Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010175

Physical Location & Seq

Genomic Coordinates Forward (+)

88639369 .. 88641869

Gene Structure 2501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00151380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGCTCTCTCTACAGTTCTTCCCTCCATTACCTTCCCTCCAAAACCCTAATCCCGACCACACCCACTTCTCCATTCCCATCAAAAACCCCAATTTCACATCCCTCAATCTCCGCCCACTTTCCAAAACCCCCAATTCCAAGCTCTCAATCAAAACCCACTTCAGAAAACTCGTCTGCAATGCGTTGAAGGACTCCGGTAAAGAAAAGAAGGTGTCTTTGGACAGCGGCGGCGGCGGAGACGGCGGAGAAGGCGGCGGCGGTGACGGTGGCGATGATGAGCAAGGGGAGAAGAAAAGTGGGCCGCTGCCGGAATGGTTGAATATAACAACTGATGATGCCAAGACGGTGTTTGCGGCAATTGCAGTATCGCTTGCGTTTCGGTCTTTCATAGCTGAGCCGAGGTTTATTCCTTCCTTGTCAATGTACCCTACTTTGGATGTTGGGGATAGAATTGTAGCTGAAAAGTTAATATTGTTACCAGTTAATTCAGATATGTGTGGAGTTTTTGTTACGATTGCCCTGGCTGAAAAGTTACGAACTTGGGTTTCATATTACTTCAGAAAGCCATGTGCCAATGATATAGTTATTTTTAAAAGTCCACCGGTCCTTCAGGAAGTAGGATATACTGACCTTGACGTCTTCATTAAACGAATAGTGGCGAAGGAAGGTGATACCGTAGAGGTCCACAATGGGAAGCTCATAGTTAATGGGGTGGAGAGAGATGAAAAATTCATCCTTGAACCACCTTCTTATAATATGACGCCTATTACTGTGCCAGAGAACTCTGTTTTTGTGATGGGTGACAATAGAAATAACAGCTATGATTCACACGTATGGGGTCCACTGCCAGCCAAGAACATTTTAGGCCGATCTATCTTTCGGTACTGGCCCCTGAAAAGGATTGGCGCCACGGTTCTGGAGACCGGTTGTGCTGTTGACAAGCAGGAGAGCGTTCCAGCGTCTCAACCAAAGGAAGGTGGATCATTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0055035 GO:0061024 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

330

Amino Acids

36.16

Weight (kDa)

6.54

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S26	PF10502	113 - 296	7.3e-38	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24590 AT3G24590
fragaria_vesca	FvH4_1g04510
malus_domestica	MD02G1044900.v1.1 MD15G1183400.v1.1
prunus_persica	Prupe.7G232700_v2.0.a1 Prupe.7G232700_v2.0.a1
pyrus_communis	pycom02g03760 pycom15g16520
rosa_chinensis	RchiOBHm_Chr2g0090191
rosa_laevigata	RLG00000016087 RLG00000016089
rosa_multiflora	Rmu_sc0007981.1_g000001 Rmu_sc0011117.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151380
rosa_rugosa	Rorug02G0005500
rosa_samantha	Rh2AG051300 Rh2BG050000 Rh2BG050100 Rh2CG052300
rosa_wichuraiana	Rw2G004530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	753
AasI	GACNNNNNNGTC	1 cut(s)	635
AatII	GACGTC	1 cut(s)	639
AccB1I	GGYRCC	1 cut(s)	905
AclWI	GGATC	1 cut(s)	988
AcsI	RAATTY	1 cut(s)	728
AcuI	CTGAAG	3 cut(s)	145, 541, 593
AcyI	GRCGYC	3 cut(s)	636, 761, 906
AfaI	GTAC	2 cut(s)	425, 884
AfiI	CCNNNNNNNGG	3 cut(s)	433, 897, 974
AflIII	ACRYGT	1 cut(s)	829
AgeI	ACCGGT	2 cut(s)	601, 923
AgsI	TTSAA	4 cut(s)	187, 319, 740, 988
AjnI	CCWGG	1 cut(s)	519
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AluBI	AGCT	5 cut(s)	142, 392, 458, 697, 819
AluI	AGCT	5 cut(s)	142, 392, 458, 697, 819
Alw26I	GTCTC	3 cut(s)	231, 914, 966
AlwI	GGATC	1 cut(s)	988
AoxI	GGCC	3 cut(s)	299, 865, 887
ApeKI	GCWGC	1 cut(s)	304
ApoI	RAATTY	1 cut(s)	728
AsiGI	ACCGGT	2 cut(s)	601, 923
AspLEI	GCGC	1 cut(s)	908
AspS9I	GGNCC	5 cut(s)	299, 604, 682, 839, 888
AsuHPI	GGTGA	3 cut(s)	272, 680, 812
AvaII	GGWCC	3 cut(s)	604, 682, 839
BanI	GGYRCC	1 cut(s)	905
BbsI	GAAGAC	1 cut(s)	631
BbvI	GCAGC	1 cut(s)	291
BccI	CCATC	2 cut(s)	86, 790
BceAI	ACGGC	1 cut(s)	256
BciT130I	CCWGG	1 cut(s)	521
BcoDI	GTCTC	3 cut(s)	231, 914, 966
BfmI	CTRYAG	1 cut(s)	11
BfoI	RGCGCY	1 cut(s)	909
BisI	GCNGC	8 cut(s)	226, 229, 232, 253, 256, 302, 305, 354
BlpI	GCTNAGC	1 cut(s)	393
BlsI	GCNGC	8 cut(s)	227, 230, 233, 254, 257, 303, 306, 355
Bme1390I	CCNGG	1 cut(s)	521
Bme18I	GGWCC	3 cut(s)	604, 682, 839
BmgT120I	GGNCC	5 cut(s)	299, 604, 682, 839, 888
BmiI	GGNNCC	3 cut(s)	840, 890, 907
BmrFI	CCNGG	1 cut(s)	521
BmsI	GCATC	1 cut(s)	325
BpiI	GAAGAC	1 cut(s)	631
BpmI	CTGGAG	1 cut(s)	938
Bpu1102I	GCTNAGC	1 cut(s)	393
BsaAI	YACGTR	1 cut(s)	832
BsaHI	GRCGYC	3 cut(s)	636, 761, 906
BsaI	GGTCTC	1 cut(s)	914
BsaJI	CCNNGG	3 cut(s)	398, 519, 909
BsaWI	WCCGGW	3 cut(s)	194, 601, 923
BsaXI	ACNNNNNCTCC	4 cut(s)	21, 51, 492, 522
Bsc4I	CCNNNNNNNGG	3 cut(s)	433, 897, 974
Bse118I	RCCGGY	2 cut(s)	601, 923
Bse1I	ACTGG	2 cut(s)	479, 890
Bse3DI	GCAATG	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	521
BseDI	CCNNGG	3 cut(s)	398, 519, 909
BseGI	GGATG	3 cut(s)	98, 442, 732
BseLI	CCNNNNNNNGG	3 cut(s)	433, 897, 974
BseMI	GCAATG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	2 cut(s)	479, 890
BseXI	GCAGC	1 cut(s)	291
BshFI	GGCC	3 cut(s)	301, 867, 889
BshNI	GGYRCC	1 cut(s)	905
BshTI	ACCGGT	2 cut(s)	601, 923
BsiSI	CCGG	4 cut(s)	195, 308, 602, 924
BslI	CCNNNNNNNGG	3 cut(s)	433, 897, 974
BsmAI	GTCTC	3 cut(s)	231, 914, 966
BsmBI	CGTCTC	2 cut(s)	231, 966
BsnI	GGCC	3 cut(s)	301, 867, 889
Bso31I	GGTCTC	1 cut(s)	914
Bsp143I	GATC	2 cut(s)	869, 980
Bsp1720I	GCTNAGC	1 cut(s)	393
BspANI	GGCC	3 cut(s)	301, 867, 889
BspCNI	CTCAG	1 cut(s)	385
BspLI	GGNNCC	3 cut(s)	840, 890, 907
BspPI	GGATC	1 cut(s)	988
BspT107I	GGYRCC	1 cut(s)	905
BspTNI	GGTCTC	1 cut(s)	914
BsrDI	GCAATG	1 cut(s)	184
BsrFI	RCCGGY	2 cut(s)	601, 923
BsrI	ACTGG	2 cut(s)	479, 890
BssAI	RCCGGY	2 cut(s)	601, 923
BssECI	CCNNGG	3 cut(s)	398, 519, 909
BssMI	GATC	2 cut(s)	869, 980
BssNI	GRCGYC	3 cut(s)	636, 761, 906
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	6 cut(s)	15, 266, 346, 676, 772, 913
BstACI	GRCGYC	3 cut(s)	636, 761, 906
BstBAI	YACGTR	1 cut(s)	832
BstC8I	GCNNGC	2 cut(s)	372, 849
BstDEI	CTNAG	1 cut(s)	393
BstDSI	CCRYGG	1 cut(s)	909
BstF5I	GGATG	3 cut(s)	98, 442, 732
BstH2I	RGCGCY	1 cut(s)	909
BstHHI	GCGC	1 cut(s)	908
BstKTI	GATC	2 cut(s)	872, 983
BstMAI	GTCTC	3 cut(s)	231, 914, 966
BstMBI	GATC	2 cut(s)	869, 980
BstMWI	GCNNNNNNNGC	4 cut(s)	231, 240, 249, 359
BstNI	CCWGG	1 cut(s)	521
BstSCI	CCNGG	1 cut(s)	519
BstSFI	CTRYAG	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	291
BstV2I	GAAGAC	1 cut(s)	631
BstXI	CCANNNNNNTGG	1 cut(s)	916
BsuRI	GGCC	3 cut(s)	301, 867, 889
BtgI	CCRYGG	1 cut(s)	909
BtgZI	GCGATG	1 cut(s)	285
BtsCI	GGATG	3 cut(s)	98, 442, 732
BtsI	GCAGTG	1 cut(s)	842
BtsIMutI	CAGTG	1 cut(s)	842
Cac8I	GCNNGC	2 cut(s)	372, 849
CfoI	GCGC	1 cut(s)	908
Cfr10I	RCCGGY	2 cut(s)	601, 923
Cfr13I	GGNCC	5 cut(s)	299, 604, 682, 839, 888
CseI	GACGC	2 cut(s)	769, 948
Csp6I	GTAC	2 cut(s)	424, 883
CspAI	ACCGGT	2 cut(s)	601, 923
CviAII	CATG	1 cut(s)	567
CviQI	GTAC	2 cut(s)	424, 883
DdeI	CTNAG	1 cut(s)	393
DinI	GGCGCC	1 cut(s)	907
DpnI	GATC	2 cut(s)	871, 982
DpnII	GATC	2 cut(s)	869, 980
DraI	TTTAAA	1 cut(s)	592
DrdI	GACNNNNNNGTC	1 cut(s)	635
DseDI	GACNNNNNNGTC	1 cut(s)	635
EciI	GGCGGA	3 cut(s)	101, 249, 258
Eco31I	GGTCTC	1 cut(s)	914
Eco47I	GGWCC	3 cut(s)	604, 682, 839
Eco57I	CTGAAG	3 cut(s)	145, 541, 593
EcoRII	CCWGG	1 cut(s)	519
EgeI	GGCGCC	1 cut(s)	907
EheI	GGCGCC	1 cut(s)	907
Esp3I	CGTCTC	2 cut(s)	231, 966
FaeI	CATG	1 cut(s)	570
FatI	CATG	1 cut(s)	566
Fnu4HI	GCNGC	8 cut(s)	226, 229, 232, 253, 256, 302, 305, 354
FokI	GGATG	3 cut(s)	85, 449, 719
Fsp4HI	GCNGC	8 cut(s)	226, 229, 232, 253, 256, 302, 305, 354
GlaI	GCGC	1 cut(s)	907
GluI	GCNGC	8 cut(s)	226, 229, 232, 253, 256, 302, 305, 354
GsuI	CTGGAG	1 cut(s)	938
HaeII	RGCGCY	1 cut(s)	909
HaeIII	GGCC	3 cut(s)	301, 867, 889
HapII	CCGG	4 cut(s)	195, 308, 602, 924
HgaI	GACGC	2 cut(s)	769, 948
HhaI	GCGC	1 cut(s)	908
Hin1I	GRCGYC	3 cut(s)	636, 761, 906
Hin1II	CATG	1 cut(s)	570
Hin6I	GCGC	1 cut(s)	906
HinP1I	GCGC	1 cut(s)	906
HincII	GTYRAC	1 cut(s)	937
HindII	GTYRAC	1 cut(s)	937
HinfI	GANTC	2 cut(s)	191, 824
HpaII	CCGG	4 cut(s)	195, 308, 602, 924
HphI	GGTGA	3 cut(s)	272, 680, 812
Hpy166II	GTNNAC	4 cut(s)	599, 685, 842, 937
Hpy188I	TCNGA	3 cut(s)	164, 490, 560
Hpy188III	TCNNGA	3 cut(s)	53, 611, 917
Hpy8I	GTNNAC	4 cut(s)	599, 685, 842, 937
HpyCH4III	ACNGT	6 cut(s)	15, 266, 346, 676, 772, 913
HpyCH4IV	ACGT	2 cut(s)	636, 831
HpyCH4V	TGCA	2 cut(s)	177, 362
HpyF10VI	GCNNNNNNNGC	4 cut(s)	231, 240, 249, 359
HpyF3I	CTNAG	1 cut(s)	393
HpySE526I	ACGT	2 cut(s)	636, 831
Hsp92I	GRCGYC	3 cut(s)	636, 761, 906
Hsp92II	CATG	1 cut(s)	570
HspAI	GCGC	1 cut(s)	906
KasI	GGCGCC	1 cut(s)	905
Kzo9I	GATC	2 cut(s)	869, 980
Lsp1109I	GCAGC	1 cut(s)	291
LweI	GCATC	1 cut(s)	325
MaeII	ACGT	2 cut(s)	636, 831
MaeIII	GTNAC	5 cut(s)	260, 474, 508, 531, 800
MalI	GATC	2 cut(s)	871, 982
MboI	GATC	2 cut(s)	869, 980
MboII	GAAGA	3 cut(s)	10, 301, 631
MfeI	CAATTG	1 cut(s)	357
MluCI	AATT	7 cut(s)	91, 133, 357, 450, 484, 728, 988
Mly113I	GGCGCC	1 cut(s)	906
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	5 cut(s)	33, 47, 113, 393, 673
MseI	TTAA	5 cut(s)	467, 483, 591, 645, 705
MslI	CAYNNNNRTG	1 cut(s)	832
MspA1I	CMGCKG	2 cut(s)	225, 304
MspI	CCGG	4 cut(s)	195, 308, 602, 924
MspR9I	CCNGG	1 cut(s)	521
MunI	CAATTG	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	521
MwoI	GCNNNNNNNGC	4 cut(s)	231, 240, 249, 359
NarI	GGCGCC	1 cut(s)	906
NdeII	GATC	2 cut(s)	869, 980
NlaIII	CATG	1 cut(s)	570
NlaIV	GGNNCC	3 cut(s)	840, 890, 907
NmeAIII	GCCGAG	1 cut(s)	423
NmuCI	GTSAC	2 cut(s)	260, 800
PfeI	GAWTC	1 cut(s)	824
PinAI	ACCGGT	2 cut(s)	601, 923
PkrI	GCNGC	8 cut(s)	227, 230, 233, 254, 257, 303, 306, 355
PleI	GAGTC	1 cut(s)	185
PluTI	GGCGCC	1 cut(s)	909
PpsI	GAGTC	1 cut(s)	185
Ppu21I	YACGTR	1 cut(s)	832
PsiI	TTATAA	1 cut(s)	753
Psp6I	CCWGG	1 cut(s)	519
PspGI	CCWGG	1 cut(s)	519
PspN4I	GGNNCC	3 cut(s)	840, 890, 907
PspPI	GGNCC	5 cut(s)	299, 604, 682, 839, 888
RsaI	GTAC	2 cut(s)	425, 884
RsaNI	GTAC	2 cut(s)	424, 883
RseI	CAYNNNNRTG	1 cut(s)	832
SaqAI	TTAA	5 cut(s)	467, 483, 591, 645, 705
SatI	GCNGC	8 cut(s)	226, 229, 232, 253, 256, 302, 305, 354
Sau3AI	GATC	2 cut(s)	869, 980
Sau96I	GGNCC	5 cut(s)	299, 604, 682, 839, 888
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	521
SfaNI	GCATC	1 cut(s)	325
SfcI	CTRYAG	1 cut(s)	11
SfoI	GGCGCC	1 cut(s)	907
SinI	GGWCC	3 cut(s)	604, 682, 839
SmiMI	CAYNNNNRTG	1 cut(s)	832
Sse9I	AATT	7 cut(s)	91, 133, 357, 450, 484, 728, 988
SspDI	GGCGCC	1 cut(s)	905
SspI	AATATT	1 cut(s)	471
StyD4I	CCNGG	1 cut(s)	519
TaaI	ACNGT	6 cut(s)	15, 266, 346, 676, 772, 913
TaiI	ACGT	2 cut(s)	639, 834
TaqII	GACCGA	1 cut(s)	369
TasI	AATT	7 cut(s)	91, 133, 357, 450, 484, 728, 988
TauI	GCSGC	7 cut(s)	228, 231, 234, 255, 258, 304, 356
TfiI	GAWTC	1 cut(s)	824
Tru1I	TTAA	5 cut(s)	467, 483, 591, 645, 705
Tru9I	TTAA	5 cut(s)	467, 483, 591, 645, 705
TscAI	CASTG	1 cut(s)	849
TseFI	GTSAC	2 cut(s)	260, 800
TseI	GCWGC	1 cut(s)	304
Tsp45I	GTSAC	2 cut(s)	260, 800
TspDTI	ATGAA	5 cut(s)	376, 537, 631, 721, 738
TspRI	CASTG	1 cut(s)	849
VpaK11BI	GGWCC	3 cut(s)	604, 682, 839
XapI	RAATTY	1 cut(s)	728
ZraI	GACGTC	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.