Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010175

Physical Location & Seq

Genomic Coordinates Reverse (-)

11586848 .. 11589289

Gene Structure 2442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g16520.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGCTCTCTCTACACGTCTTCCCTCCATCAACTTACCTCCAAAACCCTAACTTCAACCCTACCCATTCATCCACCCCAATCCAAATCCCTAATTTCAAAGTCCTCAATCTCCACCCAATTTCAAAAACCAACTTCAAAGCCCTTAACTTTCGACGATTTAAGCTCCCAAATTGTAAAACCCATCTCAGAAAACTTTCTTGCAATGCTCTGGAGGACTCCGGCGAGGAAACGAAGGCGGTTTTGGGCAGTGGGGGTGGTGATGGTGGCGGAGGAGGCGGTGGTGATGGCGGAGGGGATGATGAGCAGGTGGAGAAGAAGAGTGGGACTTTTCCGGAATGGGTCAGTATCACTACCGGCGATGCAAAAACGGTGTTTGCGGCGATTGCAGTGTCCCTGGCGTTTCGGAGTTTCATAGCTGAGCCGAGGTTCATTCCTTCGTTGTCAATGTATCCTACTTTGGATGTGGGAGATGGAATTGTAGCAGAAAAGGTTTCATATTATCTCAGAAAGCCATGTGCGAATGATGTAGTTATCTTTAAAGTTCCACCAGTCCTCCAGCAAGTAGGATATACTGAGGACGATGTCTTCATTAAACGAATTGTTGCCAAGGAAGGTGATGCTGTAGAGGTGCGCAATGGGAAGCTCATAGTAAATGGAGTGGAGAGAAATGAAAAATTCATCCTTGAACCACCTGCATATAATATGACTCCTATTCGTGTGCCAGAGAACTCAGTTTTCGTGATGGGTGACAATCGAAACAACAGCTACGACTCGCACGTATGGGGTCCATTGCCAACCAAGAATATTTTAGGAAGATCGCTGTTTCGGTATTGGCCACCAAAGAGGATCGGTGCCACAGTTCATGAGACCGGCTGTGCTGCTGATAAGCCGGAGAGTATTCCAACGTCTCAGCTAAAGGAAGGTCTGGAAGGCATTCCAGCGTCTCAGCTAAATGAAGGTGTATCATTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0055035 GO:0061024 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

325

Amino Acids

35.31

Weight (kDa)

7.01

Isoelectric Point (pI)

34.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24590 AT3G24590
fragaria_vesca	FvH4_1g04510
malus_domestica	MD02G1044900.v1.1 MD15G1183400.v1.1
prunus_persica	Prupe.7G232700_v2.0.a1 Prupe.7G232700_v2.0.a1
pyrus_communis	pycom02g03760 pycom15g16520
rosa_chinensis	RchiOBHm_Chr2g0090191
rosa_laevigata	RLG00000016087 RLG00000016089
rosa_multiflora	Rmu_sc0007981.1_g000001 Rmu_sc0011117.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151380
rosa_rugosa	Rorug02G0005500
rosa_samantha	Rh2AG051300 Rh2BG050000 Rh2BG050100 Rh2CG052300
rosa_wichuraiana	Rw2G004530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	295, 700
Acc16I	TGCGCA	1 cut(s)	632
Acc36I	ACCTGC	2 cut(s)	295, 700
AccB1I	GGYRCC	1 cut(s)	851
AccIII	TCCGGA	1 cut(s)	331
AciI	CCGC	5 cut(s)	236, 267, 276, 288, 377
AclWI	GGATC	1 cut(s)	854
AcoI	YGGCCR	1 cut(s)	833
AcsI	RAATTY	1 cut(s)	674
AflIII	ACRYGT	1 cut(s)	13
AgsI	TTSAA	6 cut(s)	55, 97, 123, 136, 686, 970
AjiI	CACGTC	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	393
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	6 cut(s)	163, 416, 643, 765, 913, 949
AluI	AGCT	6 cut(s)	163, 416, 643, 765, 913, 949
Alw26I	GTCTC	3 cut(s)	860, 912, 948
AlwI	GGATC	1 cut(s)	854
Aor13HI	TCCGGA	1 cut(s)	331
AoxI	GGCC	1 cut(s)	833
ApeKI	GCWGC	1 cut(s)	878
ApoI	RAATTY	1 cut(s)	674
Asp700I	GAANNNNTTC	2 cut(s)	193, 933
AspLEI	GCGC	1 cut(s)	633
AspS9I	GGNCC	1 cut(s)	785
AsuHPI	GGTGA	4 cut(s)	269, 293, 626, 758
AvaII	GGWCC	1 cut(s)	785
BalI	TGGCCA	1 cut(s)	835
BanI	GGYRCC	1 cut(s)	851
BbsI	GAAGAC	2 cut(s)	10, 577
BbvI	GCAGC	1 cut(s)	865
BccI	CCATC	6 cut(s)	34, 189, 254, 278, 464, 736
BciT130I	CCWGG	1 cut(s)	395
BciVI	GTATCC	1 cut(s)	459
BcoDI	GTCTC	3 cut(s)	860, 912, 948
BfmI	CTRYAG	1 cut(s)	621
BfuAI	ACCTGC	2 cut(s)	295, 700
BfuI	GTATCC	1 cut(s)	459
BisI	GCNGC	2 cut(s)	378, 879
BlpI	GCTNAGC	1 cut(s)	417
BlsI	GCNGC	2 cut(s)	379, 880
Bme1390I	CCNGG	1 cut(s)	395
Bme18I	GGWCC	1 cut(s)	785
BmgBI	CACGTC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	785
BmiI	GGNNCC	2 cut(s)	786, 853
BmrFI	CCNGG	1 cut(s)	395
BmsI	GCATC	2 cut(s)	349, 607
BpiI	GAAGAC	2 cut(s)	10, 577
BpmI	CTGGAG	2 cut(s)	230, 539
Bpu1102I	GCTNAGC	1 cut(s)	417
BsaAI	YACGTR	1 cut(s)	778
BsaI	GGTCTC	1 cut(s)	860
BsaJI	CCNNGG	3 cut(s)	393, 422, 606
BsaWI	WCCGGW	1 cut(s)	331
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bse118I	RCCGGY	2 cut(s)	353, 869
Bse1I	ACTGG	1 cut(s)	548
Bse3DI	GCAATG	3 cut(s)	208, 640, 788
BseAI	TCCGGA	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	395
BseDI	CCNNGG	3 cut(s)	393, 422, 606
BseGI	GGATG	4 cut(s)	68, 301, 466, 678
BseMI	GCAATG	3 cut(s)	208, 640, 788
BseMII	CTCAG	7 cut(s)	199, 408, 517, 564, 744, 923, 959
BseNI	ACTGG	1 cut(s)	548
BseRI	GAGGAG	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	865
BshFI	GGCC	1 cut(s)	835
BshNI	GGYRCC	1 cut(s)	851
BsiSI	CCGG	5 cut(s)	219, 332, 354, 870, 890
BslFI	GGGAC	2 cut(s)	337, 376
BsmAI	GTCTC	3 cut(s)	860, 912, 948
BsmBI	CGTCTC	2 cut(s)	912, 948
BsmFI	GGGAC	2 cut(s)	337, 376
BsmI	GAATGC	1 cut(s)	933
BsnI	GGCC	1 cut(s)	835
Bso31I	GGTCTC	1 cut(s)	860
Bsp13I	TCCGGA	1 cut(s)	331
Bsp143I	GATC	2 cut(s)	815, 846
Bsp1720I	GCTNAGC	1 cut(s)	417
BspACI	CCGC	5 cut(s)	236, 267, 276, 288, 377
BspANI	GGCC	1 cut(s)	835
BspCNI	CTCAG	7 cut(s)	198, 409, 516, 565, 743, 922, 958
BspEI	TCCGGA	1 cut(s)	331
BspHI	TCATGA	1 cut(s)	862
BspLI	GGNNCC	2 cut(s)	786, 853
BspMI	ACCTGC	2 cut(s)	295, 700
BspPI	GGATC	1 cut(s)	854
BspT107I	GGYRCC	1 cut(s)	851
BspTNI	GGTCTC	1 cut(s)	860
BsrDI	GCAATG	3 cut(s)	208, 640, 788
BsrFI	RCCGGY	2 cut(s)	353, 869
BsrI	ACTGG	1 cut(s)	548
BssAI	RCCGGY	2 cut(s)	353, 869
BssECI	CCNNGG	3 cut(s)	393, 422, 606
BssMI	GATC	2 cut(s)	815, 846
BssT1I	CCWWGG	1 cut(s)	606
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	2 cut(s)	370, 859
Bst6I	CTCTTC	1 cut(s)	311
BstBAI	YACGTR	1 cut(s)	778
BstDEI	CTNAG	7 cut(s)	185, 417, 503, 573, 730, 909, 945
BstF5I	GGATG	4 cut(s)	68, 301, 466, 678
BstHHI	GCGC	1 cut(s)	633
BstKTI	GATC	2 cut(s)	818, 849
BstMAI	GTCTC	3 cut(s)	860, 912, 948
BstMBI	GATC	2 cut(s)	815, 846
BstMWI	GCNNNNNNNGC	2 cut(s)	273, 383
BstNI	CCWGG	1 cut(s)	395
BstSCI	CCNGG	1 cut(s)	393
BstSFI	CTRYAG	1 cut(s)	621
BstV1I	GCAGC	1 cut(s)	865
BstV2I	GAAGAC	2 cut(s)	10, 577
BsuI	GTATCC	1 cut(s)	459
BsuRI	GGCC	1 cut(s)	835
BtgZI	GCGATG	1 cut(s)	372
BtrI	CACGTC	1 cut(s)	16
BtsCI	GGATG	4 cut(s)	68, 301, 466, 678
BtsI	GCAGTG	2 cut(s)	253, 393
BtsIMutI	CAGTG	2 cut(s)	253, 393
BveI	ACCTGC	2 cut(s)	295, 700
CciI	TCATGA	1 cut(s)	862
CfoI	GCGC	1 cut(s)	633
Cfr10I	RCCGGY	2 cut(s)	353, 869
Cfr13I	GGNCC	1 cut(s)	785
CseI	GACGC	1 cut(s)	930
CviAII	CATG	2 cut(s)	513, 863
DdeI	CTNAG	7 cut(s)	185, 417, 503, 573, 730, 909, 945
DpnI	GATC	2 cut(s)	817, 848
DpnII	GATC	2 cut(s)	815, 846
DraI	TTTAAA	1 cut(s)	538
EaeI	YGGCCR	1 cut(s)	833
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
EciI	GGCGGA	2 cut(s)	282, 303
Eco130I	CCWWGG	1 cut(s)	606
Eco31I	GGTCTC	1 cut(s)	860
Eco47I	GGWCC	1 cut(s)	785
EcoRII	CCWGG	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	606
ErhI	CCWWGG	1 cut(s)	606
Esp3I	CGTCTC	2 cut(s)	912, 948
FaeI	CATG	2 cut(s)	516, 866
FaqI	GGGAC	2 cut(s)	337, 376
FatI	CATG	2 cut(s)	512, 862
Fnu4HI	GCNGC	2 cut(s)	378, 879
FokI	GGATG	4 cut(s)	55, 308, 473, 665
Fsp4HI	GCNGC	2 cut(s)	378, 879
FspI	TGCGCA	1 cut(s)	632
GlaI	GCGC	1 cut(s)	632
GluI	GCNGC	2 cut(s)	378, 879
GsuI	CTGGAG	2 cut(s)	230, 539
HaeIII	GGCC	1 cut(s)	835
HapII	CCGG	5 cut(s)	219, 332, 354, 870, 890
HgaI	GACGC	1 cut(s)	930
HhaI	GCGC	1 cut(s)	633
Hin1II	CATG	2 cut(s)	516, 866
Hin6I	GCGC	1 cut(s)	631
HinP1I	GCGC	1 cut(s)	631
HinfI	GANTC	3 cut(s)	215, 706, 770
HpaII	CCGG	5 cut(s)	219, 332, 354, 870, 890
HphI	GGTGA	4 cut(s)	269, 293, 626, 758
Hpy188I	TCNGA	3 cut(s)	188, 405, 506
Hpy188III	TCNNGA	5 cut(s)	209, 332, 739, 863, 926
Hpy99I	CGWCG	1 cut(s)	156
HpyAV	CCTTC	6 cut(s)	226, 444, 605, 914, 923, 950
HpyCH4III	ACNGT	2 cut(s)	370, 859
HpyCH4IV	ACGT	3 cut(s)	15, 777, 905
HpyCH4V	TGCA	4 cut(s)	201, 362, 386, 695
HpyF10VI	GCNNNNNNNGC	2 cut(s)	273, 383
HpyF3I	CTNAG	7 cut(s)	185, 417, 503, 573, 730, 909, 945
HpySE526I	ACGT	3 cut(s)	15, 777, 905
Hsp92II	CATG	2 cut(s)	516, 866
HspAI	GCGC	1 cut(s)	631
Kpn2I	TCCGGA	1 cut(s)	331
Kzo9I	GATC	2 cut(s)	815, 846
LmnI	GCTCC	1 cut(s)	168
Lsp1109I	GCAGC	1 cut(s)	865
LweI	GCATC	2 cut(s)	349, 607
MaeII	ACGT	3 cut(s)	15, 777, 905
MaeIII	GTNAC	1 cut(s)	746
MalI	GATC	2 cut(s)	817, 848
MboI	GATC	2 cut(s)	815, 846
MboII	GAAGA	5 cut(s)	10, 325, 328, 577, 825
MlsI	TGGCCA	1 cut(s)	835
MluCI	AATT	7 cut(s)	91, 117, 169, 474, 597, 674, 970
MluNI	TGGCCA	1 cut(s)	835
MlyI	GAGTC	3 cut(s)	209, 700, 764
MmeI	TCCRAC	1 cut(s)	926
Mox20I	TGGCCA	1 cut(s)	835
MroI	TCCGGA	1 cut(s)	331
MroXI	GAANNNNTTC	2 cut(s)	193, 933
MscI	TGGCCA	1 cut(s)	835
MseI	TTAA	4 cut(s)	144, 159, 537, 591
Msp20I	TGGCCA	1 cut(s)	835
MspI	CCGG	5 cut(s)	219, 332, 354, 870, 890
MspR9I	CCNGG	1 cut(s)	395
Mva1269I	GAATGC	1 cut(s)	933
MvaI	CCWGG	1 cut(s)	395
MwoI	GCNNNNNNNGC	2 cut(s)	273, 383
NdeII	GATC	2 cut(s)	815, 846
NlaIII	CATG	2 cut(s)	516, 866
NlaIV	GGNNCC	2 cut(s)	786, 853
NmeAIII	GCCGAG	1 cut(s)	447
NmuCI	GTSAC	1 cut(s)	746
NsbI	TGCGCA	1 cut(s)	632
PagI	TCATGA	1 cut(s)	862
PaqCI	CACCTGC	2 cut(s)	295, 700
PcsI	WCGNNNNNNNCGW	1 cut(s)	774
PctI	GAATGC	1 cut(s)	933
PdmI	GAANNNNTTC	2 cut(s)	193, 933
PflFI	GACNNNGTC	1 cut(s)	581
PkrI	GCNGC	2 cut(s)	379, 880
PleI	GAGTC	3 cut(s)	209, 700, 764
PpsI	GAGTC	3 cut(s)	209, 700, 764
Ppu21I	YACGTR	1 cut(s)	778
Psp6I	CCWGG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	2 cut(s)	786, 853
PspPI	GGNCC	1 cut(s)	785
PsyI	GACNNNGTC	1 cut(s)	581
SaqAI	TTAA	4 cut(s)	144, 159, 537, 591
SatI	GCNGC	2 cut(s)	378, 879
Sau3AI	GATC	2 cut(s)	815, 846
Sau96I	GGNCC	1 cut(s)	785
SchI	GAGTC	3 cut(s)	209, 700, 764
ScrFI	CCNGG	1 cut(s)	395
SfaNI	GCATC	2 cut(s)	349, 607
SfcI	CTRYAG	1 cut(s)	621
SinI	GGWCC	1 cut(s)	785
Sse9I	AATT	7 cut(s)	91, 117, 169, 474, 597, 674, 970
SsiI	CCGC	5 cut(s)	236, 267, 276, 288, 377
SspI	AATATT	1 cut(s)	805
StyD4I	CCNGG	1 cut(s)	393
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	2 cut(s)	370, 859
TaiI	ACGT	3 cut(s)	18, 780, 908
TaqI	TCGA	2 cut(s)	151, 754
TasI	AATT	7 cut(s)	91, 117, 169, 474, 597, 674, 970
TauI	GCSGC	1 cut(s)	380
Tru1I	TTAA	4 cut(s)	144, 159, 537, 591
Tru9I	TTAA	4 cut(s)	144, 159, 537, 591
TscAI	CASTG	2 cut(s)	253, 393
TseFI	GTSAC	1 cut(s)	746
TseI	GCWGC	1 cut(s)	878
Tsp45I	GTSAC	1 cut(s)	746
TspDTI	ATGAA	9 cut(s)	57, 400, 418, 483, 577, 667, 684, 851, 969
TspRI	CASTG	2 cut(s)	253, 393
Tth111I	GACNNNGTC	1 cut(s)	581
VpaK11BI	GGWCC	1 cut(s)	785
XapI	RAATTY	1 cut(s)	674
XmnI	GAANNNNTTC	2 cut(s)	193, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.