Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010175

Physical Location & Seq

Genomic Coordinates Forward (+)

8970632 .. 8972464

Gene Structure 1833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G24590.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGATGGTGATGATATCTCTTCACTTCTCTACTCCGCCGCTAGCTTTTCTCAAATCTGATTCCAATTCCAGATTTCTCAAGAACCCTAATCCTAATTTTATCCAATTCACCCCAAAATCCCAACTTCTTTTCCCCCAACGTCTCAATTTCAACACCGGAACAAATTTAAACCGGCGAACTCTGAGTTGCTATGGGATTAAGGATTCAAGTGAGACAACGAAGTCTGCGCCGTCATTAGACTCCGGCGACGGTGGCGGCGGAGATGGTGGTGATGATGATAAAGGTGAAGTGGAGGAAAAAAACAGACTTTTTCCGGAATGGTTGGATTTTACCTCGGATGATGCACAGACTGTGTTTGTGGCTATAGCTGTATCGTTGGCGTTTCGTTATTTTATCGCAGAACCAAGATATATTCCTTCTTTGTCTATGTATCCTACTTTTGATGTTGGAGACAGATTAGTTGCAGAGAAGGTGAGTTATTATTTCAGGAAGCCTTGTGCAAATGATATTGTCATCTTTAAAAGTCCACCAGTTCTTCAGGAAGTTGGGTATACTGATGCCGATGTATTTATTAAACGGATTGTTGCCAAAGAAGGTGACCTTGTGGAGGTACATAATGGGAAACTGATGGTTAATGGTGTTGCTAGGAATGAAAAATTCATCTTAGAGCCTCCTGGTTATGAAATGACACCAATTAGGGTACCGGAAAATTCAGTCTTTGTGATGGGTGATAACCGGAATAACAGTTATGATTCGCACGTATGGGGTCCTCTGCCTTTGAAGAATATTATTGGACGGTCGGTTTTTCGGTATTGGCCACCAAACAGAGTAAGCGGGACAGTGCTAGAAGGTGGCTGTGCTGTGGATAAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0055035 GO:0061024 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

291

Amino Acids

32.55

Weight (kDa)

5.74

Isoelectric Point (pI)

31.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S26	PF10502	135 - 291	3.5e-42	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24590 AT3G24590
fragaria_vesca	FvH4_1g04510
malus_domestica	MD02G1044900.v1.1 MD15G1183400.v1.1
prunus_persica	Prupe.7G232700_v2.0.a1 Prupe.7G232700_v2.0.a1
pyrus_communis	pycom02g03760 pycom15g16520
rosa_chinensis	RchiOBHm_Chr2g0090191
rosa_laevigata	RLG00000016087 RLG00000016089
rosa_multiflora	Rmu_sc0007981.1_g000001 Rmu_sc0011117.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151380
rosa_rugosa	Rorug02G0005500
rosa_samantha	Rh2AG051300 Rh2BG050000 Rh2BG050100 Rh2CG052300
rosa_wichuraiana	Rw2G004530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	220
Acc65I	GGTACC	1 cut(s)	700
AccB1I	GGYRCC	1 cut(s)	700
AccI	GTMKAC	1 cut(s)	551
AccIII	TCCGGA	1 cut(s)	313
AciI	CCGC	5 cut(s)	35, 38, 255, 258, 834
AcoI	YGGCCR	1 cut(s)	815
AcsI	RAATTY	3 cut(s)	163, 656, 709
AcuI	CTGAAG	1 cut(s)	521
AfaI	GTAC	2 cut(s)	612, 702
AfiI	CCNNNNNNNGG	1 cut(s)	607
AgsI	TTSAA	3 cut(s)	151, 207, 781
AjnI	CCWGG	1 cut(s)	673
AluBI	AGCT	2 cut(s)	44, 368
AluI	AGCT	2 cut(s)	44, 368
Alw26I	GTCTC	3 cut(s)	146, 206, 444
Aor13HI	TCCGGA	1 cut(s)	313
AoxI	GGCC	1 cut(s)	815
ApoI	RAATTY	3 cut(s)	163, 656, 709
Asp718I	GGTACC	1 cut(s)	700
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	767
AsuHPI	GGTGA	7 cut(s)	19, 100, 281, 296, 484, 608, 740
AsuNHI	GCTAGC	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	767
BalI	TGGCCA	1 cut(s)	817
BanI	GGYRCC	1 cut(s)	700
BccI	CCATC	3 cut(s)	257, 622, 718
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	675
BciVI	GTATCC	1 cut(s)	441
BcoDI	GTCTC	3 cut(s)	146, 206, 444
BfaI	CTAG	3 cut(s)	41, 645, 845
BfmI	CTRYAG	1 cut(s)	363
BfuI	GTATCC	1 cut(s)	441
BisI	GCNGC	2 cut(s)	38, 256
BlsI	GCNGC	2 cut(s)	39, 257
Bme1390I	CCNGG	1 cut(s)	675
Bme18I	GGWCC	1 cut(s)	767
BmgT120I	GGNCC	1 cut(s)	767
BmiI	GGNNCC	2 cut(s)	702, 768
BmrFI	CCNGG	1 cut(s)	675
BmsI	GCATC	2 cut(s)	331, 547
BmtI	GCTAGC	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	760
BsaJI	CCNNGG	1 cut(s)	333
BsaWI	WCCGGW	4 cut(s)	155, 313, 703, 735
Bsc4I	CCNNNNNNNGG	1 cut(s)	607
Bse118I	RCCGGY	1 cut(s)	171
Bse1I	ACTGG	1 cut(s)	530
BseAI	TCCGGA	1 cut(s)	313
BseBI	CCWGG	1 cut(s)	675
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	1 cut(s)	607
BseMII	CTCAG	1 cut(s)	173
BseNI	ACTGG	1 cut(s)	530
Bsh1285I	CGRYCG	1 cut(s)	800
BshFI	GGCC	1 cut(s)	817
BshNI	GGYRCC	1 cut(s)	700
BsiEI	CGRYCG	1 cut(s)	800
BsiSI	CCGG	6 cut(s)	156, 172, 243, 314, 704, 736
BslFI	GGGAC	1 cut(s)	850
BslI	CCNNNNNNNGG	1 cut(s)	607
BsmAI	GTCTC	3 cut(s)	146, 206, 444
BsmBI	CGTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	850
BsnI	GGCC	1 cut(s)	817
Bsp13I	TCCGGA	1 cut(s)	313
BspACI	CCGC	5 cut(s)	35, 38, 255, 258, 834
BspANI	GGCC	1 cut(s)	817
BspCNI	CTCAG	1 cut(s)	174
BspEI	TCCGGA	1 cut(s)	313
BspLI	GGNNCC	2 cut(s)	702, 768
BspOI	GCTAGC	1 cut(s)	44
BspT107I	GGYRCC	1 cut(s)	700
BsrFI	RCCGGY	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	530
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	333
BssNAI	GTATAC	1 cut(s)	552
Bst1107I	GTATAC	1 cut(s)	552
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	5 cut(s)	251, 352, 746, 798, 841
Bst6I	CTCTTC	1 cut(s)	24
BstBAI	YACGTR	1 cut(s)	760
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	182, 664
BstEII	GGTNACC	1 cut(s)	596
BstENI	CCTNNNNNAGG	1 cut(s)	605
BstF5I	GGATG	1 cut(s)	343
BstHHI	GCGC	1 cut(s)	229
BstMAI	GTCTC	3 cut(s)	146, 206, 444
BstMCI	CGRYCG	1 cut(s)	800
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BstNI	CCWGG	1 cut(s)	675
BstPI	GGTNACC	1 cut(s)	596
BstSCI	CCNGG	1 cut(s)	673
BstSFI	CTRYAG	1 cut(s)	363
BstZ17I	GTATAC	1 cut(s)	552
BsuI	GTATCC	1 cut(s)	441
BsuRI	GGCC	1 cut(s)	817
BtsCI	GGATG	1 cut(s)	343
BtsIMutI	CAGTG	1 cut(s)	846
Cac8I	GCNNGC	1 cut(s)	42
CfoI	GCGC	1 cut(s)	229
Cfr10I	RCCGGY	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	767
Csp6I	GTAC	2 cut(s)	611, 701
CviJI	RGCY	7 cut(s)	44, 362, 368, 493, 670, 817, 855
CviKI_1	RGCY	7 cut(s)	44, 362, 368, 493, 670, 817, 855
CviQI	GTAC	2 cut(s)	611, 701
DdeI	CTNAG	2 cut(s)	182, 664
DraI	TTTAAA	2 cut(s)	168, 520
DrdI	GACNNNNNNGTC	1 cut(s)	220
DseDI	GACNNNNNNGTC	1 cut(s)	220
EaeI	YGGCCR	1 cut(s)	815
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
EciI	GGCGGA	2 cut(s)	24, 273
Eco32I	GATATC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	767
Eco57I	CTGAAG	1 cut(s)	521
Eco91I	GGTNACC	1 cut(s)	596
EcoNI	CCTNNNNNAGG	1 cut(s)	605
EcoO109I	RGGNCCY	1 cut(s)	767
EcoO65I	GGTNACC	1 cut(s)	596
EcoRII	CCWGG	1 cut(s)	673
EcoRV	GATATC	1 cut(s)	15
Esp3I	CGTCTC	1 cut(s)	146
FaiI	YATR	9 cut(s)	192, 365, 411, 428, 552, 615, 681, 750, 763
FalI	AAGNNNNNCTT	2 cut(s)	585, 617
FaqI	GGGAC	1 cut(s)	850
FauI	CCCGC	1 cut(s)	827
FblI	GTMKAC	1 cut(s)	551
Fnu4HI	GCNGC	2 cut(s)	38, 256
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	2 cut(s)	38, 256
FspBI	CTAG	3 cut(s)	41, 645, 845
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	2 cut(s)	38, 256
HaeIII	GGCC	1 cut(s)	817
HapII	CCGG	6 cut(s)	156, 172, 243, 314, 704, 736
HhaI	GCGC	1 cut(s)	229
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HinfI	GANTC	4 cut(s)	59, 203, 239, 752
HpaII	CCGG	6 cut(s)	156, 172, 243, 314, 704, 736
HphI	GGTGA	7 cut(s)	19, 100, 281, 296, 484, 608, 740
Hpy166II	GTNNAC	2 cut(s)	527, 552
Hpy188I	TCNGA	3 cut(s)	58, 183, 337
Hpy188III	TCNNGA	5 cut(s)	69, 79, 314, 487, 539
Hpy8I	GTNNAC	2 cut(s)	527, 552
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	4 cut(s)	426, 463, 587, 842
HpyCH4III	ACNGT	5 cut(s)	251, 352, 746, 798, 841
HpyCH4IV	ACGT	2 cut(s)	139, 759
HpyCH4V	TGCA	3 cut(s)	344, 464, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
HpyF3I	CTNAG	2 cut(s)	182, 664
HpySE526I	ACGT	2 cut(s)	139, 759
HspAI	GCGC	1 cut(s)	227
Kpn2I	TCCGGA	1 cut(s)	313
KpnI	GGTACC	1 cut(s)	704
LweI	GCATC	2 cut(s)	331, 547
MaeI	CTAG	3 cut(s)	41, 645, 845
MaeII	ACGT	2 cut(s)	139, 759
MaeIII	GTNAC	1 cut(s)	596
MboII	GAAGA	3 cut(s)	11, 527, 793
MlsI	TGGCCA	1 cut(s)	817
MluCI	AATT	8 cut(s)	64, 94, 104, 145, 163, 656, 693, 709
MluNI	TGGCCA	1 cut(s)	817
MlyI	GAGTC	1 cut(s)	233
MmeI	TCCRAC	2 cut(s)	303, 427
MnlI	CCTC	5 cut(s)	286, 343, 601, 681, 780
Mox20I	TGGCCA	1 cut(s)	817
MroI	TCCGGA	1 cut(s)	313
MscI	TGGCCA	1 cut(s)	817
MseI	TTAA	5 cut(s)	167, 198, 519, 573, 633
Msp20I	TGGCCA	1 cut(s)	817
MspI	CCGG	6 cut(s)	156, 172, 243, 314, 704, 736
MspR9I	CCNGG	1 cut(s)	675
MvaI	CCWGG	1 cut(s)	675
MwoI	GCNNNNNNNGC	1 cut(s)	252
NheI	GCTAGC	1 cut(s)	40
NlaIV	GGNNCC	2 cut(s)	702, 768
NmuCI	GTSAC	1 cut(s)	596
PfeI	GAWTC	3 cut(s)	59, 203, 752
PkrI	GCNGC	2 cut(s)	39, 257
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
Ppu21I	YACGTR	1 cut(s)	760
PpuMI	RGGWCCY	1 cut(s)	767
Psp5II	RGGWCCY	1 cut(s)	767
Psp6I	CCWGG	1 cut(s)	673
PspEI	GGTNACC	1 cut(s)	596
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	2 cut(s)	702, 768
PspPI	GGNCC	1 cut(s)	767
PspPPI	RGGWCCY	1 cut(s)	767
RsaI	GTAC	2 cut(s)	612, 702
RsaNI	GTAC	2 cut(s)	611, 701
SaqAI	TTAA	5 cut(s)	167, 198, 519, 573, 633
SatI	GCNGC	2 cut(s)	38, 256
Sau96I	GGNCC	1 cut(s)	767
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	1 cut(s)	675
SfaNI	GCATC	2 cut(s)	331, 547
SfcI	CTRYAG	1 cut(s)	363
SinI	GGWCC	1 cut(s)	767
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	8 cut(s)	64, 94, 104, 145, 163, 656, 693, 709
SsiI	CCGC	5 cut(s)	35, 38, 255, 258, 834
SspI	AATATT	1 cut(s)	787
SspMI	CTAG	3 cut(s)	41, 645, 845
StyD4I	CCNGG	1 cut(s)	673
TaaI	ACNGT	5 cut(s)	251, 352, 746, 798, 841
TaiI	ACGT	2 cut(s)	142, 762
TasI	AATT	8 cut(s)	64, 94, 104, 145, 163, 656, 693, 709
TauI	GCSGC	2 cut(s)	40, 258
TfiI	GAWTC	3 cut(s)	59, 203, 752
Tru1I	TTAA	5 cut(s)	167, 198, 519, 573, 633
Tru9I	TTAA	5 cut(s)	167, 198, 519, 573, 633
TscAI	CASTG	1 cut(s)	846
TseFI	GTSAC	1 cut(s)	596
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	3 cut(s)	649, 666, 696
TspGWI	ACGGA	1 cut(s)	592
TspRI	CASTG	1 cut(s)	846
VpaK11BI	GGWCC	1 cut(s)	767
XagI	CCTNNNNNAGG	1 cut(s)	605
XapI	RAATTY	3 cut(s)	163, 656, 709
XmiI	GTMKAC	1 cut(s)	551
XspI	CTAG	3 cut(s)	41, 645, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.