Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010175

Physical Location & Seq

Genomic Coordinates Reverse (-)

2390581 .. 2393877

Gene Structure 3297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g04510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGCTCTCTCTACACTACTCCCCTCCATTACCTTCCCTCCTATACCCTAATTCCGACCACACCCACCTCTCCATTCCCATCAAAAACCGCAATTTCTCATCCTTCAATCTCCACCCACTCCCCAAAACCCACAATTCCAAGCTCTCAATCAAAACCCACTTCAGAAAACTCGTCTGCAAAGCTTTAAAGGACTCCGGTGAAGAAAAGAAGGTGTCTTTGGACAGTGGCGGCGGCGGAGACGGCGGAGGAGGAGGCGGCGGTGACGGTGGCGACGATGAGCAGGAGGAGAAGAAGAGTGGGCCCCTGCCGGGGTGGTTGAACATAACTACCGATGATGCCAAGACAGTGTTTGCGGCAATTGCGGTGTCGCTTGCGTTTCGGTCTTTCGTAGCTGAGCCGAGGTTTATTCCTTCCTTGTCAATGTACCCTACTTTGGATGTTGGAGATAGAATTGTAGCTGAGAAGGTTTCATATTACTTCAGAAAGCCATGTGCCAATGATGTTGTTATCTTTAAAAGTCCACCGGTCCTTCAGGAAGTAGGATATACCGACCTTGACGTCTTCATTAAAAGAGTAGTGGCCAAGGAAGGTGATACTGTGGAGGTTCGCAATGGGAAGCTCATAGTTAATGGGGTCGAGAGAAATGAAAAGTTCATCCTGGAACCACCTTCTTATACTATGACACCTATAACTGTGCCAGAGAACTCAGTTTTTGTGATGGGTGACAATAGAAATAACAGCTACGATTCACACGTATGGGGTCCACTGCCAGCCAAGAATATTTTGGGAAGATCTATCTTTCGGTACTGGCCCCCGAAAAGGATTGGCGCCACTGTTCTTGAGACCGGATGTGCTGTAGACAAGCAGGAGAGTATTCCAGCATCTCAACCAAAGGAAGGTGCAGCATTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0055035 GO:0061024 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

305

Amino Acids

33.24

Weight (kDa)

7.71

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S26	PF10502	113 - 270	8.9e-43	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24590 AT3G24590
fragaria_vesca	FvH4_1g04510
malus_domestica	MD02G1044900.v1.1 MD15G1183400.v1.1
prunus_persica	Prupe.7G232700_v2.0.a1 Prupe.7G232700_v2.0.a1
pyrus_communis	pycom02g03760 pycom15g16520
rosa_chinensis	RchiOBHm_Chr2g0090191
rosa_laevigata	RLG00000016087 RLG00000016089
rosa_multiflora	Rmu_sc0007981.1_g000001 Rmu_sc0011117.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151380
rosa_rugosa	Rorug02G0005500
rosa_samantha	Rh2AG051300 Rh2BG050000 Rh2BG050100 Rh2CG052300
rosa_wichuraiana	Rw2G004530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	557
AatII	GACGTC	1 cut(s)	561
AccB1I	GGYRCC	1 cut(s)	827
AccI	GTMKAC	1 cut(s)	858
AciI	CCGC	9 cut(s)	88, 228, 231, 234, 243, 255, 258, 353, 362
AcoI	YGGCCR	1 cut(s)	579
AcuI	CTGAAG	3 cut(s)	145, 463, 515
AcyI	GRCGYC	2 cut(s)	558, 828
AfaI	GTAC	2 cut(s)	425, 806
AfiI	CCNNNNNNNGG	5 cut(s)	308, 309, 433, 819, 896
AflIII	ACRYGT	1 cut(s)	751
AgeI	ACCGGT	1 cut(s)	523
AgsI	TTSAA	3 cut(s)	106, 319, 910
AjnI	CCWGG	1 cut(s)	657
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AluBI	AGCT	6 cut(s)	142, 182, 392, 458, 619, 741
AluI	AGCT	6 cut(s)	142, 182, 392, 458, 619, 741
Alw26I	GTCTC	2 cut(s)	231, 836
AoxI	GGCC	3 cut(s)	299, 579, 809
ApaI	GGGCCC	1 cut(s)	303
ApeKI	GCWGC	1 cut(s)	902
AsiGI	ACCGGT	1 cut(s)	523
AspLEI	GCGC	1 cut(s)	830
AspS9I	GGNCC	5 cut(s)	299, 300, 526, 761, 810
AsuC2I	CCSGG	1 cut(s)	309
AsuHPI	GGTGA	4 cut(s)	209, 272, 602, 734
AvaII	GGWCC	2 cut(s)	526, 761
BaeGI	GKGCMC	1 cut(s)	303
BalI	TGGCCA	1 cut(s)	581
BanI	GGYRCC	1 cut(s)	827
BanII	GRGCYC	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	553
BccI	CCATC	2 cut(s)	86, 712
BceAI	ACGGC	1 cut(s)	256
BciT130I	CCWGG	1 cut(s)	659
BcnI	CCSGG	1 cut(s)	309
BcoDI	GTCTC	2 cut(s)	231, 836
BfmI	CTRYAG	1 cut(s)	855
BfoI	RGCGCY	1 cut(s)	831
BglII	AGATCT	1 cut(s)	791
BisI	GCNGC	5 cut(s)	229, 232, 256, 354, 903
BlpI	GCTNAGC	1 cut(s)	393
BlsI	GCNGC	5 cut(s)	230, 233, 257, 355, 904
Bme1390I	CCNGG	2 cut(s)	309, 659
Bme18I	GGWCC	2 cut(s)	526, 761
BmgT120I	GGNCC	5 cut(s)	299, 300, 526, 761, 810
BmiI	GGNNCC	6 cut(s)	301, 302, 663, 762, 812, 829
BmrFI	CCNGG	2 cut(s)	309, 659
BmsI	GCATC	2 cut(s)	325, 890
BpiI	GAAGAC	1 cut(s)	553
Bpu1102I	GCTNAGC	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	860
BpuMI	CCSGG	1 cut(s)	309
BsaAI	YACGTR	1 cut(s)	754
BsaHI	GRCGYC	2 cut(s)	558, 828
BsaI	GGTCTC	1 cut(s)	836
BsaJI	CCNNGG	3 cut(s)	308, 398, 582
BsaWI	WCCGGW	3 cut(s)	194, 523, 845
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bsc4I	CCNNNNNNNGG	5 cut(s)	308, 309, 433, 819, 896
Bse118I	RCCGGY	1 cut(s)	523
Bse1I	ACTGG	1 cut(s)	812
Bse3DI	GCAATG	1 cut(s)	616
BseBI	CCWGG	1 cut(s)	659
BseDI	CCNNGG	3 cut(s)	308, 398, 582
BseGI	GGATG	4 cut(s)	98, 442, 654, 854
BseLI	CCNNNNNNNGG	5 cut(s)	308, 309, 433, 819, 896
BseMI	GCAATG	1 cut(s)	616
BseMII	CTCAG	3 cut(s)	384, 450, 720
BseNI	ACTGG	1 cut(s)	812
BseRI	GAGGAG	3 cut(s)	261, 264, 299
BseSI	GKGCMC	1 cut(s)	303
BshFI	GGCC	3 cut(s)	301, 581, 811
BshNI	GGYRCC	1 cut(s)	827
BshTI	ACCGGT	1 cut(s)	523
BsiSI	CCGG	4 cut(s)	195, 308, 524, 846
BslI	CCNNNNNNNGG	5 cut(s)	308, 309, 433, 819, 896
BsmAI	GTCTC	2 cut(s)	231, 836
BsmBI	CGTCTC	1 cut(s)	231
BsnI	GGCC	3 cut(s)	301, 581, 811
Bso31I	GGTCTC	1 cut(s)	836
Bsp120I	GGGCCC	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	1 cut(s)	791
Bsp1720I	GCTNAGC	1 cut(s)	393
BspACI	CCGC	9 cut(s)	88, 228, 231, 234, 243, 255, 258, 353, 362
BspANI	GGCC	3 cut(s)	301, 581, 811
BspCNI	CTCAG	3 cut(s)	385, 451, 719
BspLI	GGNNCC	6 cut(s)	301, 302, 663, 762, 812, 829
BspT107I	GGYRCC	1 cut(s)	827
BspTNI	GGTCTC	1 cut(s)	836
BsrDI	GCAATG	1 cut(s)	616
BsrFI	RCCGGY	1 cut(s)	523
BsrI	ACTGG	1 cut(s)	812
BssAI	RCCGGY	1 cut(s)	523
BssECI	CCNNGG	3 cut(s)	308, 398, 582
BssMI	GATC	1 cut(s)	791
BssNI	GRCGYC	2 cut(s)	558, 828
BssT1I	CCWWGG	1 cut(s)	582
Bst2UI	CCWGG	1 cut(s)	659
Bst4CI	ACNGT	6 cut(s)	224, 266, 346, 598, 694, 835
Bst6I	CTCTTC	1 cut(s)	287
BstACI	GRCGYC	2 cut(s)	558, 828
BstBAI	YACGTR	1 cut(s)	754
BstC8I	GCNNGC	2 cut(s)	372, 771
BstDEI	CTNAG	3 cut(s)	393, 459, 706
BstF5I	GGATG	4 cut(s)	98, 442, 654, 854
BstH2I	RGCGCY	1 cut(s)	831
BstHHI	GCGC	1 cut(s)	830
BstKTI	GATC	1 cut(s)	794
BstMAI	GTCTC	2 cut(s)	231, 836
BstMBI	GATC	1 cut(s)	791
BstMWI	GCNNNNNNNGC	2 cut(s)	240, 359
BstNI	CCWGG	1 cut(s)	659
BstSCI	CCNGG	2 cut(s)	307, 657
BstSFI	CTRYAG	1 cut(s)	855
BstSLI	GKGCMC	1 cut(s)	303
BstV2I	GAAGAC	1 cut(s)	553
BstX2I	RGATCY	1 cut(s)	791
BstYI	RGATCY	1 cut(s)	791
BsuRI	GGCC	3 cut(s)	301, 581, 811
BtsCI	GGATG	4 cut(s)	98, 442, 654, 854
BtsI	GCAGTG	1 cut(s)	764
BtsIMutI	CAGTG	4 cut(s)	229, 351, 764, 831
Cac8I	GCNNGC	2 cut(s)	372, 771
CfoI	GCGC	1 cut(s)	830
Cfr10I	RCCGGY	1 cut(s)	523
Cfr13I	GGNCC	5 cut(s)	299, 300, 526, 761, 810
Csp6I	GTAC	2 cut(s)	424, 805
CspAI	ACCGGT	1 cut(s)	523
CspCI	CAANNNNNGTGG	2 cut(s)	820, 855
CviAII	CATG	1 cut(s)	489
CviQI	GTAC	2 cut(s)	424, 805
DdeI	CTNAG	3 cut(s)	393, 459, 706
DinI	GGCGCC	1 cut(s)	829
DpnI	GATC	1 cut(s)	793
DpnII	GATC	1 cut(s)	791
DraI	TTTAAA	2 cut(s)	186, 514
DrdI	GACNNNNNNGTC	1 cut(s)	557
DseDI	GACNNNNNNGTC	1 cut(s)	557
EaeI	YGGCCR	1 cut(s)	579
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
EciI	GGCGGA	2 cut(s)	249, 258
Eco130I	CCWWGG	1 cut(s)	582
Eco24I	GRGCYC	1 cut(s)	303
Eco31I	GGTCTC	1 cut(s)	836
Eco47I	GGWCC	2 cut(s)	526, 761
Eco57I	CTGAAG	3 cut(s)	145, 463, 515
EcoO109I	RGGNCCY	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	657
EcoT14I	CCWWGG	1 cut(s)	582
EcoT38I	GRGCYC	1 cut(s)	303
EgeI	GGCGCC	1 cut(s)	829
EheI	GGCGCC	1 cut(s)	829
ErhI	CCWWGG	1 cut(s)	582
Esp3I	CGTCTC	1 cut(s)	231
FaeI	CATG	1 cut(s)	492
FatI	CATG	1 cut(s)	488
FblI	GTMKAC	1 cut(s)	858
Fnu4HI	GCNGC	5 cut(s)	229, 232, 256, 354, 903
FokI	GGATG	4 cut(s)	85, 449, 641, 861
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	5 cut(s)	229, 232, 256, 354, 903
GlaI	GCGC	1 cut(s)	829
GluI	GCNGC	5 cut(s)	229, 232, 256, 354, 903
HaeII	RGCGCY	1 cut(s)	831
HaeIII	GGCC	3 cut(s)	301, 581, 811
HapII	CCGG	4 cut(s)	195, 308, 524, 846
HhaI	GCGC	1 cut(s)	830
Hin1I	GRCGYC	2 cut(s)	558, 828
Hin1II	CATG	1 cut(s)	492
Hin6I	GCGC	1 cut(s)	828
HinP1I	GCGC	1 cut(s)	828
HindIII	AAGCTT	1 cut(s)	180
HinfI	GANTC	2 cut(s)	191, 746
HpaII	CCGG	4 cut(s)	195, 308, 524, 846
HphI	GGTGA	4 cut(s)	209, 272, 602, 734
Hpy166II	GTNNAC	3 cut(s)	521, 764, 859
Hpy188I	TCNGA	3 cut(s)	55, 164, 482
Hpy188III	TCNNGA	3 cut(s)	533, 637, 839
Hpy8I	GTNNAC	3 cut(s)	521, 764, 859
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	9 cut(s)	42, 112, 202, 420, 457, 539, 581, 678, 890
HpyCH4III	ACNGT	6 cut(s)	224, 266, 346, 598, 694, 835
HpyCH4IV	ACGT	2 cut(s)	558, 753
HpyCH4V	TGCA	2 cut(s)	177, 902
HpyF10VI	GCNNNNNNNGC	2 cut(s)	240, 359
HpyF3I	CTNAG	3 cut(s)	393, 459, 706
HpySE526I	ACGT	2 cut(s)	558, 753
Hsp92I	GRCGYC	2 cut(s)	558, 828
Hsp92II	CATG	1 cut(s)	492
HspAI	GCGC	1 cut(s)	828
KasI	GGCGCC	1 cut(s)	827
Kzo9I	GATC	1 cut(s)	791
LweI	GCATC	2 cut(s)	325, 890
MaeII	ACGT	2 cut(s)	558, 753
MaeIII	GTNAC	2 cut(s)	260, 722
MalI	GATC	1 cut(s)	793
MboI	GATC	1 cut(s)	791
MboII	GAAGA	5 cut(s)	212, 301, 304, 553, 801
MfeI	CAATTG	1 cut(s)	357
MflI	RGATCY	1 cut(s)	791
MhlI	GDGCHC	1 cut(s)	303
MlsI	TGGCCA	1 cut(s)	581
MluCI	AATT	6 cut(s)	49, 91, 133, 357, 450, 910
MluNI	TGGCCA	1 cut(s)	581
Mly113I	GGCGCC	1 cut(s)	828
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	2 cut(s)	78, 421
MnlI	CCTC	9 cut(s)	33, 47, 77, 239, 242, 245, 277, 393, 595
Mox20I	TGGCCA	1 cut(s)	581
MscI	TGGCCA	1 cut(s)	581
MseI	TTAA	4 cut(s)	185, 513, 567, 627
MslI	CAYNNNNRTG	1 cut(s)	754
Msp20I	TGGCCA	1 cut(s)	581
MspI	CCGG	4 cut(s)	195, 308, 524, 846
MspR9I	CCNGG	2 cut(s)	309, 659
MunI	CAATTG	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	659
MwoI	GCNNNNNNNGC	2 cut(s)	240, 359
NarI	GGCGCC	1 cut(s)	828
NciI	CCSGG	1 cut(s)	309
NdeII	GATC	1 cut(s)	791
NlaIII	CATG	1 cut(s)	492
NlaIV	GGNNCC	6 cut(s)	301, 302, 663, 762, 812, 829
NmeAIII	GCCGAG	1 cut(s)	423
NmuCI	GTSAC	2 cut(s)	260, 722
PcsI	WCGNNNNNNNCGW	2 cut(s)	270, 750
PfeI	GAWTC	1 cut(s)	746
PfoI	TCCNGGA	1 cut(s)	657
PinAI	ACCGGT	1 cut(s)	523
PkrI	GCNGC	5 cut(s)	230, 233, 257, 355, 904
PleI	GAGTC	1 cut(s)	185
PluTI	GGCGCC	1 cut(s)	831
PpsI	GAGTC	1 cut(s)	185
Ppu21I	YACGTR	1 cut(s)	754
Psp6I	CCWGG	1 cut(s)	657
PspGI	CCWGG	1 cut(s)	657
PspN4I	GGNNCC	6 cut(s)	301, 302, 663, 762, 812, 829
PspOMI	GGGCCC	1 cut(s)	299
PspPI	GGNCC	5 cut(s)	299, 300, 526, 761, 810
PsuI	RGATCY	1 cut(s)	791
RsaI	GTAC	2 cut(s)	425, 806
RsaNI	GTAC	2 cut(s)	424, 805
RseI	CAYNNNNRTG	1 cut(s)	754
SaqAI	TTAA	4 cut(s)	185, 513, 567, 627
SatI	GCNGC	5 cut(s)	229, 232, 256, 354, 903
Sau3AI	GATC	1 cut(s)	791
Sau96I	GGNCC	5 cut(s)	299, 300, 526, 761, 810
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	2 cut(s)	309, 659
SduI	GDGCHC	1 cut(s)	303
SfaNI	GCATC	2 cut(s)	325, 890
SfcI	CTRYAG	1 cut(s)	855
SfoI	GGCGCC	1 cut(s)	829
SinI	GGWCC	2 cut(s)	526, 761
SmiMI	CAYNNNNRTG	1 cut(s)	754
SmlI	CTYRAG	1 cut(s)	839
SmoI	CTYRAG	1 cut(s)	839
Sse9I	AATT	6 cut(s)	49, 91, 133, 357, 450, 910
SsiI	CCGC	9 cut(s)	88, 228, 231, 234, 243, 255, 258, 353, 362
SspDI	GGCGCC	1 cut(s)	827
SspI	AATATT	1 cut(s)	781
StyD4I	CCNGG	2 cut(s)	307, 657
StyI	CCWWGG	1 cut(s)	582
TaaI	ACNGT	6 cut(s)	224, 266, 346, 598, 694, 835
TaiI	ACGT	2 cut(s)	561, 756
TaqI	TCGA	1 cut(s)	636
TaqII	GACCGA	1 cut(s)	369
TasI	AATT	6 cut(s)	49, 91, 133, 357, 450, 910
TauI	GCSGC	4 cut(s)	231, 234, 258, 356
TfiI	GAWTC	1 cut(s)	746
Tru1I	TTAA	4 cut(s)	185, 513, 567, 627
Tru9I	TTAA	4 cut(s)	185, 513, 567, 627
TscAI	CASTG	4 cut(s)	229, 351, 771, 838
TseFI	GTSAC	2 cut(s)	260, 722
TseI	GCWGC	1 cut(s)	902
Tsp45I	GTSAC	2 cut(s)	260, 722
TspDTI	ATGAA	4 cut(s)	459, 553, 643, 660
TspRI	CASTG	4 cut(s)	229, 351, 771, 838
VpaK11BI	GGWCC	2 cut(s)	526, 761
XcmI	CCANNNNNNNNNTGG	1 cut(s)	781
XmiI	GTMKAC	1 cut(s)	858
ZraI	GACGTC	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.