MD16G1229600.v1.1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0009928
Physical Location & Seq
Forward (+)
23422966 .. 23423984
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1229600.v1.1.491

Sequence Viewer

Length: 792 bp
ATGTATTTGGGGATGATGGCAGGTCAACATATGGGTTGGGGTTTAATAGAAGAGGAGGGTTGGAGAAAGGGTCCTTGGACTGCTGAGGAAGATAGGTTGCTTATTGAGTATGTGAGGGTTCATGGTGAAGGCAGATGGAACTCTGTGGCCAGACTTGCAGGACTGAAGAGGAATGGAAAGAGCTGCAGACTGAGGTGGGTAAATTATTTGAGGCCAGACCTTAAGAGGGGGCAAATTACTCCACATGAAGAGAGAATAATAGTAGACCTACATGCAAGATGGGGGAATAGATGGTCAACCATTGCAAGGAGTTTGCCTGGAAGGACTGATAATGAGATCAAGAACTATTGGAGGACCCATTTTAAGAAAAAAGCAGCCAAAGCGGCTTCTGATGCCTCCGAGAAGGTGAAAACTCGCCTTTTAAGGAGGCAACAGTTTTACCAGCAGCAGCAGCATCAGCAACTCAATCAAGCAGATCTGAAGAAAATCATGGCCTTACTGGATGAAAATGACAACAATAAAATACCATCCTGCTGGCCTCAAGTGAAGCCGGATTCGGAGACTTCTACTACTACTGTATGCCCTCACACAGCTGATCAGGAGCAAGGATTCTTCAGCTCCATGCTACATGGCAATGTGTATGTGCCTGAACCTGCCTCCACTAATGAGGAAAATTTTCTGTGGGATGGTTTGTGGAACTTGGATGATATCCATGGTAATTTTAACCCAACTTCAGCTTGTGCAACAGGAAAAACTAGTTTGCACAGCAACCTGGTGGTTCCCTTCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

264

Amino Acids

30.34

Weight (kDa)

8.93

Isoelectric Point (pI)

52.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 23 - 70 5.6e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 26 - 84 3.3e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 76 - 120 6.7e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 80 - 131 9.3e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 11, 661
AccI GTMKAC 1 cut(s) 264
AciI CCGC 1 cut(s) 383
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 1 cut(s) 673
AcuI CTGAAG 4 cut(s) 185, 500, 598, 717
AfiI CCNNNNNNNGG 2 cut(s) 226, 306
AflII CTTAAG 1 cut(s) 221
AhlI ACTAGT 1 cut(s) 755
AjnI CCWGG 2 cut(s) 316, 771
AjuI GAANNNNNNNTTGG 2 cut(s) 58, 90
AluBI AGCT 4 cut(s) 183, 593, 618, 737
AluI AGCT 4 cut(s) 183, 593, 618, 737
Alw26I GTCTC 1 cut(s) 554
AoxI GGCC 4 cut(s) 147, 212, 492, 536
ApeKI GCWGC 5 cut(s) 183, 374, 445, 448, 451
ApoI RAATTY 1 cut(s) 673
Asp700I GAANNNNTTC 1 cut(s) 675
AspS9I GGNCC 2 cut(s) 71, 354
AsuHPI GGTGA 2 cut(s) 137, 418
AvaII GGWCC 2 cut(s) 71, 354
BalI TGGCCA 1 cut(s) 149
BbvCI CCTCAGC 1 cut(s) 84
BbvI GCAGC 5 cut(s) 170, 386, 457, 460, 463
BccI CCATC 6 cut(s) 10, 129, 273, 285, 535, 680
BciT130I CCWGG 2 cut(s) 318, 773
BclI TGATCA 1 cut(s) 595
BcoDI GTCTC 1 cut(s) 554
BcuI ACTAGT 1 cut(s) 755
BfaI CTAG 1 cut(s) 756
BfmI CTRYAG 1 cut(s) 184
BfrI CTTAAG 1 cut(s) 221
BfuAI ACCTGC 2 cut(s) 11, 661
BglI GCCNNNNNGGC 1 cut(s) 383
BglII AGATCT 1 cut(s) 475
BisI GCNGC 6 cut(s) 184, 375, 384, 446, 449, 452
BlsI GCNGC 6 cut(s) 185, 376, 385, 447, 450, 453
Bme1390I CCNGG 2 cut(s) 318, 773
Bme18I GGWCC 2 cut(s) 71, 354
BmgT120I GGNCC 2 cut(s) 71, 354
BmiI GGNNCC 3 cut(s) 72, 356, 780
BmrFI CCNGG 2 cut(s) 318, 773
BmsI GCATC 2 cut(s) 382, 463
Bpu10I CCTNAGC 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 525
BsaJI CCNNGG 2 cut(s) 74, 712
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 306
Bse1I ACTGG 1 cut(s) 504
Bse3DI GCAATG 2 cut(s) 300, 640
BseBI CCWGG 2 cut(s) 318, 773
BseDI CCNNGG 2 cut(s) 74, 712
BseGI GGATG 5 cut(s) 18, 508, 527, 691, 709
BseLI CCNNNNNNNGG 2 cut(s) 226, 306
BseMI GCAATG 2 cut(s) 300, 640
BseMII CTCAG 2 cut(s) 75, 182
BseNI ACTGG 1 cut(s) 504
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 5 cut(s) 170, 386, 457, 460, 463
BshFI GGCC 4 cut(s) 149, 214, 494, 538
BsiSI CCGG 1 cut(s) 551
BslI CCNNNNNNNGG 2 cut(s) 226, 306
BsmAI GTCTC 1 cut(s) 554
BsnI GGCC 4 cut(s) 149, 214, 494, 538
Bsp143I GATC 3 cut(s) 336, 475, 595
Bsp19I CCATGG 1 cut(s) 712
BspACI CCGC 1 cut(s) 383
BspANI GGCC 4 cut(s) 149, 214, 494, 538
BspCNI CTCAG 2 cut(s) 76, 183
BspLI GGNNCC 3 cut(s) 72, 356, 780
BspMAI CTGCAG 1 cut(s) 188
BspMI ACCTGC 2 cut(s) 11, 661
BspTI CTTAAG 1 cut(s) 221
BsrDI GCAATG 2 cut(s) 300, 640
BsrI ACTGG 1 cut(s) 504
BssECI CCNNGG 2 cut(s) 74, 712
BssMI GATC 3 cut(s) 336, 475, 595
BssT1I CCWWGG 2 cut(s) 74, 712
Bst2UI CCWGG 2 cut(s) 318, 773
Bst4CI ACNGT 2 cut(s) 435, 577
Bst6I CTCTTC 3 cut(s) 45, 161, 243
BstAFI CTTAAG 1 cut(s) 221
BstC8I GCNNGC 1 cut(s) 536
BstDEI CTNAG 2 cut(s) 84, 191
BstDSI CCRYGG 1 cut(s) 712
BstF5I GGATG 5 cut(s) 18, 508, 527, 691, 709
BstKTI GATC 3 cut(s) 339, 478, 598
BstMAI GTCTC 1 cut(s) 554
BstMBI GATC 3 cut(s) 336, 475, 595
BstMWI GCNNNNNNNGC 6 cut(s) 155, 380, 383, 392, 451, 457
BstNI CCWGG 2 cut(s) 318, 773
BstNSI RCATGY 1 cut(s) 275
BstSCI CCNGG 2 cut(s) 316, 771
BstSFI CTRYAG 1 cut(s) 184
BstV1I GCAGC 5 cut(s) 170, 386, 457, 460, 463
BstX2I RGATCY 1 cut(s) 475
BstXI CCANNNNNNTGG 1 cut(s) 534
BstYI RGATCY 1 cut(s) 475
BsuRI GGCC 4 cut(s) 149, 214, 494, 538
BtgI CCRYGG 1 cut(s) 712
BtsCI GGATG 5 cut(s) 18, 508, 527, 691, 709
BveI ACCTGC 2 cut(s) 11, 661
Cac8I GCNNGC 1 cut(s) 536
Cfr13I GGNCC 2 cut(s) 71, 354
CsiI ACCWGGT 1 cut(s) 771
CviAII CATG 7 cut(s) 122, 245, 272, 490, 622, 629, 713
DdeI CTNAG 2 cut(s) 84, 191
DpnI GATC 3 cut(s) 338, 477, 597
DpnII GATC 3 cut(s) 336, 475, 595
EaeI YGGCCR 1 cut(s) 147
Eam1104I CTCTTC 3 cut(s) 45, 161, 243
EarI CTCTTC 3 cut(s) 45, 161, 243
Eco130I CCWWGG 2 cut(s) 74, 712
Eco32I GATATC 1 cut(s) 709
Eco47I GGWCC 2 cut(s) 71, 354
Eco57I CTGAAG 4 cut(s) 185, 500, 598, 717
EcoO109I RGGNCCY 2 cut(s) 71, 354
EcoRII CCWGG 2 cut(s) 316, 771
EcoRV GATATC 1 cut(s) 709
EcoT14I CCWWGG 2 cut(s) 74, 712
ErhI CCWWGG 2 cut(s) 74, 712
FaeI CATG 7 cut(s) 125, 248, 275, 493, 625, 632, 716
FatI CATG 7 cut(s) 121, 244, 271, 489, 621, 628, 712
FauNDI CATATG 1 cut(s) 30
FbaI TGATCA 1 cut(s) 595
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 6 cut(s) 184, 375, 384, 446, 449, 452
FokI GGATG 5 cut(s) 25, 514, 515, 698, 716
Fsp4HI GCNGC 6 cut(s) 184, 375, 384, 446, 449, 452
FspBI CTAG 1 cut(s) 756
GluI GCNGC 6 cut(s) 184, 375, 384, 446, 449, 452
HaeIII GGCC 4 cut(s) 149, 214, 494, 538
HapII CCGG 1 cut(s) 551
Hin1II CATG 7 cut(s) 125, 248, 275, 493, 625, 632, 716
HincII GTYRAC 2 cut(s) 26, 297
HindII GTYRAC 2 cut(s) 26, 297
HinfI GANTC 2 cut(s) 554, 609
HpaII CCGG 1 cut(s) 551
HphI GGTGA 2 cut(s) 137, 418
Hpy166II GTNNAC 3 cut(s) 26, 265, 297
Hpy188I TCNGA 4 cut(s) 391, 400, 480, 559
Hpy188III TCNNGA 2 cut(s) 340, 599
Hpy8I GTNNAC 3 cut(s) 26, 265, 297
HpyAV CCTTC 3 cut(s) 122, 315, 397
HpyCH4III ACNGT 2 cut(s) 435, 577
HpyCH4V TGCA 6 cut(s) 158, 186, 275, 305, 743, 763
HpyF10VI GCNNNNNNNGC 6 cut(s) 155, 380, 383, 392, 451, 457
HpyF3I CTNAG 2 cut(s) 84, 191
Hsp92II CATG 7 cut(s) 125, 248, 275, 493, 625, 632, 716
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 3 cut(s) 336, 475, 595
LmnI GCTCC 2 cut(s) 601, 623
Lsp1109I GCAGC 5 cut(s) 170, 386, 457, 460, 463
LweI GCATC 2 cut(s) 382, 463
MabI ACCWGGT 1 cut(s) 771
MaeI CTAG 1 cut(s) 756
MalI GATC 3 cut(s) 338, 477, 597
MboI GATC 3 cut(s) 336, 475, 595
MboII GAAGA 6 cut(s) 62, 101, 178, 260, 493, 604
MflI RGATCY 1 cut(s) 475
MlsI TGGCCA 1 cut(s) 149
MluCI AATT 4 cut(s) 202, 234, 673, 718
MluNI TGGCCA 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 41
Mox20I TGGCCA 1 cut(s) 149
MroXI GAANNNNTTC 1 cut(s) 675
MscI TGGCCA 1 cut(s) 149
MseI TTAA 5 cut(s) 44, 222, 363, 422, 723
MslI CAYNNNNRTG 1 cut(s) 633
Msp20I TGGCCA 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 593
MspCI CTTAAG 1 cut(s) 221
MspI CCGG 1 cut(s) 551
MspR9I CCNGG 2 cut(s) 318, 773
MvaI CCWGG 2 cut(s) 318, 773
MwoI GCNNNNNNNGC 6 cut(s) 155, 380, 383, 392, 451, 457
NcoI CCATGG 1 cut(s) 712
NdeI CATATG 1 cut(s) 30
NdeII GATC 3 cut(s) 336, 475, 595
NlaIII CATG 7 cut(s) 125, 248, 275, 493, 625, 632, 716
NlaIV GGNNCC 3 cut(s) 72, 356, 780
NspI RCATGY 1 cut(s) 275
PdmI GAANNNNTTC 1 cut(s) 675
PfeI GAWTC 2 cut(s) 554, 609
PkrI GCNGC 6 cut(s) 185, 376, 385, 447, 450, 453
PpuMI RGGWCCY 2 cut(s) 71, 354
Psp5II RGGWCCY 2 cut(s) 71, 354
Psp6I CCWGG 2 cut(s) 316, 771
PspGI CCWGG 2 cut(s) 316, 771
PspN4I GGNNCC 3 cut(s) 72, 356, 780
PspPI GGNCC 2 cut(s) 71, 354
PspPPI RGGWCCY 2 cut(s) 71, 354
PstI CTGCAG 1 cut(s) 188
PsuI RGATCY 1 cut(s) 475
PvuII CAGCTG 1 cut(s) 593
RseI CAYNNNNRTG 1 cut(s) 633
SaqAI TTAA 5 cut(s) 44, 222, 363, 422, 723
SatI GCNGC 6 cut(s) 184, 375, 384, 446, 449, 452
Sau3AI GATC 3 cut(s) 336, 475, 595
Sau96I GGNCC 2 cut(s) 71, 354
ScrFI CCNGG 2 cut(s) 318, 773
SexAI ACCWGGT 1 cut(s) 771
SfaNI GCATC 2 cut(s) 382, 463
SfcI CTRYAG 1 cut(s) 184
SinI GGWCC 2 cut(s) 71, 354
SmiMI CAYNNNNRTG 1 cut(s) 633
SmlI CTYRAG 2 cut(s) 221, 540
SmoI CTYRAG 2 cut(s) 221, 540
SpeI ACTAGT 1 cut(s) 755
Sse9I AATT 4 cut(s) 202, 234, 673, 718
SsiI CCGC 1 cut(s) 383
SspMI CTAG 1 cut(s) 756
StyD4I CCNGG 2 cut(s) 316, 771
StyI CCWWGG 2 cut(s) 74, 712
TaaI ACNGT 2 cut(s) 435, 577
TasI AATT 4 cut(s) 202, 234, 673, 718
TauI GCSGC 1 cut(s) 386
TfiI GAWTC 2 cut(s) 554, 609
Tru1I TTAA 5 cut(s) 44, 222, 363, 422, 723
Tru9I TTAA 5 cut(s) 44, 222, 363, 422, 723
TseI GCWGC 5 cut(s) 183, 374, 445, 448, 451
TspDTI ATGAA 3 cut(s) 110, 261, 519
Vha464I CTTAAG 1 cut(s) 221
VpaK11BI GGWCC 2 cut(s) 71, 354
XapI RAATTY 1 cut(s) 673
XceI RCATGY 1 cut(s) 275
XmiI GTMKAC 1 cut(s) 264
XmnI GAANNNNTTC 1 cut(s) 675
XspI CTAG 1 cut(s) 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.