Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010175

Physical Location & Seq

Genomic Coordinates Reverse (-)

3632604 .. 3634888

Gene Structure 2285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1044900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGCTCTCTCTACATGTCCTCCCTCCATCGCGTTCCCTCCAAAACCCTAACTTCAACCCTACCCACTTCTCCACCTCATTCCAAATCCCTAATTTCACTGTCCTCAGTCTCCACTCAGTTCCGAAAACCCACTTCAAAGCCCATAACTTTCTACGATTTAAGCTCCCTAATTGTAAAACCCACCTCAGAAAACTTGCTTGCAATGCTCTGAAGGACACCGGCGATAAAACGAAGCCGGTTTTGGGCAGTGGGGGTGGCGATGGTGGCGGAGGGGGCGGTGGTGATGACGGAGGGGATGATGAGCAGGTGGAGAAGAAGAGCGGGCCTTTTCCAGAATGGTTCAGTATCACCACCGACGATGCGAAGACGGTGTTTGCGGCGATTGCAGTGTCGCTTGCGTTTCGGAGTTTCGTAGCTGAGCCAAGGTTCATTCCTTCGTTGTCAATGTATCCGACTTTGGATGTGGGAGATCGAATTGTAGCAGAAAAGGTTTCATATTATTTCAGAAAGCCATGTGCCAATGATGTAGTTATCTTTAAAAGTCCACCAGTTCTTCAACAAGTAGGATATACTGACTATGATGTCTTCATTAAACGAATTGTTGCCAAGGAAGGTGATACTGTAGAGGTACACAACGGGAAGCTCATAGTTAATGGAGTGGAGAGAGATGAAAAATTCATCCTTGAACCACCTGCATATGATATGACTCCTATTCGTGTGCCCGAGAACTCAGTTTTCGTGATGGGTGACAATCGAAACAACAGCTACGACTCACACGTATGGGGTCCATTGCCAACCAAGAATATTTTAGGAAGATCCCTGTTTCGGTATTGGCCACCAAAGAGGATCGGTCCCACAGTTCTTGAGACTGGCTGTGCTGCTGATAAGCCGGAGAGTATTCCAGCGTCTCAGCAAAAGGAAGGTCAGGAGAGCATTCCAACGTCTCAGCTAAAGGAAGGTGTATCATTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0055035 GO:0061024 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

325

Amino Acids

35.68

Weight (kDa)

7.69

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S26	PF10502	121 - 278	6.4e-42	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24590 AT3G24590
fragaria_vesca	FvH4_1g04510
malus_domestica	MD02G1044900.v1.1 MD15G1183400.v1.1
prunus_persica	Prupe.7G232700_v2.0.a1 Prupe.7G232700_v2.0.a1
pyrus_communis	pycom02g03760 pycom15g16520
rosa_chinensis	RchiOBHm_Chr2g0090191
rosa_laevigata	RLG00000016087 RLG00000016089
rosa_multiflora	Rmu_sc0007981.1_g000001 Rmu_sc0011117.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151380
rosa_rugosa	Rorug02G0005500
rosa_samantha	Rh2AG051300 Rh2BG050000 Rh2BG050100 Rh2CG052300
rosa_wichuraiana	Rw2G004530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	295, 700
AasI	GACNNNNNNGTC	1 cut(s)	581
Acc36I	ACCTGC	2 cut(s)	295, 700
AccBSI	CCGCTC	1 cut(s)	321
AccII	CGCG	1 cut(s)	31
AciI	CCGC	4 cut(s)	267, 276, 321, 377
AclWI	GGATC	2 cut(s)	810, 854
AcoI	YGGCCR	1 cut(s)	833
AcsI	RAATTY	1 cut(s)	674
AcuI	CTGAAG	1 cut(s)	230
AfaI	GTAC	1 cut(s)	630
AfiI	CCNNNNNNNGG	2 cut(s)	242, 825
AflIII	ACRYGT	2 cut(s)	13, 775
AgsI	TTSAA	5 cut(s)	55, 136, 557, 686, 970
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	5 cut(s)	163, 416, 643, 765, 949
AluI	AGCT	5 cut(s)	163, 416, 643, 765, 949
Alw26I	GTCTC	4 cut(s)	113, 860, 912, 948
AlwI	GGATC	2 cut(s)	810, 854
Ama87I	CYCGRG	1 cut(s)	722
AoxI	GGCC	2 cut(s)	323, 833
ApeKI	GCWGC	1 cut(s)	878
ApoI	RAATTY	1 cut(s)	674
ArsI	GACNNNNNNTTYG	2 cut(s)	907, 939
AspS9I	GGNCC	3 cut(s)	323, 785, 851
AsuHPI	GGTGA	4 cut(s)	293, 340, 626, 758
AvaI	CYCGRG	1 cut(s)	722
AvaII	GGWCC	2 cut(s)	785, 851
BaeGI	GKGCMC	1 cut(s)	723
BalI	TGGCCA	1 cut(s)	835
BbsI	GAAGAC	2 cut(s)	371, 577
BbvI	GCAGC	1 cut(s)	865
BccI	CCATC	3 cut(s)	34, 254, 736
BciVI	GTATCC	1 cut(s)	459
BcoDI	GTCTC	4 cut(s)	113, 860, 912, 948
BfmI	CTRYAG	1 cut(s)	621
BfuAI	ACCTGC	2 cut(s)	295, 700
BfuI	GTATCC	1 cut(s)	459
BisI	GCNGC	2 cut(s)	378, 879
BlpI	GCTNAGC	1 cut(s)	417
BlsI	GCNGC	2 cut(s)	379, 880
Bme18I	GGWCC	2 cut(s)	785, 851
BmeT110I	CYCGRG	1 cut(s)	722
BmgT120I	GGNCC	3 cut(s)	323, 785, 851
BmiI	GGNNCC	2 cut(s)	786, 853
BmsI	GCATC	1 cut(s)	349
BpiI	GAAGAC	2 cut(s)	371, 577
Bpu1102I	GCTNAGC	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	884
BsaAI	YACGTR	1 cut(s)	778
BsaJI	CCNNGG	2 cut(s)	422, 606
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 825
Bse118I	RCCGGY	2 cut(s)	218, 235
Bse1I	ACTGG	2 cut(s)	548, 874
Bse3DI	GCAATG	2 cut(s)	208, 788
BseDI	CCNNGG	2 cut(s)	422, 606
BseGI	GGATG	3 cut(s)	301, 466, 678
BseLI	CCNNNNNNNGG	2 cut(s)	242, 825
BseMI	GCAATG	2 cut(s)	208, 788
BseMII	CTCAG	7 cut(s)	118, 129, 199, 408, 744, 923, 959
BseNI	ACTGG	2 cut(s)	548, 874
BseSI	GKGCMC	1 cut(s)	723
BseXI	GCAGC	1 cut(s)	865
Bsh1236I	CGCG	1 cut(s)	31
BshFI	GGCC	2 cut(s)	325, 835
BsiHKCI	CYCGRG	1 cut(s)	722
BsiSI	CCGG	3 cut(s)	219, 236, 890
BslFI	GGGAC	1 cut(s)	837
BslI	CCNNNNNNNGG	2 cut(s)	242, 825
BsmAI	GTCTC	4 cut(s)	113, 860, 912, 948
BsmBI	CGTCTC	2 cut(s)	912, 948
BsmFI	GGGAC	1 cut(s)	837
BsmI	GAATGC	1 cut(s)	933
BsnI	GGCC	2 cut(s)	325, 835
BsoBI	CYCGRG	1 cut(s)	722
Bsp1286I	GDGCHC	1 cut(s)	723
Bsp143I	GATC	3 cut(s)	469, 815, 846
Bsp1720I	GCTNAGC	1 cut(s)	417
BspACI	CCGC	4 cut(s)	267, 276, 321, 377
BspANI	GGCC	2 cut(s)	325, 835
BspCNI	CTCAG	7 cut(s)	117, 128, 198, 409, 743, 922, 958
BspFNI	CGCG	1 cut(s)	31
BspLI	GGNNCC	2 cut(s)	786, 853
BspMI	ACCTGC	2 cut(s)	295, 700
BspPI	GGATC	2 cut(s)	810, 854
BspQI	GCTCTTC	1 cut(s)	311
BsrBI	CCGCTC	1 cut(s)	321
BsrDI	GCAATG	2 cut(s)	208, 788
BsrFI	RCCGGY	2 cut(s)	218, 235
BsrI	ACTGG	2 cut(s)	548, 874
BssAI	RCCGGY	2 cut(s)	218, 235
BssECI	CCNNGG	2 cut(s)	422, 606
BssMI	GATC	3 cut(s)	469, 815, 846
BssT1I	CCWWGG	2 cut(s)	422, 606
Bst4CI	ACNGT	4 cut(s)	100, 370, 622, 859
Bst6I	CTCTTC	1 cut(s)	311
BstBAI	YACGTR	1 cut(s)	778
BstC8I	GCNNGC	3 cut(s)	199, 323, 396
BstDEI	CTNAG	7 cut(s)	104, 115, 185, 417, 730, 909, 945
BstF5I	GGATG	3 cut(s)	301, 466, 678
BstFNI	CGCG	1 cut(s)	31
BstKTI	GATC	3 cut(s)	472, 818, 849
BstMAI	GTCTC	4 cut(s)	113, 860, 912, 948
BstMBI	GATC	3 cut(s)	469, 815, 846
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 264, 273, 383
BstNSI	RCATGY	1 cut(s)	17
BstSFI	CTRYAG	1 cut(s)	621
BstSLI	GKGCMC	1 cut(s)	723
BstUI	CGCG	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	865
BstV2I	GAAGAC	2 cut(s)	371, 577
BstX2I	RGATCY	1 cut(s)	815
BstYI	RGATCY	1 cut(s)	815
BsuI	GTATCC	1 cut(s)	459
BsuRI	GGCC	2 cut(s)	325, 835
BtgZI	GCGATG	2 cut(s)	12, 273
BtsCI	GGATG	3 cut(s)	301, 466, 678
BtsI	GCAGTG	2 cut(s)	253, 393
BtsIMutI	CAGTG	3 cut(s)	96, 253, 393
BveI	ACCTGC	2 cut(s)	295, 700
Cac8I	GCNNGC	3 cut(s)	199, 323, 396
Cfr10I	RCCGGY	2 cut(s)	218, 235
Cfr13I	GGNCC	3 cut(s)	323, 785, 851
CseI	GACGC	1 cut(s)	894
Csp6I	GTAC	1 cut(s)	629
CspCI	CAANNNNNGTGG	2 cut(s)	844, 879
CviAII	CATG	2 cut(s)	14, 513
CviQI	GTAC	1 cut(s)	629
DdeI	CTNAG	7 cut(s)	104, 115, 185, 417, 730, 909, 945
DpnI	GATC	3 cut(s)	471, 817, 848
DpnII	GATC	3 cut(s)	469, 815, 846
DraI	TTTAAA	1 cut(s)	538
DrdI	GACNNNNNNGTC	1 cut(s)	581
DseDI	GACNNNNNNGTC	1 cut(s)	581
EaeI	YGGCCR	1 cut(s)	833
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
EciI	GGCGGA	1 cut(s)	282
Eco130I	CCWWGG	2 cut(s)	422, 606
Eco47I	GGWCC	2 cut(s)	785, 851
Eco57I	CTGAAG	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	722
EcoT14I	CCWWGG	2 cut(s)	422, 606
ErhI	CCWWGG	2 cut(s)	422, 606
Esp3I	CGTCTC	2 cut(s)	912, 948
FaeI	CATG	2 cut(s)	17, 516
FaqI	GGGAC	1 cut(s)	837
FatI	CATG	2 cut(s)	13, 512
FauI	CCCGC	1 cut(s)	314
FauNDI	CATATG	1 cut(s)	697
Fnu4HI	GCNGC	2 cut(s)	378, 879
FokI	GGATG	3 cut(s)	308, 473, 665
Fsp4HI	GCNGC	2 cut(s)	378, 879
GluI	GCNGC	2 cut(s)	378, 879
HaeIII	GGCC	2 cut(s)	325, 835
HapII	CCGG	3 cut(s)	219, 236, 890
HgaI	GACGC	1 cut(s)	894
Hin1II	CATG	2 cut(s)	17, 516
HinfI	GANTC	2 cut(s)	706, 770
HpaII	CCGG	3 cut(s)	219, 236, 890
HphI	GGTGA	4 cut(s)	293, 340, 626, 758
Hpy166II	GTNNAC	2 cut(s)	545, 631
Hpy188I	TCNGA	6 cut(s)	123, 188, 210, 405, 453, 506
Hpy188III	TCNNGA	4 cut(s)	332, 739, 863, 926
Hpy8I	GTNNAC	2 cut(s)	545, 631
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	5 cut(s)	205, 444, 605, 914, 950
HpyCH4III	ACNGT	4 cut(s)	100, 370, 622, 859
HpyCH4IV	ACGT	2 cut(s)	777, 941
HpyCH4V	TGCA	3 cut(s)	201, 386, 695
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 264, 273, 383
HpyF3I	CTNAG	7 cut(s)	104, 115, 185, 417, 730, 909, 945
HpySE526I	ACGT	2 cut(s)	777, 941
Hsp92II	CATG	2 cut(s)	17, 516
Kzo9I	GATC	3 cut(s)	469, 815, 846
LguI	GCTCTTC	1 cut(s)	311
LmnI	GCTCC	1 cut(s)	168
Lsp1109I	GCAGC	1 cut(s)	865
LweI	GCATC	1 cut(s)	349
MaeII	ACGT	2 cut(s)	777, 941
MaeIII	GTNAC	1 cut(s)	746
MalI	GATC	3 cut(s)	471, 817, 848
MbiI	CCGCTC	1 cut(s)	321
MboI	GATC	3 cut(s)	469, 815, 846
MboII	GAAGA	6 cut(s)	325, 328, 376, 545, 577, 825
MflI	RGATCY	1 cut(s)	815
MhlI	GDGCHC	1 cut(s)	723
MlsI	TGGCCA	1 cut(s)	835
MluCI	AATT	6 cut(s)	91, 169, 474, 597, 674, 970
MluNI	TGGCCA	1 cut(s)	835
MlyI	GAGTC	2 cut(s)	700, 764
MmeI	TCCRAC	2 cut(s)	476, 962
Mox20I	TGGCCA	1 cut(s)	835
MscI	TGGCCA	1 cut(s)	835
MseI	TTAA	4 cut(s)	159, 537, 591, 651
MslI	CAYNNNNRTG	1 cut(s)	778
Msp20I	TGGCCA	1 cut(s)	835
MspI	CCGG	3 cut(s)	219, 236, 890
Mva1269I	GAATGC	1 cut(s)	933
MvnI	CGCG	1 cut(s)	31
MwoI	GCNNNNNNNGC	4 cut(s)	203, 264, 273, 383
NdeI	CATATG	1 cut(s)	697
NdeII	GATC	3 cut(s)	469, 815, 846
NlaIII	CATG	2 cut(s)	17, 516
NlaIV	GGNNCC	2 cut(s)	786, 853
NmuCI	GTSAC	1 cut(s)	746
NspI	RCATGY	1 cut(s)	17
PaqCI	CACCTGC	2 cut(s)	295, 700
PciI	ACATGT	1 cut(s)	13
PciSI	GCTCTTC	1 cut(s)	311
PcsI	WCGNNNNNNNCGW	1 cut(s)	774
PctI	GAATGC	1 cut(s)	933
PkrI	GCNGC	2 cut(s)	379, 880
PleI	GAGTC	2 cut(s)	700, 764
PpsI	GAGTC	2 cut(s)	700, 764
Ppu21I	YACGTR	1 cut(s)	778
PscI	ACATGT	1 cut(s)	13
PspN4I	GGNNCC	2 cut(s)	786, 853
PspPI	GGNCC	3 cut(s)	323, 785, 851
PsuI	RGATCY	1 cut(s)	815
RsaI	GTAC	1 cut(s)	630
RsaNI	GTAC	1 cut(s)	629
RseI	CAYNNNNRTG	1 cut(s)	778
SapI	GCTCTTC	1 cut(s)	311
SaqAI	TTAA	4 cut(s)	159, 537, 591, 651
SatI	GCNGC	2 cut(s)	378, 879
Sau3AI	GATC	3 cut(s)	469, 815, 846
Sau96I	GGNCC	3 cut(s)	323, 785, 851
SchI	GAGTC	2 cut(s)	700, 764
SduI	GDGCHC	1 cut(s)	723
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	1 cut(s)	621
SgrAI	CRCCGGYG	1 cut(s)	218
SinI	GGWCC	2 cut(s)	785, 851
SmiMI	CAYNNNNRTG	1 cut(s)	778
SmlI	CTYRAG	1 cut(s)	863
SmoI	CTYRAG	1 cut(s)	863
Sse9I	AATT	6 cut(s)	91, 169, 474, 597, 674, 970
SsiI	CCGC	4 cut(s)	267, 276, 321, 377
SspI	AATATT	1 cut(s)	805
StyI	CCWWGG	2 cut(s)	422, 606
TaaI	ACNGT	4 cut(s)	100, 370, 622, 859
TaiI	ACGT	2 cut(s)	780, 944
TaqI	TCGA	2 cut(s)	472, 754
TaqII	GACCGA	1 cut(s)	839
TasI	AATT	6 cut(s)	91, 169, 474, 597, 674, 970
TauI	GCSGC	1 cut(s)	380
Tru1I	TTAA	4 cut(s)	159, 537, 591, 651
Tru9I	TTAA	4 cut(s)	159, 537, 591, 651
TscAI	CASTG	3 cut(s)	103, 253, 393
TseFI	GTSAC	1 cut(s)	746
TseI	GCWGC	1 cut(s)	878
Tsp45I	GTSAC	1 cut(s)	746
TspDTI	ATGAA	5 cut(s)	418, 483, 577, 667, 684
TspGWI	ACGGA	1 cut(s)	303
TspRI	CASTG	3 cut(s)	103, 253, 393
VpaK11BI	GGWCC	2 cut(s)	785, 851
XapI	RAATTY	1 cut(s)	674
XceI	RCATGY	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.