Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0010175

Physical Location & Seq

Genomic Coordinates Reverse (-)

3795310 .. 3797673

Gene Structure 2364 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016087

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGCTCTCTCTACAGTTCTTCCCTCCATTACCTTCCCTCCAAAACCCTAATCCCAACCACACCCACTTCTCCATTCCCATCAAAAGCCCCAATTTCACATCCCTCAATCTCCGCCCACTTTCCAAAACCTCCAATTCCAAGCTCTCAATCAAAACCCACTTCAGAAAACTCGTCTGCAATGCGTTGAAGGACTCCGGTAAAGAAAAGAAGGTGTCTTTGGACAGTGGCGGCGGCGGAGACAGCGGAGGAGGCGGCGGCGGTGACGGCGGCGATGATGAACAGGGGGAGAAGAAAAGTGGGCCCTTGCCGGAATGGTTGAATATAACAACTGATGATGCCAAGACGGTGTTTGCGGCAATTGCAGTATCGCTTGCGTTTCGGTCTTTCGTAGCTGAGCCGAGGTTTATTCCTTCCTTGTCAATGTATCCTACTTTGGATGTTGGGGATAGAATTGTAGCCGAAAAGGTTTCATATTACTTCAGAAAGCCTTGTGCCAATGATATAGTTATCTTTAAAAGTCCACCGGTCCTTCAGGAAGTAGGATATACTGACCTTGACGTCTTCATTAAACGAATAGTGGCGAAGGAAGGTGATACTGTAGAGGTCCGCAATGGGAAGCTCATAGTTAATGGGGTGGAGAGAAATGAAAAATTCATCCTTGAACCACCTTCTTATAATATGACCCCTATTACTGTGCCAGAGAACTCTGTTTTTGTGATGGGTGACAATAGAAATAACAGCTATGATTCACACGTATGGGGTCCACTGCCAGCCAAGAACATTTTAGGCCGATCTATCTTTCGGTACTGGCCCCTGAAAAGGATTGGCGCCACGGTTCTTGAGACCGGTTGTGCTGTTGACAAGCAGGAGAGCGTTCCAGCGTCTCAACCAAAGGAAGGTGCATCATTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0055035 GO:0061024 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

305

Amino Acids

33.21

Weight (kDa)

8.61

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S26	PF10502	113 - 270	7.4e-43	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24590 AT3G24590
fragaria_vesca	FvH4_1g04510
malus_domestica	MD02G1044900.v1.1 MD15G1183400.v1.1
prunus_persica	Prupe.7G232700_v2.0.a1 Prupe.7G232700_v2.0.a1
pyrus_communis	pycom02g03760 pycom15g16520
rosa_chinensis	RchiOBHm_Chr2g0090191
rosa_laevigata	RLG00000016087 RLG00000016089
rosa_multiflora	Rmu_sc0007981.1_g000001 Rmu_sc0011117.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151380
rosa_rugosa	Rorug02G0005500
rosa_samantha	Rh2AG051300 Rh2BG050000 Rh2BG050100 Rh2CG052300
rosa_wichuraiana	Rw2G004530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	675
AasI	GACNNNNNNGTC	1 cut(s)	557
AatII	GACGTC	1 cut(s)	561
AccB1I	GGYRCC	1 cut(s)	827
AcsI	RAATTY	1 cut(s)	650
AcuI	CTGAAG	3 cut(s)	145, 463, 515
AcyI	GRCGYC	2 cut(s)	558, 828
AfaI	GTAC	1 cut(s)	806
AfiI	CCNNNNNNNGG	2 cut(s)	819, 896
AflIII	ACRYGT	1 cut(s)	751
AgeI	ACCGGT	2 cut(s)	523, 845
AgsI	TTSAA	4 cut(s)	187, 319, 662, 910
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AluBI	AGCT	4 cut(s)	142, 392, 619, 741
AluI	AGCT	4 cut(s)	142, 392, 619, 741
Alw26I	GTCTC	3 cut(s)	231, 836, 888
AoxI	GGCC	3 cut(s)	299, 787, 809
ApaI	GGGCCC	1 cut(s)	303
ApoI	RAATTY	1 cut(s)	650
AsiGI	ACCGGT	2 cut(s)	523, 845
AspLEI	GCGC	1 cut(s)	830
AspS9I	GGNCC	6 cut(s)	299, 300, 526, 604, 761, 810
AsuHPI	GGTGA	3 cut(s)	272, 602, 734
AvaII	GGWCC	3 cut(s)	526, 604, 761
BaeGI	GKGCMC	1 cut(s)	303
BanI	GGYRCC	1 cut(s)	827
BanII	GRGCYC	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	553
BccI	CCATC	2 cut(s)	86, 712
BceAI	ACGGC	1 cut(s)	280
BciVI	GTATCC	1 cut(s)	435
BcoDI	GTCTC	3 cut(s)	231, 836, 888
BfmI	CTRYAG	2 cut(s)	11, 597
BfoI	RGCGCY	1 cut(s)	831
BfuI	GTATCC	1 cut(s)	435
BisI	GCNGC	6 cut(s)	229, 232, 253, 256, 268, 354
BlpI	GCTNAGC	1 cut(s)	393
BlsI	GCNGC	6 cut(s)	230, 233, 254, 257, 269, 355
Bme18I	GGWCC	3 cut(s)	526, 604, 761
BmgT120I	GGNCC	6 cut(s)	299, 300, 526, 604, 761, 810
BmiI	GGNNCC	4 cut(s)	301, 762, 812, 829
BmsI	GCATC	2 cut(s)	325, 911
BpiI	GAAGAC	1 cut(s)	553
Bpu1102I	GCTNAGC	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	860
BsaAI	YACGTR	1 cut(s)	754
BsaHI	GRCGYC	2 cut(s)	558, 828
BsaI	GGTCTC	1 cut(s)	836
BsaJI	CCNNGG	2 cut(s)	398, 831
BsaWI	WCCGGW	3 cut(s)	194, 523, 845
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bsc4I	CCNNNNNNNGG	2 cut(s)	819, 896
Bse118I	RCCGGY	2 cut(s)	523, 845
Bse1I	ACTGG	1 cut(s)	812
Bse3DI	GCAATG	2 cut(s)	184, 616
BseDI	CCNNGG	2 cut(s)	398, 831
BseGI	GGATG	3 cut(s)	98, 442, 654
BseLI	CCNNNNNNNGG	2 cut(s)	819, 896
BseMI	GCAATG	2 cut(s)	184, 616
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	1 cut(s)	812
BseRI	GAGGAG	1 cut(s)	261
BseSI	GKGCMC	1 cut(s)	303
BshFI	GGCC	3 cut(s)	301, 789, 811
BshNI	GGYRCC	1 cut(s)	827
BshTI	ACCGGT	2 cut(s)	523, 845
BsiSI	CCGG	4 cut(s)	195, 308, 524, 846
BslI	CCNNNNNNNGG	2 cut(s)	819, 896
BsmAI	GTCTC	3 cut(s)	231, 836, 888
BsmBI	CGTCTC	1 cut(s)	888
BsnI	GGCC	3 cut(s)	301, 789, 811
Bso31I	GGTCTC	1 cut(s)	836
Bsp120I	GGGCCC	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	1 cut(s)	791
Bsp1720I	GCTNAGC	1 cut(s)	393
BspANI	GGCC	3 cut(s)	301, 789, 811
BspCNI	CTCAG	1 cut(s)	385
BspLI	GGNNCC	4 cut(s)	301, 762, 812, 829
BspT107I	GGYRCC	1 cut(s)	827
BspTNI	GGTCTC	1 cut(s)	836
BsrDI	GCAATG	2 cut(s)	184, 616
BsrFI	RCCGGY	2 cut(s)	523, 845
BsrI	ACTGG	1 cut(s)	812
BssAI	RCCGGY	2 cut(s)	523, 845
BssECI	CCNNGG	2 cut(s)	398, 831
BssMI	GATC	1 cut(s)	791
BssNI	GRCGYC	2 cut(s)	558, 828
Bst4CI	ACNGT	6 cut(s)	15, 224, 346, 598, 694, 835
BstACI	GRCGYC	2 cut(s)	558, 828
BstBAI	YACGTR	1 cut(s)	754
BstC8I	GCNNGC	2 cut(s)	372, 771
BstDEI	CTNAG	1 cut(s)	393
BstDSI	CCRYGG	1 cut(s)	831
BstF5I	GGATG	3 cut(s)	98, 442, 654
BstH2I	RGCGCY	1 cut(s)	831
BstHHI	GCGC	1 cut(s)	830
BstKTI	GATC	1 cut(s)	794
BstMAI	GTCTC	3 cut(s)	231, 836, 888
BstMBI	GATC	1 cut(s)	791
BstMWI	GCNNNNNNNGC	4 cut(s)	240, 249, 264, 359
BstSFI	CTRYAG	2 cut(s)	11, 597
BstSLI	GKGCMC	1 cut(s)	303
BstV2I	GAAGAC	1 cut(s)	553
BsuI	GTATCC	1 cut(s)	435
BsuRI	GGCC	3 cut(s)	301, 789, 811
BtgI	CCRYGG	1 cut(s)	831
BtgZI	GCGATG	1 cut(s)	285
BtsCI	GGATG	3 cut(s)	98, 442, 654
BtsI	GCAGTG	1 cut(s)	764
BtsIMutI	CAGTG	2 cut(s)	229, 764
Cac8I	GCNNGC	2 cut(s)	372, 771
CfoI	GCGC	1 cut(s)	830
Cfr10I	RCCGGY	2 cut(s)	523, 845
Cfr13I	GGNCC	6 cut(s)	299, 300, 526, 604, 761, 810
CseI	GACGC	1 cut(s)	870
Csp6I	GTAC	1 cut(s)	805
CspAI	ACCGGT	2 cut(s)	523, 845
CspCI	CAANNNNNGTGG	2 cut(s)	820, 855
CviQI	GTAC	1 cut(s)	805
DdeI	CTNAG	1 cut(s)	393
DinI	GGCGCC	1 cut(s)	829
DpnI	GATC	1 cut(s)	793
DpnII	GATC	1 cut(s)	791
DraI	TTTAAA	1 cut(s)	514
DrdI	GACNNNNNNGTC	1 cut(s)	557
DseDI	GACNNNNNNGTC	1 cut(s)	557
EciI	GGCGGA	2 cut(s)	101, 249
Eco24I	GRGCYC	1 cut(s)	303
Eco31I	GGTCTC	1 cut(s)	836
Eco47I	GGWCC	3 cut(s)	526, 604, 761
Eco57I	CTGAAG	3 cut(s)	145, 463, 515
EcoO109I	RGGNCCY	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	303
EgeI	GGCGCC	1 cut(s)	829
EheI	GGCGCC	1 cut(s)	829
Esp3I	CGTCTC	1 cut(s)	888
FaiI	YATR	9 cut(s)	323, 472, 503, 546, 623, 675, 680, 744, 757
Fnu4HI	GCNGC	6 cut(s)	229, 232, 253, 256, 268, 354
FokI	GGATG	3 cut(s)	85, 449, 641
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	6 cut(s)	229, 232, 253, 256, 268, 354
GlaI	GCGC	1 cut(s)	829
GluI	GCNGC	6 cut(s)	229, 232, 253, 256, 268, 354
HaeII	RGCGCY	1 cut(s)	831
HaeIII	GGCC	3 cut(s)	301, 789, 811
HapII	CCGG	4 cut(s)	195, 308, 524, 846
HgaI	GACGC	1 cut(s)	870
HhaI	GCGC	1 cut(s)	830
Hin1I	GRCGYC	2 cut(s)	558, 828
Hin6I	GCGC	1 cut(s)	828
HinP1I	GCGC	1 cut(s)	828
HincII	GTYRAC	1 cut(s)	859
HindII	GTYRAC	1 cut(s)	859
HinfI	GANTC	2 cut(s)	191, 746
HpaII	CCGG	4 cut(s)	195, 308, 524, 846
HphI	GGTGA	3 cut(s)	272, 602, 734
Hpy166II	GTNNAC	3 cut(s)	521, 764, 859
Hpy188I	TCNGA	2 cut(s)	164, 482
Hpy188III	TCNNGA	2 cut(s)	533, 839
Hpy8I	GTNNAC	3 cut(s)	521, 764, 859
HpyAV	CCTTC	9 cut(s)	42, 181, 202, 420, 539, 577, 581, 678, 890
HpyCH4III	ACNGT	6 cut(s)	15, 224, 346, 598, 694, 835
HpyCH4IV	ACGT	2 cut(s)	558, 753
HpyCH4V	TGCA	3 cut(s)	177, 362, 902
HpyF10VI	GCNNNNNNNGC	4 cut(s)	240, 249, 264, 359
HpyF3I	CTNAG	1 cut(s)	393
HpySE526I	ACGT	2 cut(s)	558, 753
Hsp92I	GRCGYC	2 cut(s)	558, 828
HspAI	GCGC	1 cut(s)	828
KasI	GGCGCC	1 cut(s)	827
Kzo9I	GATC	1 cut(s)	791
LweI	GCATC	2 cut(s)	325, 911
MaeII	ACGT	2 cut(s)	558, 753
MaeIII	GTNAC	2 cut(s)	260, 722
MalI	GATC	1 cut(s)	793
MboI	GATC	1 cut(s)	791
MboII	GAAGA	3 cut(s)	10, 301, 553
MfeI	CAATTG	1 cut(s)	357
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	6 cut(s)	91, 133, 357, 450, 650, 910
Mly113I	GGCGCC	1 cut(s)	828
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	8 cut(s)	33, 47, 113, 139, 239, 242, 393, 595
MseI	TTAA	3 cut(s)	513, 567, 627
MslI	CAYNNNNRTG	1 cut(s)	754
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	4 cut(s)	195, 308, 524, 846
MunI	CAATTG	1 cut(s)	357
MwoI	GCNNNNNNNGC	4 cut(s)	240, 249, 264, 359
NarI	GGCGCC	1 cut(s)	828
NdeII	GATC	1 cut(s)	791
NlaIV	GGNNCC	4 cut(s)	301, 762, 812, 829
NmeAIII	GCCGAG	1 cut(s)	423
NmuCI	GTSAC	2 cut(s)	260, 722
PfeI	GAWTC	1 cut(s)	746
PinAI	ACCGGT	2 cut(s)	523, 845
PkrI	GCNGC	6 cut(s)	230, 233, 254, 257, 269, 355
PleI	GAGTC	1 cut(s)	185
PluTI	GGCGCC	1 cut(s)	831
PpsI	GAGTC	1 cut(s)	185
Ppu21I	YACGTR	1 cut(s)	754
PsiI	TTATAA	1 cut(s)	675
PspN4I	GGNNCC	4 cut(s)	301, 762, 812, 829
PspOMI	GGGCCC	1 cut(s)	299
PspPI	GGNCC	6 cut(s)	299, 300, 526, 604, 761, 810
RsaI	GTAC	1 cut(s)	806
RsaNI	GTAC	1 cut(s)	805
RseI	CAYNNNNRTG	1 cut(s)	754
SaqAI	TTAA	3 cut(s)	513, 567, 627
SatI	GCNGC	6 cut(s)	229, 232, 253, 256, 268, 354
Sau3AI	GATC	1 cut(s)	791
Sau96I	GGNCC	6 cut(s)	299, 300, 526, 604, 761, 810
SchI	GAGTC	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	303
SfaNI	GCATC	2 cut(s)	325, 911
SfcI	CTRYAG	2 cut(s)	11, 597
SfoI	GGCGCC	1 cut(s)	829
SinI	GGWCC	3 cut(s)	526, 604, 761
SmiMI	CAYNNNNRTG	1 cut(s)	754
SmlI	CTYRAG	1 cut(s)	839
SmoI	CTYRAG	1 cut(s)	839
Sse9I	AATT	6 cut(s)	91, 133, 357, 450, 650, 910
SspDI	GGCGCC	1 cut(s)	827
TaaI	ACNGT	6 cut(s)	15, 224, 346, 598, 694, 835
TaiI	ACGT	2 cut(s)	561, 756
TaqII	GACCGA	1 cut(s)	369
TasI	AATT	6 cut(s)	91, 133, 357, 450, 650, 910
TauI	GCSGC	6 cut(s)	231, 234, 255, 258, 270, 356
TfiI	GAWTC	1 cut(s)	746
Tru1I	TTAA	3 cut(s)	513, 567, 627
Tru9I	TTAA	3 cut(s)	513, 567, 627
TscAI	CASTG	2 cut(s)	229, 771
TseFI	GTSAC	2 cut(s)	260, 722
Tsp45I	GTSAC	2 cut(s)	260, 722
TspDTI	ATGAA	5 cut(s)	291, 459, 553, 643, 660
TspRI	CASTG	2 cut(s)	229, 771
VpaK11BI	GGWCC	3 cut(s)	526, 604, 761
XapI	RAATTY	1 cut(s)	650
ZraI	GACGTC	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.