Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010175

Physical Location & Seq

Genomic Coordinates Reverse (-)

2514497 .. 2516923

Gene Structure 2427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g03760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGCACAGAGAGAAAAGTTACCCAAAAGCTACAAAATTTGCGGAGACTGAATTGAACGCATATCTTAGCTTGAACCAAAGAGAGATGCTCTCTCTACATGTCTTCCCTCCATCAGCTTCCCTCCAAAACCCTAACTTCAACCCTACCCACTTCTCCACCCCAATCCAAACCCCTAATTTCACTGTCCTCAGTCTCCACTCAATTCCGAAAACCCACTTCAAAGCCCAGAACTTTCTACGATTTAAGCTCCCTAATTGTAAAACCCAGCTCAGAAAACTTTCTTGCAATGCTCTGAAAGACACCGGCGATGAAACGAAGCCGGTTTTGGGCAGTGGGGGTGGCGATGGTGGCGGAGGAGGCGGTGGTGATGACGGAGGGGATGATGAGCAGGTGGAGAAAAAGAGTGGGCCTTTTCCGGAATGGTTCAGTATCACTACCGACGATGCGAAGACGGTGTTTGCGGCGATTGCAGTGTCGCTTGCGTTTCGGAGTTTCGTAGCTGAGCCGAGGTTCATTCCTTCGTTGTCAATGTATCCGACCTTGGATGTGGGAGATCGAATTGTAGCAGAAAAGGTTTCATATTATTTCAGAAAGCCATGTGCCAATGATGTAGTTATCTTTAAAAGTCCACCAGTCCTTCAACAAGTAGGATATACTGACTATGATGTCTTCATTAAACGAGTTGTTGCCAAGGAAGGTGATACTGTAGAGGTACGCAATGGGAAGCTCATAGTTAATGGAGTGGAGAGAGATGAAAAATTCATCCTTGAACCACCTGCTTATGATATGACTCCTATTCGTGTGCCTGAGAACTCAGTTTTCGTGATGGGTGATAATCGAAACAACAGCTATGACTCACACGTATGGGGTCCATTGCCAACCAAGAATATTTTAGGAAGATCCCTGTTTCGGTATTGGCCACCAAAAAGGATCGGTCCCACGGTTCTTGAGACTGGCTGTGCTGCTGATAAGCCGGAGAGTGTTCCAGCGTCTCAGCAAAAGGAAGGTCAGGAGAGCATTCCAGCGTCTCAGGTAAAGGAAGGTCAGGAGAGCATTCCAGCGTCTCAGCTAAAGGAAGGTGTATCATTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0055035 GO:0061024 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

365

Amino Acids

40.16

Weight (kDa)

6.62

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S26	PF10502	149 - 306	3.2e-42	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24590 AT3G24590
fragaria_vesca	FvH4_1g04510
malus_domestica	MD02G1044900.v1.1 MD15G1183400.v1.1
prunus_persica	Prupe.7G232700_v2.0.a1 Prupe.7G232700_v2.0.a1
pyrus_communis	pycom02g03760 pycom15g16520
rosa_chinensis	RchiOBHm_Chr2g0090191
rosa_laevigata	RLG00000016087 RLG00000016089
rosa_multiflora	Rmu_sc0007981.1_g000001 Rmu_sc0011117.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151380
rosa_rugosa	Rorug02G0005500
rosa_samantha	Rh2AG051300 Rh2BG050000 Rh2BG050100 Rh2CG052300
rosa_wichuraiana	Rw2G004530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	379, 784
AasI	GACNNNNNNGTC	1 cut(s)	665
Acc36I	ACCTGC	2 cut(s)	379, 784
AccIII	TCCGGA	1 cut(s)	415
AciI	CCGC	4 cut(s)	41, 351, 360, 461
AclWI	GGATC	2 cut(s)	894, 938
AcoI	YGGCCR	1 cut(s)	917
AcsI	RAATTY	2 cut(s)	35, 758
AfaI	GTAC	1 cut(s)	714
AfiI	CCNNNNNNNGG	2 cut(s)	326, 909
AflIII	ACRYGT	2 cut(s)	97, 859
AgsI	TTSAA	7 cut(s)	55, 73, 139, 220, 641, 770, 1090
AjuI	GAANNNNNNNTTGG	2 cut(s)	308, 340
AluBI	AGCT	9 cut(s)	29, 69, 116, 247, 268, 500, 727, 849, 1069
AluI	AGCT	9 cut(s)	29, 69, 116, 247, 268, 500, 727, 849, 1069
Alw26I	GTCTC	6 cut(s)	38, 197, 944, 996, 1032, 1068
AlwI	GGATC	2 cut(s)	894, 938
Aor13HI	TCCGGA	1 cut(s)	415
AoxI	GGCC	2 cut(s)	407, 917
ApeKI	GCWGC	1 cut(s)	962
ApoI	RAATTY	2 cut(s)	35, 758
ArsI	GACNNNNNNTTYG	2 cut(s)	991, 1023
Asp700I	GAANNNNTTC	1 cut(s)	277
AspS9I	GGNCC	3 cut(s)	407, 869, 935
AsuHPI	GGTGA	3 cut(s)	377, 710, 842
AvaII	GGWCC	2 cut(s)	869, 935
BalI	TGGCCA	1 cut(s)	919
BbsI	GAAGAC	3 cut(s)	94, 455, 661
BbvI	GCAGC	1 cut(s)	949
BccI	CCATC	3 cut(s)	118, 338, 820
BciVI	GTATCC	1 cut(s)	543
BcoDI	GTCTC	6 cut(s)	38, 197, 944, 996, 1032, 1068
BfmI	CTRYAG	1 cut(s)	705
BfuAI	ACCTGC	2 cut(s)	379, 784
BfuI	GTATCC	1 cut(s)	543
BisI	GCNGC	2 cut(s)	462, 963
BlpI	GCTNAGC	1 cut(s)	501
BlsI	GCNGC	2 cut(s)	463, 964
Bme18I	GGWCC	2 cut(s)	869, 935
BmgT120I	GGNCC	3 cut(s)	407, 869, 935
BmiI	GGNNCC	2 cut(s)	870, 937
BmsI	GCATC	2 cut(s)	75, 433
BpiI	GAAGAC	3 cut(s)	94, 455, 661
BplI	GAGNNNNNCTC	4 cut(s)	72, 104, 74, 106
Bpu1102I	GCTNAGC	1 cut(s)	501
BpuEI	CTTGAG	1 cut(s)	968
BsaAI	YACGTR	1 cut(s)	862
BsaJI	CCNNGG	4 cut(s)	506, 540, 690, 939
BsaWI	WCCGGW	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 909
Bse118I	RCCGGY	2 cut(s)	302, 319
Bse1I	ACTGG	2 cut(s)	632, 958
Bse3DI	GCAATG	3 cut(s)	292, 724, 872
BseAI	TCCGGA	1 cut(s)	415
BseDI	CCNNGG	4 cut(s)	506, 540, 690, 939
BseGI	GGATG	3 cut(s)	385, 550, 762
BseLI	CCNNNNNNNGG	2 cut(s)	326, 909
BseMI	GCAATG	3 cut(s)	292, 724, 872
BseMII	CTCAG	8 cut(s)	202, 283, 492, 798, 828, 1007, 1043, 1079
BseNI	ACTGG	2 cut(s)	632, 958
BseRI	GAGGAG	1 cut(s)	369
BseXI	GCAGC	1 cut(s)	949
BseYI	CCCAGC	1 cut(s)	264
BshFI	GGCC	2 cut(s)	409, 919
BsiSI	CCGG	4 cut(s)	303, 320, 416, 974
BslFI	GGGAC	1 cut(s)	921
BslI	CCNNNNNNNGG	2 cut(s)	326, 909
BsmAI	GTCTC	6 cut(s)	38, 197, 944, 996, 1032, 1068
BsmBI	CGTCTC	3 cut(s)	996, 1032, 1068
BsmFI	GGGAC	1 cut(s)	921
BsmI	GAATGC	2 cut(s)	1017, 1053
BsnI	GGCC	2 cut(s)	409, 919
Bsp13I	TCCGGA	1 cut(s)	415
Bsp143I	GATC	3 cut(s)	553, 899, 930
Bsp1720I	GCTNAGC	1 cut(s)	501
BspACI	CCGC	4 cut(s)	41, 351, 360, 461
BspANI	GGCC	2 cut(s)	409, 919
BspCNI	CTCAG	8 cut(s)	201, 282, 493, 799, 827, 1006, 1042, 1078
BspEI	TCCGGA	1 cut(s)	415
BspLI	GGNNCC	2 cut(s)	870, 937
BspMI	ACCTGC	2 cut(s)	379, 784
BspPI	GGATC	2 cut(s)	894, 938
BsrDI	GCAATG	3 cut(s)	292, 724, 872
BsrFI	RCCGGY	2 cut(s)	302, 319
BsrI	ACTGG	2 cut(s)	632, 958
BssAI	RCCGGY	2 cut(s)	302, 319
BssECI	CCNNGG	4 cut(s)	506, 540, 690, 939
BssMI	GATC	3 cut(s)	553, 899, 930
BssT1I	CCWWGG	2 cut(s)	540, 690
Bst4CI	ACNGT	4 cut(s)	184, 454, 706, 943
BstBAI	YACGTR	1 cut(s)	862
BstC8I	GCNNGC	1 cut(s)	480
BstDEI	CTNAG	9 cut(s)	65, 188, 269, 501, 807, 814, 993, 1029, 1065
BstDSI	CCRYGG	1 cut(s)	939
BstF5I	GGATG	3 cut(s)	385, 550, 762
BstKTI	GATC	3 cut(s)	556, 902, 933
BstMAI	GTCTC	6 cut(s)	38, 197, 944, 996, 1032, 1068
BstMBI	GATC	3 cut(s)	553, 899, 930
BstMWI	GCNNNNNNNGC	3 cut(s)	348, 357, 467
BstNSI	RCATGY	1 cut(s)	101
BstSFI	CTRYAG	1 cut(s)	705
BstV1I	GCAGC	1 cut(s)	949
BstV2I	GAAGAC	3 cut(s)	94, 455, 661
BstX2I	RGATCY	1 cut(s)	899
BstYI	RGATCY	1 cut(s)	899
BsuI	GTATCC	1 cut(s)	543
BsuRI	GGCC	2 cut(s)	409, 919
BtgI	CCRYGG	1 cut(s)	939
BtgZI	GCGATG	2 cut(s)	321, 357
BtsCI	GGATG	3 cut(s)	385, 550, 762
BtsI	GCAGTG	2 cut(s)	337, 477
BtsIMutI	CAGTG	3 cut(s)	180, 337, 477
BveI	ACCTGC	2 cut(s)	379, 784
Cac8I	GCNNGC	1 cut(s)	480
Cfr10I	RCCGGY	2 cut(s)	302, 319
Cfr13I	GGNCC	3 cut(s)	407, 869, 935
CseI	GACGC	3 cut(s)	978, 1014, 1050
Csp6I	GTAC	1 cut(s)	713
CspCI	CAANNNNNGTGG	2 cut(s)	928, 963
CviAII	CATG	2 cut(s)	98, 597
CviQI	GTAC	1 cut(s)	713
DdeI	CTNAG	9 cut(s)	65, 188, 269, 501, 807, 814, 993, 1029, 1065
DpnI	GATC	3 cut(s)	555, 901, 932
DpnII	GATC	3 cut(s)	553, 899, 930
DraI	TTTAAA	1 cut(s)	622
DrdI	GACNNNNNNGTC	1 cut(s)	665
DseDI	GACNNNNNNGTC	1 cut(s)	665
EaeI	YGGCCR	1 cut(s)	917
EciI	GGCGGA	1 cut(s)	366
Eco130I	CCWWGG	2 cut(s)	540, 690
Eco47I	GGWCC	2 cut(s)	869, 935
EcoT14I	CCWWGG	2 cut(s)	540, 690
ErhI	CCWWGG	2 cut(s)	540, 690
Esp3I	CGTCTC	3 cut(s)	996, 1032, 1068
FaeI	CATG	2 cut(s)	101, 600
FaqI	GGGAC	1 cut(s)	921
FatI	CATG	2 cut(s)	97, 596
Fnu4HI	GCNGC	2 cut(s)	462, 963
FokI	GGATG	3 cut(s)	392, 557, 749
Fsp4HI	GCNGC	2 cut(s)	462, 963
GluI	GCNGC	2 cut(s)	462, 963
GsaI	CCCAGC	1 cut(s)	268
HaeIII	GGCC	2 cut(s)	409, 919
HapII	CCGG	4 cut(s)	303, 320, 416, 974
HgaI	GACGC	3 cut(s)	978, 1014, 1050
Hin1II	CATG	2 cut(s)	101, 600
HinfI	GANTC	2 cut(s)	790, 854
HpaII	CCGG	4 cut(s)	303, 320, 416, 974
HphI	GGTGA	3 cut(s)	377, 710, 842
Hpy166II	GTNNAC	1 cut(s)	629
Hpy188I	TCNGA	6 cut(s)	207, 272, 294, 489, 537, 590
Hpy188III	TCNNGA	5 cut(s)	416, 823, 947, 1010, 1046
Hpy8I	GTNNAC	1 cut(s)	629
Hpy99I	CGWCG	1 cut(s)	443
HpyAV	CCTTC	6 cut(s)	528, 647, 689, 998, 1034, 1070
HpyCH4III	ACNGT	4 cut(s)	184, 454, 706, 943
HpyCH4IV	ACGT	1 cut(s)	861
HpyCH4V	TGCA	3 cut(s)	4, 285, 470
HpyF10VI	GCNNNNNNNGC	3 cut(s)	348, 357, 467
HpyF3I	CTNAG	9 cut(s)	65, 188, 269, 501, 807, 814, 993, 1029, 1065
HpySE526I	ACGT	1 cut(s)	861
Hsp92II	CATG	2 cut(s)	101, 600
Kpn2I	TCCGGA	1 cut(s)	415
Kzo9I	GATC	3 cut(s)	553, 899, 930
LmnI	GCTCC	1 cut(s)	252
Lsp1109I	GCAGC	1 cut(s)	949
LweI	GCATC	2 cut(s)	75, 433
MaeII	ACGT	1 cut(s)	861
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	3 cut(s)	555, 901, 932
MboI	GATC	3 cut(s)	553, 899, 930
MboII	GAAGA	4 cut(s)	94, 460, 661, 909
MflI	RGATCY	1 cut(s)	899
MlsI	TGGCCA	1 cut(s)	919
MluCI	AATT	8 cut(s)	35, 50, 175, 201, 253, 558, 758, 1090
MluNI	TGGCCA	1 cut(s)	919
MlyI	GAGTC	2 cut(s)	784, 848
MmeI	TCCRAC	1 cut(s)	560
MnlI	CCTC	8 cut(s)	117, 131, 197, 347, 350, 368, 501, 703
Mox20I	TGGCCA	1 cut(s)	919
MroI	TCCGGA	1 cut(s)	415
MroXI	GAANNNNTTC	1 cut(s)	277
MscI	TGGCCA	1 cut(s)	919
MseI	TTAA	4 cut(s)	243, 621, 675, 735
MslI	CAYNNNNRTG	1 cut(s)	862
Msp20I	TGGCCA	1 cut(s)	919
MspI	CCGG	4 cut(s)	303, 320, 416, 974
Mva1269I	GAATGC	2 cut(s)	1017, 1053
MwoI	GCNNNNNNNGC	3 cut(s)	348, 357, 467
NdeII	GATC	3 cut(s)	553, 899, 930
NlaIII	CATG	2 cut(s)	101, 600
NlaIV	GGNNCC	2 cut(s)	870, 937
NmeAIII	GCCGAG	1 cut(s)	531
NspI	RCATGY	1 cut(s)	101
PaqCI	CACCTGC	2 cut(s)	379, 784
PciI	ACATGT	1 cut(s)	97
PctI	GAATGC	2 cut(s)	1017, 1053
PdmI	GAANNNNTTC	1 cut(s)	277
PkrI	GCNGC	2 cut(s)	463, 964
PleI	GAGTC	2 cut(s)	784, 848
PpsI	GAGTC	2 cut(s)	784, 848
Ppu21I	YACGTR	1 cut(s)	862
PscI	ACATGT	1 cut(s)	97
PspFI	CCCAGC	1 cut(s)	264
PspN4I	GGNNCC	2 cut(s)	870, 937
PspPI	GGNCC	3 cut(s)	407, 869, 935
PsuI	RGATCY	1 cut(s)	899
RsaI	GTAC	1 cut(s)	714
RsaNI	GTAC	1 cut(s)	713
RseI	CAYNNNNRTG	1 cut(s)	862
SaqAI	TTAA	4 cut(s)	243, 621, 675, 735
SatI	GCNGC	2 cut(s)	462, 963
Sau3AI	GATC	3 cut(s)	553, 899, 930
Sau96I	GGNCC	3 cut(s)	407, 869, 935
SchI	GAGTC	2 cut(s)	784, 848
SfaNI	GCATC	2 cut(s)	75, 433
SfcI	CTRYAG	1 cut(s)	705
SgrAI	CRCCGGYG	1 cut(s)	302
SinI	GGWCC	2 cut(s)	869, 935
SmiMI	CAYNNNNRTG	1 cut(s)	862
SmlI	CTYRAG	1 cut(s)	947
SmoI	CTYRAG	1 cut(s)	947
Sse9I	AATT	8 cut(s)	35, 50, 175, 201, 253, 558, 758, 1090
SsiI	CCGC	4 cut(s)	41, 351, 360, 461
SspI	AATATT	1 cut(s)	889
StyI	CCWWGG	2 cut(s)	540, 690
TaaI	ACNGT	4 cut(s)	184, 454, 706, 943
TaiI	ACGT	1 cut(s)	864
TaqI	TCGA	2 cut(s)	556, 838
TaqII	GACCGA	1 cut(s)	923
TasI	AATT	8 cut(s)	35, 50, 175, 201, 253, 558, 758, 1090
TauI	GCSGC	1 cut(s)	464
Tru1I	TTAA	4 cut(s)	243, 621, 675, 735
Tru9I	TTAA	4 cut(s)	243, 621, 675, 735
TscAI	CASTG	3 cut(s)	187, 337, 477
TseI	GCWGC	1 cut(s)	962
TspDTI	ATGAA	6 cut(s)	324, 502, 567, 661, 751, 768
TspGWI	ACGGA	1 cut(s)	387
TspRI	CASTG	3 cut(s)	187, 337, 477
VpaK11BI	GGWCC	2 cut(s)	869, 935
XapI	RAATTY	2 cut(s)	35, 758
XceI	RCATGY	1 cut(s)	101
XmnI	GAANNNNTTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.