s) 32, 167, 457, 460, 463, 466, 469, 481, 566
BccI CCATC 3 cut(s) 10, 126, 698
BceAI ACGGC 1 cut(s) 434
BciT130I CCWGG 1 cut(s) 315
BcuI ACTAGT 1 cut(s) 581
BfaI CTAG 5 cut(s) 147, 260, 273, 582, 771
BfmI CTRYAG 2 cut(s) 181, 588
BfrI CTTAAG 1 cut(s) 218
BmcAI AGTACT 3 cut(s) 586, 613, 775
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 2 cut(s) 68, 351
BmgBI CACGTC 1 cut(s) 574
BmgT120I GGNCC 2 cut(s) 68, 351
BmiI GGNNCC 3 cut(s) 69, 353, 795
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 1 cut(s) 376
BpmI CTGGAG 1 cut(s) 367
BpuEI CTTGAG 1 cut(s) 534
BsaJI CCNNGG 4 cut(s) 71, 314, 559, 730
BsaXI ACNNNNNCTCC 2 cut(s) 52, 82
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse1I ACTGG 1 cut(s) 350
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 4 cut(s) 71, 314, 559, 730
BseGI GGATG 3 cut(s) 520, 709, 727
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMII CTCAG 5 cut(s) 72, 179, 197, 384, 606
BseNI ACTGG 1 cut(s) 350
BseRI GAGGAG 2 cut(s) 228, 632
BseXI GCAGC 9 cut(s) 32, 167, 457, 460, 463, 466, 469, 481, 566
BshFI GGCC 5 cut(s) 211, 371, 401, 506, 544
BslI CCNNNNNNNGG 1 cut(s) 223
BsnI GGCC 5 cut(s) 211, 371, 401, 506, 544
Bsp143I GATC 1 cut(s) 333
Bsp19I CCATGG 1 cut(s) 730
BspACI CCGC 1 cut(s) 421
BspANI GGCC 5 cut(s) 211, 371, 401, 506, 544
BspCNI CTCAG 5 cut(s) 73, 180, 198, 385, 607
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 3 cut(s) 69, 353, 795
BspMAI CTGCAG 1 cut(s) 185
BspTI CTTAAG 1 cut(s) 218
BsrI ACTGG 1 cut(s) 350
BssECI CCNNGG 4 cut(s) 71, 314, 559, 730
BssMI GATC 1 cut(s) 333
BssT1I CCWWGG 3 cut(s) 71, 559, 730
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 2 cut(s) 429, 692
Bst6I CTCTTC 2 cut(s) 45, 240
BstAFI CTTAAG 1 cut(s) 218
BstAPI GCANNNNNTGC 1 cut(s) 466
BstC8I GCNNGC 2 cut(s) 153, 311
BstDEI CTNAG 5 cut(s) 81, 188, 206, 393, 615
BstDSI CCRYGG 1 cut(s) 730
BstF5I GGATG 3 cut(s) 520, 709, 727
BstKTI GATC 1 cut(s) 336
BstMBI GATC 1 cut(s) 333
BstMWI GCNNNNNNNGC 5 cut(s) 152, 451, 454, 457, 466
BstNI CCWGG 1 cut(s) 315
BstNSI RCATGY 1 cut(s) 272
BstSCI CCNGG 1 cut(s) 313
BstSFI CTRYAG 2 cut(s) 181, 588
BstV1I GCAGC 9 cut(s) 32, 167, 457, 460, 463, 466, 469, 481, 566
BsuRI GGCC 5 cut(s) 211, 371, 401, 506, 544
BtgI CCRYGG 1 cut(s) 730
BtrI CACGTC 1 cut(s) 574
BtsCI GGATG 3 cut(s) 520, 709, 727
Cac8I GCNNGC 2 cut(s) 153, 311
CciI TCATGA 1 cut(s) 241
Cfr13I GGNCC 2 cut(s) 68, 351
Csp6I GTAC 3 cut(s) 585, 612, 774
CviAII CATG 7 cut(s) 119, 242, 269, 490, 502, 662, 731
CviQI GTAC 3 cut(s) 585, 612, 774
DdeI CTNAG 5 cut(s) 81, 188, 206, 393, 615
DpnI GATC 1 cut(s) 335
DpnII GATC 1 cut(s) 333
EaeI YGGCCR 1 cut(s) 542
Eam1104I CTCTTC 2 cut(s) 45, 240
EarI CTCTTC 2 cut(s) 45, 240
Eco130I CCWWGG 3 cut(s) 71, 559, 730
Eco47I GGWCC 2 cut(s) 68, 351
Eco57I CTGAAG 2 cut(s) 690, 732
EcoO109I RGGNCCY 2 cut(s) 68, 351
EcoRII CCWGG 1 cut(s) 313
EcoT14I CCWWGG 3 cut(s) 71, 559, 730
ErhI CCWWGG 3 cut(s) 71, 559, 730
FaeI CATG 7 cut(s) 122, 245, 272, 493, 505, 665, 734
FatI CATG 7 cut(s) 118, 241, 268, 489, 501, 661, 730
FauNDI CATATG 1 cut(s) 27
FokI GGATG 3 cut(s) 527, 716, 734
FspBI CTAG 5 cut(s) 147, 260, 273, 582, 771
GsuI CTGGAG 1 cut(s) 367
HaeIII GGCC 5 cut(s) 211, 371, 401, 506, 544
Hin1II CATG 7 cut(s) 122, 245, 272, 493, 505, 665, 734
HincII GTYRAC 1 cut(s) 294
HindII GTYRAC 1 cut(s) 294
HindIII AAGCTT 2 cut(s) 307, 672
HinfI GANTC 1 cut(s) 498
HphI GGTGA 2 cut(s) 134, 208
Hpy166II GTNNAC 2 cut(s) 294, 577
Hpy188I TCNGA 4 cut(s) 82, 207, 385, 394
Hpy188III TCNNGA 4 cut(s) 242, 260, 337, 361
Hpy8I GTNNAC 2 cut(s) 294, 577
Hpy99I CGWCG 1 cut(s) 541
HpyAV CCTTC 3 cut(s) 119, 390, 391
HpyCH4III ACNGT 2 cut(s) 429, 692
HpyCH4IV ACGT 1 cut(s) 573
HpyCH4V TGCA 5 cut(s) 155, 183, 302, 469, 758
HpyF10VI GCNNNNNNNGC 5 cut(s) 152, 451, 454, 457, 466
HpyF3I CTNAG 5 cut(s) 81, 188, 206, 393, 615
HpySE526I ACGT 1 cut(s) 573
Hsp92II CATG 7 cut(s) 122, 245, 272, 493, 505, 665, 734
Kzo9I GATC 1 cut(s) 333
LmnI GCTCC 1 cut(s) 619
Lsp1109I GCAGC 9 cut(s) 32, 167, 457, 460, 463, 466, 469, 481, 566
LweI GCATC 1 cut(s) 376
MaeI CTAG 5 cut(s) 147, 260, 273, 582, 771
MaeII ACGT 1 cut(s) 573
MalI GATC 1 cut(s) 335
MboI GATC 1 cut(s) 333
MboII GAAGA 7 cut(s) 59, 62, 98, 141, 257, 622, 669
MfeI CAATTG 1 cut(s) 464
MlsI TGGCCA 1 cut(s) 544
MluCI AATT 4 cut(s) 199, 255, 464, 736
MluNI TGGCCA 1 cut(s) 544
MmeI TCCRAC 1 cut(s) 38
Mox20I TGGCCA 1 cut(s) 544
MscI TGGCCA 1 cut(s) 544
MseI TTAA 2 cut(s) 219, 477
Msp20I TGGCCA 1 cut(s) 544
MspA1I CMGCKG 1 cut(s) 472
MspCI CTTAAG 1 cut(s) 218
MspR9I CCNGG 1 cut(s) 315
MunI CAATTG 1 cut(s) 464
MvaI CCWGG 1 cut(s) 315
MwoI GCNNNNNNNGC 5 cut(s) 152, 451, 454, 457, 466
NcoI CCATGG 1 cut(s) 730
NdeI CATATG 1 cut(s) 27
NdeII GATC 1 cut(s) 333
NlaIII CATG 7 cut(s) 122, 245, 272, 493, 505, 665, 734
NlaIV GGNNCC 3 cut(s) 69, 353, 795
NspI RCATGY 1 cut(s) 272
PagI TCATGA 1 cut(s) 241
PfeI GAWTC 1 cut(s) 498
PpuMI RGGWCCY 2 cut(s) 68, 351
PshBI ATTAAT 1 cut(s) 477
Psp5II RGGWCCY 2 cut(s) 68, 351
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 3 cut(s) 69, 353, 795
PspPI GGNCC 2 cut(s) 68, 351
PspPPI RGGWCCY 2 cut(s) 68, 351
PstI CTGCAG 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 472
RsaI GTAC 3 cut(s) 586, 613, 775
RsaNI GTAC 3 cut(s) 585, 612, 774
SaqAI TTAA 2 cut(s) 219, 477
Sau3AI GATC 1 cut(s) 333
Sau96I GGNCC 2 cut(s) 68, 351
ScaI AGTACT 3 cut(s) 586, 613, 775
ScrFI CCNGG 1 cut(s) 315
SfaNI GCATC 1 cut(s) 376
SfcI CTRYAG 2 cut(s) 181, 588
SinI GGWCC 2 cut(s) 68, 351
SmlI CTYRAG 2 cut(s) 218, 549
SmoI CTYRAG 2 cut(s) 218, 549
SpeI ACTAGT 1 cut(s) 581
Sse9I AATT 4 cut(s) 199, 255, 464, 736
SsiI CCGC 1 cut(s) 421
SspMI CTAG 5 cut(s) 147, 260, 273, 582, 771
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 3 cut(s) 71, 559, 730
TaaI ACNGT 2 cut(s) 429, 692
TaiI ACGT 1 cut(s) 576
TasI AATT 4 cut(s) 199, 255, 464, 736
TatI WGTACW 3 cut(s) 584, 611, 773
TauI GCSGC 1 cut(s) 424
TfiI GAWTC 1 cut(s) 498
Tru1I TTAA 2 cut(s) 219, 477
Tru9I TTAA 2 cut(s) 219, 477
TseI GCWGC 9 cut(s) 20, 180, 445, 448, 451, 454, 457, 469, 554
TspDTI ATGAA 5 cut(s) 107, 258, 422, 506, 531
Vha464I CTTAAG 1 cut(s) 218
VpaK11BI GGWCC 2 cut(s) 68, 351
VspI ATTAAT 1 cut(s) 477
XbaI TCTAGA 1 cut(s) 259
XceI RCATGY 1 cut(s) 272
XspI CTAG 5 cut(s) 147, 260, 273, 582, 771
ZrmI AGTACT 3 cut(s) 586, 613, 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.