MD16G1229800.v1.1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0009928
Physical Location & Seq
Forward (+)
23435329 .. 23435975
647 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1229800.v1.1.491

Sequence Viewer

Length: 354 bp
ATGTATTTGGGGATGATGGCAGGAGGGCAACATAGGGGTTGGGGAATGATAAACGATGAGGGTTGGAGAAAGGGACCTTGGACTGCTGAGGAAGATGGATTTCTCATTGAGTATGTGAGGTTTCATGGTGAAGGCAGATGGAACTCTGTGGCTAGGCTTGCAGGGTTGAAAAGGAATGGAAAGAGCTGCAGATTGAGGTGGGTGAACTATTTGAGGCCAGAACATAAGAGGGGGCAGATAACTCCTCATGAAGAGAGCCTCATTCTAGATCTACATGCTAGATGGGGAAACAGGTGGTCGATGATTGCACGAAGTTTGCCTGGAAGGACTGACAAGACAATCAAGAACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

118

Amino Acids

13.72

Weight (kDa)

10.15

Isoelectric Point (pI)

60.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 24 - 71 4.9e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 27 - 85 1.8e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 77 - 117 3.4e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 169
AjnI CCWGG 1 cut(s) 319
AjuI GAANNNNNNNTTGG 2 cut(s) 61, 93
AluBI AGCT 1 cut(s) 186
AluI AGCT 1 cut(s) 186
AoxI GGCC 1 cut(s) 215
ApeKI GCWGC 1 cut(s) 186
AspS9I GGNCC 1 cut(s) 74
AsuHPI GGTGA 2 cut(s) 140, 214
AvaII GGWCC 1 cut(s) 74
BbvCI CCTCAGC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 173
BccI CCATC 4 cut(s) 10, 89, 132, 276
BciT130I CCWGG 1 cut(s) 321
BfaI CTAG 3 cut(s) 153, 266, 279
BfmI CTRYAG 1 cut(s) 187
BglII AGATCT 1 cut(s) 268
BisI GCNGC 1 cut(s) 187
BlsI GCNGC 1 cut(s) 188
Bme1390I CCNGG 1 cut(s) 321
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 321
Bpu10I CCTNAGC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 77
BseGI GGATG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 234
BseXI GCAGC 1 cut(s) 173
BshFI GGCC 1 cut(s) 217
BslFI GGGAC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 87
BsnI GGCC 1 cut(s) 217
Bsp143I GATC 1 cut(s) 268
BspANI GGCC 1 cut(s) 217
BspCNI CTCAG 1 cut(s) 79
BspHI TCATGA 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 75
BspMAI CTGCAG 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 77
BssMI GATC 1 cut(s) 268
BssT1I CCWWGG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 321
Bst6I CTCTTC 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 18
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 1 cut(s) 321
BstNSI RCATGY 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 319
BstSFI CTRYAG 1 cut(s) 187
BstV1I GCAGC 1 cut(s) 173
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BsuRI GGCC 1 cut(s) 217
BtsCI GGATG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 159
CciI TCATGA 1 cut(s) 247
Cfr13I GGNCC 1 cut(s) 74
CviAII CATG 3 cut(s) 125, 248, 275
CviJI RGCY 5 cut(s) 152, 157, 186, 217, 258
CviKI_1 RGCY 5 cut(s) 152, 157, 186, 217, 258
DdeI CTNAG 1 cut(s) 87
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
Eco130I CCWWGG 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 74
EcoO109I RGGNCCY 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 77
FaeI CATG 3 cut(s) 128, 251, 278
FaiI YATR 6 cut(s) 33, 114, 126, 225, 249, 276
FaqI GGGAC 1 cut(s) 87
FatI CATG 3 cut(s) 124, 247, 274
Fnu4HI GCNGC 1 cut(s) 187
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 187
FspBI CTAG 3 cut(s) 153, 266, 279
GluI GCNGC 1 cut(s) 187
HaeIII GGCC 1 cut(s) 217
Hin1II CATG 3 cut(s) 128, 251, 278
HphI GGTGA 2 cut(s) 140, 214
Hpy166II GTNNAC 1 cut(s) 205
Hpy188III TCNNGA 3 cut(s) 248, 266, 343
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 2 cut(s) 125, 318
HpyCH4V TGCA 3 cut(s) 161, 189, 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 1 cut(s) 87
Hsp92II CATG 3 cut(s) 128, 251, 278
Kzo9I GATC 1 cut(s) 268
LpnPI CCDG 6 cut(s) 6, 147, 231, 277, 306, 333
Lsp1109I GCAGC 1 cut(s) 173
MaeI CTAG 3 cut(s) 153, 266, 279
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 2 cut(s) 104, 263
MflI RGATCY 1 cut(s) 268
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 9 cut(s) 17, 52, 82, 111, 189, 207, 222, 255, 269
MspR9I CCNGG 1 cut(s) 321
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 1 cut(s) 268
NlaIII CATG 3 cut(s) 128, 251, 278
NlaIV GGNNCC 1 cut(s) 75
NspI RCATGY 1 cut(s) 278
PagI TCATGA 1 cut(s) 247
PkrI GCNGC 1 cut(s) 188
PpuMI RGGWCCY 1 cut(s) 74
Psp5II RGGWCCY 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 1 cut(s) 74
PspPPI RGGWCCY 1 cut(s) 74
PstI CTGCAG 1 cut(s) 191
PsuI RGATCY 1 cut(s) 268
SatI GCNGC 1 cut(s) 187
Sau3AI GATC 1 cut(s) 268
Sau96I GGNCC 1 cut(s) 74
ScrFI CCNGG 1 cut(s) 321
SetI ASST 5 cut(s) 79, 122, 188, 200, 296
SfcI CTRYAG 1 cut(s) 187
SinI GGWCC 1 cut(s) 74
SspMI CTAG 3 cut(s) 153, 266, 279
StyD4I CCNGG 1 cut(s) 319
StyI CCWWGG 1 cut(s) 77
TaqI TCGA 1 cut(s) 299
TseI GCWGC 1 cut(s) 186
TspDTI ATGAA 2 cut(s) 113, 264
VpaK11BI GGWCC 1 cut(s) 74
XbaI TCTAGA 1 cut(s) 265
XceI RCATGY 1 cut(s) 278
XspI CTAG 3 cut(s) 153, 266, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.