pycom16g19130
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0009928
Physical Location & Seq
Forward (+)
16087735 .. 16088660
926 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g19130.3

Sequence Viewer

Length: 720 bp
ATGTATTTGGGGATGATGGCAGGAGGACATCATAGGGGTTGGGGGATGATAGAAGATGAGGCTTGGAGAAAGGGACCTTGGACTGCTGAGGAAGATGGATTGCTCATTGAGCATGTGAGGCTTCATGGTGAAGGCAGATGGAACTCTGTGGCTAGGCTTGCAGGGCTGAAAAGGAATGGAAAGAGCTGCAGATTGAGGTGGGTGAACTATTTGAGGCCAGAACTTAAGAGGGGGCACATAACTCCTCATGAAGAGAGCATCATTCTAGACCTACATGCTAGATGGGGAAACAGGTGGTCGACAATTGCACGAAGTTTGCCTGGAAGGACTGACAATGAGATCAAGAACTACTGGAGGACTCATTTCAAGAAAAAGGCGAAAGCACCTTCTGATGCCTCCGAAAGGGCCAAAACCCGCCTCTTAAGGAGACATAAACCCCATAATCAGCAGCAACAACAACAAAATTTGCAAGTAGATCAAGAAGTGAAAAGAATCGTGTCCTTATTGGACGAAAATGAGACTAAATTGCCGTTATATTGGCCTCACGCAGCTGATCATCATCAGGAGCAAGGCTTCTTCTATTCCATGCTCGATGGCAATATTGTCAATGTGTCTATGCCTGAAGCTGCCTCCAGCAATGAGGTCAATTTTCTGTGGGATGGTTTGTGGAACTTAAATGATGTCCATTCAAACTTTATTAACACCACCAGACAAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

240

Amino Acids

27.95

Weight (kDa)

9.48

Isoelectric Point (pI)

61.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 299
AciI CCGC 1 cut(s) 415
AcsI RAATTY 1 cut(s) 463
AcuI CTGAAG 1 cut(s) 642
AfiI CCNNNNNNNGG 1 cut(s) 402
AflII CTTAAG 2 cut(s) 224, 421
AgsI TTSAA 2 cut(s) 367, 690
AjnI CCWGG 1 cut(s) 319
AjuI GAANNNNNNNTTGG 2 cut(s) 61, 93
AluBI AGCT 4 cut(s) 186, 551, 626, 717
AluI AGCT 4 cut(s) 186, 551, 626, 717
Alw26I GTCTC 2 cut(s) 421, 512
AoxI GGCC 3 cut(s) 215, 405, 539
ApeKI GCWGC 4 cut(s) 186, 448, 548, 626
ApoI RAATTY 1 cut(s) 463
AspS9I GGNCC 2 cut(s) 74, 405
AsuHPI GGTGA 2 cut(s) 140, 214
AvaII GGWCC 1 cut(s) 74
BaeGI GKGCMC 1 cut(s) 237
BbvCI CCTCAGC 1 cut(s) 87
BbvI GCAGC 4 cut(s) 173, 460, 560, 613
BccI CCATC 6 cut(s) 10, 89, 132, 276, 587, 653
BceAI ACGGC 1 cut(s) 514
BciT130I CCWGG 1 cut(s) 321
BclI TGATCA 1 cut(s) 553
BcoDI GTCTC 2 cut(s) 421, 512
BfaI CTAG 4 cut(s) 153, 266, 279, 718
BfmI CTRYAG 1 cut(s) 187
BfrI CTTAAG 2 cut(s) 224, 421
BisI GCNGC 4 cut(s) 187, 449, 549, 627
BlsI GCNGC 4 cut(s) 188, 450, 550, 628
Bme1390I CCNGG 1 cut(s) 321
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 2 cut(s) 74, 405
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 321
BmsI GCATC 2 cut(s) 267, 382
BpmI CTGGAG 2 cut(s) 373, 616
Bpu10I CCTNAGC 1 cut(s) 87
BsaBI GATNNNNATC 1 cut(s) 558
BsaJI CCNNGG 1 cut(s) 77
Bsc4I CCNNNNNNNGG 1 cut(s) 402
Bse1I ACTGG 1 cut(s) 356
Bse3DI GCAATG 1 cut(s) 643
Bse8I GATNNNNATC 1 cut(s) 558
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 77
BseGI GGATG 3 cut(s) 18, 51, 664
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 1 cut(s) 402
BseMI GCAATG 1 cut(s) 643
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 356
BseRI GAGGAG 1 cut(s) 234
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 4 cut(s) 173, 460, 560, 613
BshFI GGCC 3 cut(s) 217, 407, 541
BslFI GGGAC 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 402
BsmAI GTCTC 2 cut(s) 421, 512
BsmFI GGGAC 1 cut(s) 87
BsnI GGCC 3 cut(s) 217, 407, 541
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 3 cut(s) 339, 475, 553
BspACI CCGC 1 cut(s) 415
BspANI GGCC 3 cut(s) 217, 407, 541
BspCNI CTCAG 1 cut(s) 79
BspHI TCATGA 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 75
BspMAI CTGCAG 1 cut(s) 191
BspTI CTTAAG 2 cut(s) 224, 421
BsrDI GCAATG 1 cut(s) 643
BsrI ACTGG 1 cut(s) 356
BssECI CCNNGG 1 cut(s) 77
BssMI GATC 3 cut(s) 339, 475, 553
BssT1I CCWWGG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 321
Bst6I CTCTTC 1 cut(s) 246
BstAFI CTTAAG 2 cut(s) 224, 421
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 87
BstENI CCTNNNNNAGG 1 cut(s) 400
BstF5I GGATG 3 cut(s) 18, 51, 664
BstKTI GATC 3 cut(s) 342, 478, 556
BstMAI GTCTC 2 cut(s) 421, 512
BstMBI GATC 3 cut(s) 339, 475, 553
BstMWI GCNNNNNNNGC 4 cut(s) 109, 118, 158, 163
BstNI CCWGG 1 cut(s) 321
BstNSI RCATGY 2 cut(s) 116, 278
BstSCI CCNGG 1 cut(s) 319
BstSFI CTRYAG 1 cut(s) 187
BstSLI GKGCMC 1 cut(s) 237
BstV1I GCAGC 4 cut(s) 173, 460, 560, 613
BsuRI GGCC 3 cut(s) 217, 407, 541
BtsCI GGATG 3 cut(s) 18, 51, 664
Cac8I GCNNGC 1 cut(s) 159
CciI TCATGA 1 cut(s) 247
Cfr13I GGNCC 2 cut(s) 74, 405
CviAII CATG 5 cut(s) 113, 125, 248, 275, 586
DdeI CTNAG 1 cut(s) 87
DpnI GATC 3 cut(s) 341, 477, 555
DpnII GATC 3 cut(s) 339, 475, 553
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
Eco130I CCWWGG 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 74
Eco57I CTGAAG 1 cut(s) 642
EcoNI CCTNNNNNAGG 1 cut(s) 400
EcoO109I RGGNCCY 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 77
FaeI CATG 5 cut(s) 116, 128, 251, 278, 589
FaqI GGGAC 1 cut(s) 87
FatI CATG 5 cut(s) 112, 124, 247, 274, 585
FauI CCCGC 1 cut(s) 422
FbaI TGATCA 1 cut(s) 553
FblI GTMKAC 1 cut(s) 299
Fnu4HI GCNGC 4 cut(s) 187, 449, 549, 627
FokI GGATG 3 cut(s) 25, 58, 671
Fsp4HI GCNGC 4 cut(s) 187, 449, 549, 627
FspBI CTAG 4 cut(s) 153, 266, 279, 718
GluI GCNGC 4 cut(s) 187, 449, 549, 627
GsuI CTGGAG 2 cut(s) 373, 616
HaeIII GGCC 3 cut(s) 217, 407, 541
Hin1II CATG 5 cut(s) 116, 128, 251, 278, 589
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HinfI GANTC 2 cut(s) 358, 492
HphI GGTGA 2 cut(s) 140, 214
Hpy166II GTNNAC 2 cut(s) 205, 300
Hpy188I TCNGA 2 cut(s) 391, 400
Hpy188III TCNNGA 6 cut(s) 248, 266, 343, 367, 479, 563
Hpy8I GTNNAC 2 cut(s) 205, 300
HpyAV CCTTC 3 cut(s) 125, 318, 396
HpyCH4V TGCA 4 cut(s) 161, 189, 308, 469
HpyF10VI GCNNNNNNNGC 4 cut(s) 109, 118, 158, 163
HpyF3I CTNAG 1 cut(s) 87
Hsp92II CATG 5 cut(s) 116, 128, 251, 278, 589
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 3 cut(s) 339, 475, 553
LmnI GCTCC 1 cut(s) 565
Lsp1109I GCAGC 4 cut(s) 173, 460, 560, 613
LweI GCATC 2 cut(s) 267, 382
MaeI CTAG 4 cut(s) 153, 266, 279, 718
MalI GATC 3 cut(s) 341, 477, 555
MboI GATC 3 cut(s) 339, 475, 553
MboII GAAGA 4 cut(s) 65, 104, 263, 568
MfeI CAATTG 1 cut(s) 303
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 4 cut(s) 303, 463, 524, 646
MlyI GAGTC 1 cut(s) 352
MseI TTAA 4 cut(s) 225, 422, 674, 699
MspA1I CMGCKG 1 cut(s) 551
MspCI CTTAAG 2 cut(s) 224, 421
MspR9I CCNGG 1 cut(s) 321
MunI CAATTG 1 cut(s) 303
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 4 cut(s) 109, 118, 158, 163
NdeII GATC 3 cut(s) 339, 475, 553
NlaIII CATG 5 cut(s) 116, 128, 251, 278, 589
NlaIV GGNNCC 1 cut(s) 75
NspI RCATGY 2 cut(s) 116, 278
PagI TCATGA 1 cut(s) 247
PfeI GAWTC 1 cut(s) 492
PkrI GCNGC 4 cut(s) 188, 450, 550, 628
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
PpuMI RGGWCCY 1 cut(s) 74
Psp5II RGGWCCY 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 2 cut(s) 74, 405
PspPPI RGGWCCY 1 cut(s) 74
PstI CTGCAG 1 cut(s) 191
PvuII CAGCTG 1 cut(s) 551
SalI GTCGAC 1 cut(s) 298
SaqAI TTAA 4 cut(s) 225, 422, 674, 699
SatI GCNGC 4 cut(s) 187, 449, 549, 627
Sau3AI GATC 3 cut(s) 339, 475, 553
Sau96I GGNCC 2 cut(s) 74, 405
SchI GAGTC 1 cut(s) 352
ScrFI CCNGG 1 cut(s) 321
SduI GDGCHC 1 cut(s) 237
SfaNI GCATC 2 cut(s) 267, 382
SfcI CTRYAG 1 cut(s) 187
SinI GGWCC 1 cut(s) 74
SmlI CTYRAG 2 cut(s) 224, 421
SmoI CTYRAG 2 cut(s) 224, 421
Sse9I AATT 4 cut(s) 303, 463, 524, 646
SsiI CCGC 1 cut(s) 415
SspI AATATT 1 cut(s) 601
SspMI CTAG 4 cut(s) 153, 266, 279, 718
StyD4I CCNGG 1 cut(s) 319
StyI CCWWGG 1 cut(s) 77
TaqI TCGA 2 cut(s) 299, 591
TasI AATT 4 cut(s) 303, 463, 524, 646
TfiI GAWTC 1 cut(s) 492
Tru1I TTAA 4 cut(s) 225, 422, 674, 699
Tru9I TTAA 4 cut(s) 225, 422, 674, 699
TseI GCWGC 4 cut(s) 186, 448, 548, 626
TspDTI ATGAA 2 cut(s) 113, 264
Vha464I CTTAAG 2 cut(s) 224, 421
VpaK11BI GGWCC 1 cut(s) 74
XagI CCTNNNNNAGG 1 cut(s) 400
XapI RAATTY 1 cut(s) 463
XbaI TCTAGA 1 cut(s) 265
XceI RCATGY 2 cut(s) 116, 278
XmiI GTMKAC 1 cut(s) 299
XspI CTAG 4 cut(s) 153, 266, 279, 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.