FvH4_4g05070
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0009928
Physical Location & Seq
Forward (+)
4390975 .. 4392582
1608 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g05070.t1

Sequence Viewer

Length: 795 bp
ATGTATTGTGGGATGATGGCAGCTCATATGGGTTGGGGTATAATAGAAGAAGAGGGTTGGAGAAAGGGTCCCTGGACTTCTGAGGAAGATAGGTTGCTTATTGAGTATGTAAGGCTTCATGGTGAAGGAAGATGGAACTCTGTGGCTAGGCTTGCAGGATTGAAAAGGAATGGAAAGAGCTGCAGACTGAGATGGGTGAACTACTTGAGGCCAGACCTTAAGAGGGGACAGATAACTCCTCATGAAGAGAGCATAATTCTACAGCTGCATGCTAGGTGGGGGAATAGGTGGTCAACGATTGCAAGAAGCTTGCCTGGGAGGACTGATAATGAGATCAAGAACTACTGGAGAACCCATTTCAAGAAAAAGGCTAAAGTGCCTTCTGATGCCTCTGAGAAGGCTAAAAGTCGCCTCTTACGGCGGCAACAGTTTCACCAGCAACAGCAGCAACAACAGCAGCAGCATCAAGCAGACATGAAAAGAATCATGGCCTTGCTGGATGAAAATGACACCAAAATATCGTCGTGGCCGCCTCAAGCAGCCCAAGGTAATCAGGACATGGATACTACTAGTACTACTGCATTCCACAACCACACATGTACTGAGGAGCAAGGCTTCTTCTATTCTATGCTCAATGGTAATGTGCCTCATGTTGTTGAAGCTTCTTCCAGTGAAGACAGTTTTCTGTGGGATGGCCTGTGGAACTTGGATGATGTCCATGGCAATTTCACCACTTCAGCTTGTGCAACTGGCAAAGCTAGTACTTTCCACAACTTTGTGGTTCCCTTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

265

Amino Acids

30.5

Weight (kDa)

8.87

Isoelectric Point (pI)

63.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 22 - 69 2.4e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 25 - 83 1.7e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 75 - 119 1.1e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 79 - 125 9.9e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 421, 530
AcoI YGGCCR 1 cut(s) 527
AcuI CTGAAG 1 cut(s) 720
AfaI GTAC 3 cut(s) 574, 601, 763
AfiI CCNNNNNNNGG 1 cut(s) 223
AflII CTTAAG 1 cut(s) 218
AflIII ACRYGT 1 cut(s) 596
AgsI TTSAA 3 cut(s) 163, 361, 659
AhlI ACTAGT 1 cut(s) 569
AjnI CCWGG 2 cut(s) 71, 313
AluBI AGCT 7 cut(s) 23, 180, 265, 309, 662, 740, 758
AluI AGCT 7 cut(s) 23, 180, 265, 309, 662, 740, 758
AoxI GGCC 4 cut(s) 209, 489, 527, 694
ApeKI GCWGC 7 cut(s) 20, 180, 265, 445, 457, 460, 539
AspS9I GGNCC 1 cut(s) 68
AsuHPI GGTGA 4 cut(s) 134, 208, 425, 721
AvaII GGWCC 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 681
BbvI GCAGC 7 cut(s) 32, 167, 252, 457, 469, 472, 551
BccI CCATC 4 cut(s) 10, 126, 186, 686
BceAI ACGGC 1 cut(s) 434
BciT130I CCWGG 2 cut(s) 73, 315
BciVI GTATCC 1 cut(s) 556
BcuI ACTAGT 1 cut(s) 569
BfaI CTAG 4 cut(s) 147, 273, 570, 759
BfmI CTRYAG 2 cut(s) 181, 260
BfrI CTTAAG 1 cut(s) 218
BfuI GTATCC 1 cut(s) 556
BisI GCNGC 9 cut(s) 21, 181, 266, 422, 446, 458, 461, 530, 540
BlsI GCNGC 9 cut(s) 22, 182, 267, 423, 447, 459, 462, 531, 541
BmcAI AGTACT 2 cut(s) 574, 763
Bme1390I CCNGG 2 cut(s) 73, 315
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 68
BmiI GGNNCC 3 cut(s) 69, 70, 783
BmrFI CCNGG 2 cut(s) 73, 315
BmsI GCATC 2 cut(s) 376, 472
BpiI GAAGAC 1 cut(s) 681
BpmI CTGGAG 1 cut(s) 367
BpuEI CTTGAG 2 cut(s) 226, 519
BsaJI CCNNGG 4 cut(s) 71, 314, 544, 718
BsaXI ACNNNNNCTCC 2 cut(s) 52, 82
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse1I ACTGG 3 cut(s) 350, 669, 754
BseBI CCWGG 2 cut(s) 73, 315
BseDI CCNNGG 4 cut(s) 71, 314, 544, 718
BseGI GGATG 4 cut(s) 18, 505, 697, 715
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMII CTCAG 4 cut(s) 72, 179, 384, 594
BseNI ACTGG 3 cut(s) 350, 669, 754
BseRI GAGGAG 2 cut(s) 228, 620
BseXI GCAGC 7 cut(s) 32, 167, 252, 457, 469, 472, 551
BshFI GGCC 4 cut(s) 211, 491, 529, 696
BslFI GGGAC 2 cut(s) 54, 240
BslI CCNNNNNNNGG 1 cut(s) 223
BsmFI GGGAC 2 cut(s) 54, 240
BsmI GAATGC 1 cut(s) 581
BsnI GGCC 4 cut(s) 211, 491, 529, 696
Bsp143I GATC 1 cut(s) 333
Bsp19I CCATGG 1 cut(s) 718
BspACI CCGC 2 cut(s) 421, 530
BspANI GGCC 4 cut(s) 211, 491, 529, 696
BspCNI CTCAG 4 cut(s) 73, 180, 385, 595
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 3 cut(s) 69, 70, 783
BspMAI CTGCAG 1 cut(s) 185
BspTI CTTAAG 1 cut(s) 218
BsrI ACTGG 3 cut(s) 350, 669, 754
BssECI CCNNGG 4 cut(s) 71, 314, 544, 718
BssMI GATC 1 cut(s) 333
BssT1I CCWWGG 2 cut(s) 544, 718
Bst2UI CCWGG 2 cut(s) 73, 315
Bst4CI ACNGT 2 cut(s) 429, 680
Bst6I CTCTTC 2 cut(s) 45, 240
BstAFI CTTAAG 1 cut(s) 218
BstC8I GCNNGC 3 cut(s) 153, 270, 311
BstDEI CTNAG 4 cut(s) 81, 188, 393, 603
BstDSI CCRYGG 1 cut(s) 718
BstF5I GGATG 4 cut(s) 18, 505, 697, 715
BstKTI GATC 1 cut(s) 336
BstMBI GATC 1 cut(s) 333
BstMWI GCNNNNNNNGC 3 cut(s) 152, 445, 454
BstNI CCWGG 2 cut(s) 73, 315
BstNSI RCATGY 2 cut(s) 272, 600
BstSCI CCNGG 2 cut(s) 71, 313
BstSFI CTRYAG 2 cut(s) 181, 260
BstV1I GCAGC 7 cut(s) 32, 167, 252, 457, 469, 472, 551
BstV2I GAAGAC 1 cut(s) 681
BsuI GTATCC 1 cut(s) 556
BsuRI GGCC 4 cut(s) 211, 491, 529, 696
BtgI CCRYGG 1 cut(s) 718
BtsCI GGATG 4 cut(s) 18, 505, 697, 715
BtsIMutI CAGTG 1 cut(s) 676
Cac8I GCNNGC 3 cut(s) 153, 270, 311
CciI TCATGA 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 68
Csp6I GTAC 3 cut(s) 573, 600, 762
CviAII CATG 9 cut(s) 119, 242, 269, 475, 487, 559, 597, 650, 719
CviQI GTAC 3 cut(s) 573, 600, 762
DdeI CTNAG 4 cut(s) 81, 188, 393, 603
DpnI GATC 1 cut(s) 335
DpnII GATC 1 cut(s) 333
EaeI YGGCCR 1 cut(s) 527
Eam1104I CTCTTC 2 cut(s) 45, 240
EarI CTCTTC 2 cut(s) 45, 240
Eco130I CCWWGG 2 cut(s) 544, 718
Eco47I GGWCC 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 720
EcoO109I RGGNCCY 1 cut(s) 68
EcoRII CCWGG 2 cut(s) 71, 313
EcoT14I CCWWGG 2 cut(s) 544, 718
ErhI CCWWGG 2 cut(s) 544, 718
FaeI CATG 9 cut(s) 122, 245, 272, 478, 490, 562, 600, 653, 722
FaqI GGGAC 2 cut(s) 54, 240
FatI CATG 9 cut(s) 118, 241, 268, 474, 486, 558, 596, 649, 718
FauNDI CATATG 1 cut(s) 27
Fnu4HI GCNGC 9 cut(s) 21, 181, 266, 422, 446, 458, 461, 530, 540
FokI GGATG 4 cut(s) 25, 512, 704, 722
Fsp4HI GCNGC 9 cut(s) 21, 181, 266, 422, 446, 458, 461, 530, 540
FspBI CTAG 4 cut(s) 147, 273, 570, 759
GluI GCNGC 9 cut(s) 21, 181, 266, 422, 446, 458, 461, 530, 540
GsuI CTGGAG 1 cut(s) 367
HaeIII GGCC 4 cut(s) 211, 491, 529, 696
Hin1II CATG 9 cut(s) 122, 245, 272, 478, 490, 562, 600, 653, 722
HincII GTYRAC 1 cut(s) 294
HindII GTYRAC 1 cut(s) 294
HindIII AAGCTT 2 cut(s) 307, 660
HinfI GANTC 1 cut(s) 483
HphI GGTGA 4 cut(s) 134, 208, 425, 721
Hpy166II GTNNAC 2 cut(s) 199, 294
Hpy188I TCNGA 3 cut(s) 82, 385, 394
Hpy188III TCNNGA 5 cut(s) 242, 337, 361, 554, 792
Hpy8I GTNNAC 2 cut(s) 199, 294
Hpy99I CGWCG 1 cut(s) 526
HpyAV CCTTC 3 cut(s) 119, 390, 391
HpyCH4III ACNGT 2 cut(s) 429, 680
HpyCH4V TGCA 6 cut(s) 155, 183, 268, 302, 581, 746
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 445, 454
HpyF3I CTNAG 4 cut(s) 81, 188, 393, 603
Hsp92II CATG 9 cut(s) 122, 245, 272, 478, 490, 562, 600, 653, 722
KflI GGGWCCC 1 cut(s) 68
Kzo9I GATC 1 cut(s) 333
LmnI GCTCC 1 cut(s) 607
Lsp1109I GCAGC 7 cut(s) 32, 167, 252, 457, 469, 472, 551
LweI GCATC 2 cut(s) 376, 472
MaeI CTAG 4 cut(s) 147, 273, 570, 759
MalI GATC 1 cut(s) 335
MboI GATC 1 cut(s) 333
MboII GAAGA 8 cut(s) 59, 62, 98, 141, 257, 610, 657, 686
MluCI AATT 2 cut(s) 255, 724
MmeI TCCRAC 1 cut(s) 38
MseI TTAA 1 cut(s) 219
MspA1I CMGCKG 1 cut(s) 265
MspCI CTTAAG 1 cut(s) 218
MspR9I CCNGG 2 cut(s) 73, 315
Mva1269I GAATGC 1 cut(s) 581
MvaI CCWGG 2 cut(s) 73, 315
MwoI GCNNNNNNNGC 3 cut(s) 152, 445, 454
NcoI CCATGG 1 cut(s) 718
NdeI CATATG 1 cut(s) 27
NdeII GATC 1 cut(s) 333
NlaIII CATG 9 cut(s) 122, 245, 272, 478, 490, 562, 600, 653, 722
NlaIV GGNNCC 3 cut(s) 69, 70, 783
NspI RCATGY 2 cut(s) 272, 600
PaeI GCATGC 1 cut(s) 272
PagI TCATGA 1 cut(s) 241
PciI ACATGT 1 cut(s) 596
PctI GAATGC 1 cut(s) 581
PfeI GAWTC 1 cut(s) 483
PkrI GCNGC 9 cut(s) 22, 182, 267, 423, 447, 459, 462, 531, 541
PpuMI RGGWCCY 1 cut(s) 68
PscI ACATGT 1 cut(s) 596
Psp5II RGGWCCY 1 cut(s) 68
Psp6I CCWGG 2 cut(s) 71, 313
PspGI CCWGG 2 cut(s) 71, 313
PspN4I GGNNCC 3 cut(s) 69, 70, 783
PspPI GGNCC 1 cut(s) 68
PspPPI RGGWCCY 1 cut(s) 68
PstI CTGCAG 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 265
RsaI GTAC 3 cut(s) 574, 601, 763
RsaNI GTAC 3 cut(s) 573, 600, 762
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 9 cut(s) 21, 181, 266, 422, 446, 458, 461, 530, 540
Sau3AI GATC 1 cut(s) 333
Sau96I GGNCC 1 cut(s) 68
ScaI AGTACT 2 cut(s) 574, 763
ScrFI CCNGG 2 cut(s) 73, 315
SfaNI GCATC 2 cut(s) 376, 472
SfcI CTRYAG 2 cut(s) 181, 260
SinI GGWCC 1 cut(s) 68
SmlI CTYRAG 3 cut(s) 205, 218, 534
SmoI CTYRAG 3 cut(s) 205, 218, 534
SpeI ACTAGT 1 cut(s) 569
SphI GCATGC 1 cut(s) 272
Sse9I AATT 2 cut(s) 255, 724
SsiI CCGC 2 cut(s) 421, 530
SspMI CTAG 4 cut(s) 147, 273, 570, 759
StyD4I CCNGG 2 cut(s) 71, 313
StyI CCWWGG 2 cut(s) 544, 718
TaaI ACNGT 2 cut(s) 429, 680
TasI AATT 2 cut(s) 255, 724
TatI WGTACW 3 cut(s) 572, 599, 761
TauI GCSGC 2 cut(s) 424, 532
TfiI GAWTC 1 cut(s) 483
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 1 cut(s) 676
TseI GCWGC 7 cut(s) 20, 180, 265, 445, 457, 460, 539
TspDTI ATGAA 4 cut(s) 107, 258, 491, 516
TspRI CASTG 1 cut(s) 676
Vha464I CTTAAG 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 68
XceI RCATGY 2 cut(s) 272, 600
XspI CTAG 4 cut(s) 147, 273, 570, 759
ZrmI AGTACT 2 cut(s) 574, 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.