Chloroplast processing
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G24590 AT3G24590 |
| fragaria_vesca | FvH4_1g04510 |
| malus_domestica | MD02G1044900.v1.1 MD15G1183400.v1.1 |
| prunus_persica | Prupe.7G232700_v2.0.a1 Prupe.7G232700_v2.0.a1 |
| pyrus_communis | pycom02g03760 pycom15g16520 |
| rosa_chinensis | RchiOBHm_Chr2g0090191 |
| rosa_laevigata | RLG00000016087 RLG00000016089 |
| rosa_multiflora | Rmu_sc0007981.1_g000001 Rmu_sc0011117.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00151380 |
| rosa_rugosa | Rorug02G0005500 |
| rosa_samantha | Rh2AG051300 Rh2BG050000 Rh2BG050100 Rh2CG052300 |
| rosa_wichuraiana | Rw2G004530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 289 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 575 |
| Acc36I | ACCTGC | 1 cut(s) | 289 |
| AccB1I | GGYRCC | 1 cut(s) | 845 |
| AccBSI | CCGCTC | 1 cut(s) | 315 |
| AccI | GTMKAC | 1 cut(s) | 563 |
| AccII | CGCG | 1 cut(s) | 356 |
| AciI | CCGC | 6 cut(s) | 153, 224, 270, 282, 315, 371 |
| AclWI | GGATC | 1 cut(s) | 804 |
| AcuI | CTGAAG | 1 cut(s) | 533 |
| AcyI | GRCGYC | 1 cut(s) | 846 |
| AfaI | GTAC | 2 cut(s) | 422, 692 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 819 |
| AflIII | ACRYGT | 2 cut(s) | 13, 769 |
| AgsI | TTSAA | 4 cut(s) | 123, 175, 680, 1018 |
| AluBI | AGCT | 3 cut(s) | 410, 637, 759 |
| AluI | AGCT | 3 cut(s) | 410, 637, 759 |
| Alw26I | GTCTC | 5 cut(s) | 22, 456, 854, 906, 951 |
| AlwI | GGATC | 1 cut(s) | 804 |
| AoxI | GGCC | 1 cut(s) | 827 |
| ApeKI | GCWGC | 1 cut(s) | 872 |
| AspLEI | GCGC | 2 cut(s) | 848, 965 |
| AspS9I | GGNCC | 3 cut(s) | 232, 317, 779 |
| AsuHPI | GGTGA | 6 cut(s) | 127, 221, 260, 287, 620, 752 |
| AvaII | GGWCC | 3 cut(s) | 232, 317, 779 |
| BanI | GGYRCC | 1 cut(s) | 845 |
| BbsI | GAAGAC | 2 cut(s) | 365, 571 |
| BbvI | GCAGC | 1 cut(s) | 859 |
| BccI | CCATC | 3 cut(s) | 248, 272, 730 |
| BciVI | GTATCC | 1 cut(s) | 453 |
| BcoDI | GTCTC | 5 cut(s) | 22, 456, 854, 906, 951 |
| BfoI | RGCGCY | 2 cut(s) | 849, 966 |
| BfuAI | ACCTGC | 1 cut(s) | 289 |
| BfuI | GTATCC | 1 cut(s) | 453 |
| BisI | GCNGC | 2 cut(s) | 372, 873 |
| BlpI | GCTNAGC | 1 cut(s) | 411 |
| BlsI | GCNGC | 2 cut(s) | 373, 874 |
| Bme18I | GGWCC | 3 cut(s) | 232, 317, 779 |
| BmgT120I | GGNCC | 3 cut(s) | 232, 317, 779 |
| BmiI | GGNNCC | 2 cut(s) | 780, 847 |
| BmsI | GCATC | 1 cut(s) | 998 |
| BpiI | GAAGAC | 2 cut(s) | 365, 571 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 411 |
| BpuEI | CTTGAG | 1 cut(s) | 878 |
| BsaAI | YACGTR | 2 cut(s) | 14, 772 |
| BsaHI | GRCGYC | 1 cut(s) | 846 |
| BsaI | GGTCTC | 1 cut(s) | 456 |
| BsaJI | CCNNGG | 5 cut(s) | 219, 235, 416, 600, 849 |
| BsaWI | WCCGGW | 1 cut(s) | 396 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 819 |
| Bse1I | ACTGG | 4 cut(s) | 542, 868, 896, 941 |
| Bse3DI | GCAATG | 2 cut(s) | 196, 634 |
| BseDI | CCNNGG | 5 cut(s) | 219, 235, 416, 600, 849 |
| BseGI | GGATG | 3 cut(s) | 295, 460, 672 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 819 |
| BseMI | GCAATG | 2 cut(s) | 196, 634 |
| BseMII | CTCAG | 4 cut(s) | 402, 738, 962, 1007 |
| BseNI | ACTGG | 4 cut(s) | 542, 868, 896, 941 |
| BseRI | GAGGAG | 3 cut(s) | 255, 276, 279 |
| BseXI | GCAGC | 1 cut(s) | 859 |
| Bsh1236I | CGCG | 1 cut(s) | 356 |
| BshFI | GGCC | 1 cut(s) | 829 |
| BshNI | GGYRCC | 1 cut(s) | 845 |
| BsiSI | CCGG | 1 cut(s) | 397 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 819 |
| BsmAI | GTCTC | 5 cut(s) | 22, 456, 854, 906, 951 |
| BsnI | GGCC | 1 cut(s) | 829 |
| Bso31I | GGTCTC | 1 cut(s) | 456 |
| Bsp143I | GATC | 1 cut(s) | 809 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 411 |
| BspACI | CCGC | 6 cut(s) | 153, 224, 270, 282, 315, 371 |
| BspANI | GGCC | 1 cut(s) | 829 |
| BspCNI | CTCAG | 4 cut(s) | 403, 737, 961, 1006 |
| BspFNI | CGCG | 1 cut(s) | 356 |
| BspLI | GGNNCC | 2 cut(s) | 780, 847 |
| BspMI | ACCTGC | 1 cut(s) | 289 |
| BspPI | GGATC | 1 cut(s) | 804 |
| BspQI | GCTCTTC | 1 cut(s) | 305 |
| BspT107I | GGYRCC | 1 cut(s) | 845 |
| BspTNI | GGTCTC | 1 cut(s) | 456 |
| BsrBI | CCGCTC | 1 cut(s) | 315 |
| BsrDI | GCAATG | 2 cut(s) | 196, 634 |
| BsrI | ACTGG | 4 cut(s) | 542, 868, 896, 941 |
| BssECI | CCNNGG | 5 cut(s) | 219, 235, 416, 600, 849 |
| BssMI | GATC | 1 cut(s) | 809 |
| BssNAI | GTATAC | 1 cut(s) | 564 |
| BssNI | GRCGYC | 1 cut(s) | 846 |
| BssT1I | CCWWGG | 2 cut(s) | 219, 600 |
| Bst1107I | GTATAC | 1 cut(s) | 564 |
| Bst4CI | ACNGT | 3 cut(s) | 236, 364, 853 |
| Bst6I | CTCTTC | 1 cut(s) | 305 |
| BstACI | GRCGYC | 1 cut(s) | 846 |
| BstBAI | YACGTR | 2 cut(s) | 14, 772 |
| BstC8I | GCNNGC | 3 cut(s) | 187, 390, 789 |
| BstDEI | CTNAG | 4 cut(s) | 411, 724, 948, 993 |
| BstDSI | CCRYGG | 2 cut(s) | 235, 849 |
| BstF5I | GGATG | 3 cut(s) | 295, 460, 672 |
| BstFNI | CGCG | 1 cut(s) | 356 |
| BstH2I | RGCGCY | 2 cut(s) | 849, 966 |
| BstHHI | GCGC | 2 cut(s) | 848, 965 |
| BstKTI | GATC | 1 cut(s) | 812 |
| BstMAI | GTCTC | 5 cut(s) | 22, 456, 854, 906, 951 |
| BstMBI | GATC | 1 cut(s) | 809 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 191, 377 |
| BstUI | CGCG | 1 cut(s) | 356 |
| BstV1I | GCAGC | 1 cut(s) | 859 |
| BstV2I | GAAGAC | 2 cut(s) | 365, 571 |
| BstX2I | RGATCY | 1 cut(s) | 809 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 520 |
| BstYI | RGATCY | 1 cut(s) | 809 |
| BstZ17I | GTATAC | 1 cut(s) | 564 |
| BsuI | GTATCC | 1 cut(s) | 453 |
| BsuRI | GGCC | 1 cut(s) | 829 |
| BtgI | CCRYGG | 2 cut(s) | 235, 849 |
| BtsCI | GGATG | 3 cut(s) | 295, 460, 672 |
| BtsI | GCAGTG | 1 cut(s) | 782 |
| BtsIMutI | CAGTG | 3 cut(s) | 782, 903, 948 |
| BveI | ACCTGC | 1 cut(s) | 289 |
| Cac8I | GCNNGC | 3 cut(s) | 187, 390, 789 |
| CfoI | GCGC | 2 cut(s) | 848, 965 |
| Cfr13I | GGNCC | 3 cut(s) | 232, 317, 779 |
| CpoI | CGGWCCG | 1 cut(s) | 232 |
| CseI | GACGC | 1 cut(s) | 362 |
| Csp6I | GTAC | 2 cut(s) | 421, 691 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 838, 873 |
| CspI | CGGWCCG | 1 cut(s) | 232 |
| CviAII | CATG | 2 cut(s) | 439, 507 |
| CviJI | RGCY | 8 cut(s) | 334, 410, 415, 505, 637, 759, 791, 829 |
| CviKI_1 | RGCY | 8 cut(s) | 334, 410, 415, 505, 637, 759, 791, 829 |
| CviQI | GTAC | 2 cut(s) | 421, 691 |
| DdeI | CTNAG | 4 cut(s) | 411, 724, 948, 993 |
| DinI | GGCGCC | 1 cut(s) | 847 |
| DpnI | GATC | 1 cut(s) | 811 |
| DpnII | GATC | 1 cut(s) | 809 |
| DraI | TTTAAA | 2 cut(s) | 198, 532 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 575 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 575 |
| Eam1104I | CTCTTC | 1 cut(s) | 305 |
| EarI | CTCTTC | 1 cut(s) | 305 |
| EciI | GGCGGA | 1 cut(s) | 297 |
| Eco130I | CCWWGG | 2 cut(s) | 219, 600 |
| Eco31I | GGTCTC | 1 cut(s) | 456 |
| Eco47I | GGWCC | 3 cut(s) | 232, 317, 779 |
| Eco57I | CTGAAG | 1 cut(s) | 533 |
| EcoT14I | CCWWGG | 2 cut(s) | 219, 600 |
| EgeI | GGCGCC | 1 cut(s) | 847 |
| EheI | GGCGCC | 1 cut(s) | 847 |
| ErhI | CCWWGG | 2 cut(s) | 219, 600 |
| FaeI | CATG | 2 cut(s) | 442, 510 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 350, 382 |
| FatI | CATG | 2 cut(s) | 438, 506 |
| FblI | GTMKAC | 1 cut(s) | 563 |
| Fnu4HI | GCNGC | 2 cut(s) | 372, 873 |
| FokI | GGATG | 3 cut(s) | 302, 467, 659 |
| Fsp4HI | GCNGC | 2 cut(s) | 372, 873 |
| GlaI | GCGC | 2 cut(s) | 847, 964 |
| GluI | GCNGC | 2 cut(s) | 372, 873 |
| HaeII | RGCGCY | 2 cut(s) | 849, 966 |
| HaeIII | GGCC | 1 cut(s) | 829 |
| HapII | CCGG | 1 cut(s) | 397 |
| HgaI | GACGC | 1 cut(s) | 362 |
| HhaI | GCGC | 2 cut(s) | 848, 965 |
| Hin1I | GRCGYC | 1 cut(s) | 846 |
| Hin1II | CATG | 2 cut(s) | 442, 510 |
| Hin6I | GCGC | 2 cut(s) | 846, 963 |
| HinP1I | GCGC | 2 cut(s) | 846, 963 |
| HinfI | GANTC | 4 cut(s) | 99, 203, 700, 764 |
| HpaII | CCGG | 1 cut(s) | 397 |
| HphI | GGTGA | 6 cut(s) | 127, 221, 260, 287, 620, 752 |
| Hpy166II | GTNNAC | 3 cut(s) | 539, 564, 782 |
| Hpy188I | TCNGA | 3 cut(s) | 98, 232, 500 |
| Hpy188III | TCNNGA | 3 cut(s) | 123, 326, 857 |
| Hpy8I | GTNNAC | 3 cut(s) | 539, 564, 782 |
| Hpy99I | CGWCG | 2 cut(s) | 353, 356 |
| HpyAV | CCTTC | 7 cut(s) | 438, 557, 599, 696, 908, 953, 967 |
| HpyCH4III | ACNGT | 3 cut(s) | 236, 364, 853 |
| HpyCH4IV | ACGT | 2 cut(s) | 13, 771 |
| HpyCH4V | TGCA | 1 cut(s) | 189 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 191, 377 |
| HpyF3I | CTNAG | 4 cut(s) | 411, 724, 948, 993 |
| HpySE526I | ACGT | 2 cut(s) | 13, 771 |
| Hsp92I | GRCGYC | 1 cut(s) | 846 |
| Hsp92II | CATG | 2 cut(s) | 442, 510 |
| HspAI | GCGC | 2 cut(s) | 846, 963 |
| KasI | GGCGCC | 1 cut(s) | 845 |
| Kzo9I | GATC | 1 cut(s) | 809 |
| LguI | GCTCTTC | 1 cut(s) | 305 |
| Lsp1109I | GCAGC | 1 cut(s) | 859 |
| LweI | GCATC | 1 cut(s) | 998 |
| MaeII | ACGT | 2 cut(s) | 13, 771 |
| MaeIII | GTNAC | 2 cut(s) | 484, 740 |
| MalI | GATC | 1 cut(s) | 811 |
| MbiI | CCGCTC | 1 cut(s) | 315 |
| MboI | GATC | 1 cut(s) | 809 |
| MboII | GAAGA | 5 cut(s) | 319, 322, 370, 571, 819 |
| MflI | RGATCY | 1 cut(s) | 809 |
| MluCI | AATT | 3 cut(s) | 91, 468, 1018 |
| Mly113I | GGCGCC | 1 cut(s) | 846 |
| MlyI | GAGTC | 3 cut(s) | 108, 197, 694 |
| MseI | TTAA | 5 cut(s) | 54, 197, 531, 585, 645 |
| MslI | CAYNNNNRTG | 1 cut(s) | 772 |
| MspI | CCGG | 1 cut(s) | 397 |
| MvnI | CGCG | 1 cut(s) | 356 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 191, 377 |
| NarI | GGCGCC | 1 cut(s) | 846 |
| NdeII | GATC | 1 cut(s) | 809 |
| NlaIII | CATG | 2 cut(s) | 442, 510 |
| NlaIV | GGNNCC | 2 cut(s) | 780, 847 |
| NmeAIII | GCCGAG | 1 cut(s) | 441 |
| NmuCI | GTSAC | 1 cut(s) | 740 |
| PaqCI | CACCTGC | 1 cut(s) | 289 |
| PciSI | GCTCTTC | 1 cut(s) | 305 |
| PfeI | GAWTC | 1 cut(s) | 764 |
| PkrI | GCNGC | 2 cut(s) | 373, 874 |
| PleI | GAGTC | 3 cut(s) | 107, 197, 694 |
| PluTI | GGCGCC | 1 cut(s) | 849 |
| PpsI | GAGTC | 3 cut(s) | 107, 197, 694 |
| Ppu21I | YACGTR | 2 cut(s) | 14, 772 |
| PspN4I | GGNNCC | 2 cut(s) | 780, 847 |
| PspPI | GGNCC | 3 cut(s) | 232, 317, 779 |
| PsuI | RGATCY | 1 cut(s) | 809 |
| RsaI | GTAC | 2 cut(s) | 422, 692 |
| RsaNI | GTAC | 2 cut(s) | 421, 691 |
| RseI | CAYNNNNRTG | 1 cut(s) | 772 |
| Rsr2I | CGGWCCG | 1 cut(s) | 232 |
| RsrII | CGGWCCG | 1 cut(s) | 232 |
| SapI | GCTCTTC | 1 cut(s) | 305 |
| SaqAI | TTAA | 5 cut(s) | 54, 197, 531, 585, 645 |
| SatI | GCNGC | 2 cut(s) | 372, 873 |
| Sau3AI | GATC | 1 cut(s) | 809 |
| Sau96I | GGNCC | 3 cut(s) | 232, 317, 779 |
| SchI | GAGTC | 3 cut(s) | 108, 197, 694 |
| SfaNI | GCATC | 1 cut(s) | 998 |
| SfoI | GGCGCC | 1 cut(s) | 847 |
| SinI | GGWCC | 3 cut(s) | 232, 317, 779 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 772 |
| SmlI | CTYRAG | 1 cut(s) | 857 |
| SmoI | CTYRAG | 1 cut(s) | 857 |
| Sse9I | AATT | 3 cut(s) | 91, 468, 1018 |
| SsiI | CCGC | 6 cut(s) | 153, 224, 270, 282, 315, 371 |
| SspDI | GGCGCC | 1 cut(s) | 845 |
| SspI | AATATT | 1 cut(s) | 799 |
| StyI | CCWWGG | 2 cut(s) | 219, 600 |
| TaaI | ACNGT | 3 cut(s) | 236, 364, 853 |
| TaiI | ACGT | 2 cut(s) | 16, 774 |
| TaqII | GACCGA | 1 cut(s) | 480 |
| TasI | AATT | 3 cut(s) | 91, 468, 1018 |
| TauI | GCSGC | 1 cut(s) | 374 |
| TfiI | GAWTC | 1 cut(s) | 764 |
| Tru1I | TTAA | 5 cut(s) | 54, 197, 531, 585, 645 |
| Tru9I | TTAA | 5 cut(s) | 54, 197, 531, 585, 645 |
| TscAI | CASTG | 3 cut(s) | 789, 903, 948 |
| TseFI | GTSAC | 1 cut(s) | 740 |
| TseI | GCWGC | 1 cut(s) | 872 |
| Tsp45I | GTSAC | 1 cut(s) | 740 |
| TspDTI | ATGAA | 4 cut(s) | 394, 571, 661, 678 |
| TspRI | CASTG | 3 cut(s) | 789, 903, 948 |
| VpaK11BI | GGWCC | 3 cut(s) | 232, 317, 779 |
| XmiI | GTMKAC | 1 cut(s) | 563 |