Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011117.1

Orthogroup ID

OG0010175

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 939

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011117.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

gtccgcaatgggaagctcatagttaatggggtggagagaaatgaaaaattcatccttgaaccaccttcttataatatgacgcctattactgtgccagagaactctgtttttgtgatgggtgacaatagaaataacagctatgattcacacgtatggggtccactgccagccaagaacattttaggccgatctatctttcggtactggcccctgaaaaggattggcgccacggttcttgagaccggttgtgctgttgacaggcaggagagcgttccagcgtctcaaccaaaggaaggtggatcattgaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0055035 GO:0061024 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

103

Amino Acids

11.44

Weight (kDa)

8.9

Isoelectric Point (pI)

47.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24590 AT3G24590
fragaria_vesca	FvH4_1g04510
malus_domestica	MD02G1044900.v1.1 MD15G1183400.v1.1
prunus_persica	Prupe.7G232700_v2.0.a1 Prupe.7G232700_v2.0.a1
pyrus_communis	pycom02g03760 pycom15g16520
rosa_chinensis	RchiOBHm_Chr2g0090191
rosa_laevigata	RLG00000016087 RLG00000016089
rosa_multiflora	Rmu_sc0007981.1_g000001 Rmu_sc0011117.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151380
rosa_rugosa	Rorug02G0005500
rosa_samantha	Rh2AG051300 Rh2BG050000 Rh2BG050100 Rh2CG052300
rosa_wichuraiana	Rw2G004530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	72
AccB1I	GGYRCC	1 cut(s)	224
AciI	CCGC	1 cut(s)	4
AclWI	GGATC	1 cut(s)	307
AcsI	RAATTY	1 cut(s)	47
AcyI	GRCGYC	2 cut(s)	80, 225
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	2 cut(s)	216, 293
AflIII	ACRYGT	1 cut(s)	148
AgeI	ACCGGT	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	59, 307
AluBI	AGCT	2 cut(s)	16, 138
AluI	AGCT	2 cut(s)	16, 138
Alw26I	GTCTC	2 cut(s)	233, 285
AlwI	GGATC	1 cut(s)	307
AoxI	GGCC	2 cut(s)	184, 206
ApoI	RAATTY	1 cut(s)	47
AsiGI	ACCGGT	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	2 cut(s)	158, 207
AsuHPI	GGTGA	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	224
BccI	CCATC	1 cut(s)	109
BcoDI	GTCTC	2 cut(s)	233, 285
BfoI	RGCGCY	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	2 cut(s)	158, 207
BmiI	GGNNCC	3 cut(s)	159, 209, 226
BpuEI	CTTGAG	1 cut(s)	257
BsaAI	YACGTR	1 cut(s)	151
BsaHI	GRCGYC	2 cut(s)	80, 225
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	228
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 293
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	209
Bse3DI	GCAATG	1 cut(s)	13
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	1 cut(s)	51
BseLI	CCNNNNNNNGG	2 cut(s)	216, 293
BseMI	GCAATG	1 cut(s)	13
BseNI	ACTGG	1 cut(s)	209
BshFI	GGCC	2 cut(s)	186, 208
BshNI	GGYRCC	1 cut(s)	224
BshTI	ACCGGT	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	243
BslI	CCNNNNNNNGG	2 cut(s)	216, 293
BsmAI	GTCTC	2 cut(s)	233, 285
BsmBI	CGTCTC	1 cut(s)	285
BsnI	GGCC	2 cut(s)	186, 208
Bso31I	GGTCTC	1 cut(s)	233
Bsp143I	GATC	2 cut(s)	188, 299
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	2 cut(s)	186, 208
BspLI	GGNNCC	3 cut(s)	159, 209, 226
BspPI	GGATC	1 cut(s)	307
BspT107I	GGYRCC	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	13
BsrFI	RCCGGY	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	2 cut(s)	188, 299
BssNI	GRCGYC	2 cut(s)	80, 225
Bst4CI	ACNGT	2 cut(s)	91, 232
BstACI	GRCGYC	2 cut(s)	80, 225
BstBAI	YACGTR	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	168
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	51
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	2 cut(s)	191, 302
BstMAI	GTCTC	2 cut(s)	233, 285
BstMBI	GATC	2 cut(s)	188, 299
BsuRI	GGCC	2 cut(s)	186, 208
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	51
BtsI	GCAGTG	1 cut(s)	161
BtsIMutI	CAGTG	1 cut(s)	161
Cac8I	GCNNGC	1 cut(s)	168
CfoI	GCGC	1 cut(s)	227
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	2 cut(s)	158, 207
CseI	GACGC	2 cut(s)	88, 267
Csp6I	GTAC	1 cut(s)	202
CspAI	ACCGGT	1 cut(s)	242
CspCI	CAANNNNNGTGG	2 cut(s)	217, 252
CviJI	RGCY	5 cut(s)	16, 138, 170, 186, 208
CviKI_1	RGCY	5 cut(s)	16, 138, 170, 186, 208
CviQI	GTAC	1 cut(s)	202
DinI	GGCGCC	1 cut(s)	226
DpnI	GATC	2 cut(s)	190, 301
DpnII	GATC	2 cut(s)	188, 299
Eco31I	GGTCTC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	158
EgeI	GGCGCC	1 cut(s)	226
EheI	GGCGCC	1 cut(s)	226
Esp3I	CGTCTC	1 cut(s)	285
FaiI	YATR	5 cut(s)	20, 72, 77, 141, 154
FokI	GGATG	1 cut(s)	38
GlaI	GCGC	1 cut(s)	226
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	2 cut(s)	186, 208
HapII	CCGG	1 cut(s)	243
HgaI	GACGC	2 cut(s)	88, 267
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	2 cut(s)	80, 225
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	1 cut(s)	143
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	2 cut(s)	161, 256
Hpy188III	TCNNGA	1 cut(s)	236
Hpy8I	GTNNAC	2 cut(s)	161, 256
HpyAV	CCTTC	2 cut(s)	75, 287
HpyCH4III	ACNGT	2 cut(s)	91, 232
HpyCH4IV	ACGT	1 cut(s)	150
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	2 cut(s)	80, 225
HspAI	GCGC	1 cut(s)	225
KasI	GGCGCC	1 cut(s)	224
Kzo9I	GATC	2 cut(s)	188, 299
LpnPI	CCDG	8 cut(s)	108, 180, 190, 224, 244, 248, 256, 288
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	2 cut(s)	190, 301
MboI	GATC	2 cut(s)	188, 299
MluCI	AATT	2 cut(s)	47, 307
Mly113I	GGCGCC	1 cut(s)	225
MseI	TTAA	1 cut(s)	24
MslI	CAYNNNNRTG	1 cut(s)	151
MspI	CCGG	1 cut(s)	243
NarI	GGCGCC	1 cut(s)	225
NdeII	GATC	2 cut(s)	188, 299
NlaIV	GGNNCC	3 cut(s)	159, 209, 226
NmuCI	GTSAC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	143
PinAI	ACCGGT	1 cut(s)	242
PluTI	GGCGCC	1 cut(s)	228
Ppu21I	YACGTR	1 cut(s)	151
PsiI	TTATAA	1 cut(s)	72
PspN4I	GGNNCC	3 cut(s)	159, 209, 226
PspPI	GGNCC	2 cut(s)	158, 207
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	24
Sau3AI	GATC	2 cut(s)	188, 299
Sau96I	GGNCC	2 cut(s)	158, 207
SetI	ASST	5 cut(s)	18, 67, 140, 153, 298
SfoI	GGCGCC	1 cut(s)	226
SinI	GGWCC	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	2 cut(s)	47, 307
SsiI	CCGC	1 cut(s)	4
SspDI	GGCGCC	1 cut(s)	224
TaaI	ACNGT	2 cut(s)	91, 232
TaiI	ACGT	1 cut(s)	153
TasI	AATT	2 cut(s)	47, 307
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	2 cut(s)	40, 57
TspRI	CASTG	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	158
XapI	RAATTY	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.