Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0010175

Physical Location & Seq

Genomic Coordinates Forward (+)

4297857 .. 4300518

Gene Structure 2662 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G004530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGATACAAGGGGAGAAGAAAAGTGGGCCCCTGCCGGAATGGTTGAATATAACAACTGATGATGCCAAGACGGTGTTTGCGGCAATTGCAGTATCGCTTGCGTTTCGGTCTTTCATAGCTGAGCCGAGGTTTATTCCTTCCTTGTCAATGTATCCTACTTTGGATGTTGGGGATAGAATTGTAGCTGAAAAGGTTTCATATTACTTCAGAAAGCCATGTGCCAATGATATAGTTATCTTTAAAAGTCCACCGGTCCTTCAGGAAGTAGGATATACTGACCTTGACGTCTTCATTAAACGAATAGTGGCGAAGGAAGGTGATACCATAGAGGTCCGCAATGGGAAGCTCATAGTTAATGGGGTGGAGAGAAATGAAAAATTCATCCTTGAACCACCTTCTTATAATATGACGCCTATTACTGTGCCAGAGAACTCTGTTTTTGTGATGGGTGACAATAGAAATAACAGCTATGATTCACACGTATGGGGTCCACTGCCAGCCAAGAACATTTTAGGCCGATCTATCTTTCGGTACTGGCCCCTGAAAAGGATTGGCGCCACGGTTCTTGAGACCGGTTGTGCTGTTGACAGGCAGGAGAGCGTTCCAGCGTCTCAACCAAAGGAAGGTGGATCATTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0055035 GO:0061024 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

213

Amino Acids

23.74

Weight (kDa)

6.62

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S26	PF10502	22 - 179	3.7e-43	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24590 AT3G24590
fragaria_vesca	FvH4_1g04510
malus_domestica	MD02G1044900.v1.1 MD15G1183400.v1.1
prunus_persica	Prupe.7G232700_v2.0.a1 Prupe.7G232700_v2.0.a1
pyrus_communis	pycom02g03760 pycom15g16520
rosa_chinensis	RchiOBHm_Chr2g0090191
rosa_laevigata	RLG00000016087 RLG00000016089
rosa_multiflora	Rmu_sc0007981.1_g000001 Rmu_sc0011117.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151380
rosa_rugosa	Rorug02G0005500
rosa_samantha	Rh2AG051300 Rh2BG050000 Rh2BG050100 Rh2CG052300
rosa_wichuraiana	Rw2G004530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
AasI	GACNNNNNNGTC	1 cut(s)	284
AatII	GACGTC	1 cut(s)	288
AccB1I	GGYRCC	1 cut(s)	554
AciI	CCGC	2 cut(s)	80, 334
AclWI	GGATC	1 cut(s)	637
AcsI	RAATTY	1 cut(s)	377
AcuI	CTGAAG	2 cut(s)	190, 242
AcyI	GRCGYC	3 cut(s)	285, 410, 555
AfaI	GTAC	1 cut(s)	533
AfiI	CCNNNNNNNGG	2 cut(s)	546, 623
AflIII	ACRYGT	1 cut(s)	478
AgeI	ACCGGT	2 cut(s)	250, 572
AgsI	TTSAA	3 cut(s)	46, 389, 637
AluBI	AGCT	4 cut(s)	119, 185, 346, 468
AluI	AGCT	4 cut(s)	119, 185, 346, 468
Alw26I	GTCTC	2 cut(s)	563, 615
AlwI	GGATC	1 cut(s)	637
AoxI	GGCC	3 cut(s)	26, 514, 536
ApaI	GGGCCC	1 cut(s)	30
ApoI	RAATTY	1 cut(s)	377
AsiGI	ACCGGT	2 cut(s)	250, 572
AspLEI	GCGC	1 cut(s)	557
AspS9I	GGNCC	6 cut(s)	26, 27, 253, 331, 488, 537
AsuHPI	GGTGA	2 cut(s)	329, 461
AvaII	GGWCC	3 cut(s)	253, 331, 488
BaeGI	GKGCMC	1 cut(s)	30
BanI	GGYRCC	1 cut(s)	554
BanII	GRGCYC	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	280
BccI	CCATC	1 cut(s)	439
BciVI	GTATCC	1 cut(s)	162
BcoDI	GTCTC	2 cut(s)	563, 615
BfoI	RGCGCY	1 cut(s)	558
BfuI	GTATCC	1 cut(s)	162
BisI	GCNGC	1 cut(s)	81
BlpI	GCTNAGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	82
Bme18I	GGWCC	3 cut(s)	253, 331, 488
BmgT120I	GGNCC	6 cut(s)	26, 27, 253, 331, 488, 537
BmiI	GGNNCC	5 cut(s)	28, 29, 489, 539, 556
BmsI	GCATC	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	280
Bpu1102I	GCTNAGC	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	587
BsaAI	YACGTR	1 cut(s)	481
BsaHI	GRCGYC	3 cut(s)	285, 410, 555
BsaI	GGTCTC	1 cut(s)	563
BsaJI	CCNNGG	2 cut(s)	125, 558
BsaWI	WCCGGW	2 cut(s)	250, 572
Bsc4I	CCNNNNNNNGG	2 cut(s)	546, 623
Bse118I	RCCGGY	2 cut(s)	250, 572
Bse1I	ACTGG	1 cut(s)	539
Bse3DI	GCAATG	1 cut(s)	343
BseDI	CCNNGG	2 cut(s)	125, 558
BseGI	GGATG	2 cut(s)	169, 381
BseLI	CCNNNNNNNGG	2 cut(s)	546, 623
BseMI	GCAATG	1 cut(s)	343
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	1 cut(s)	539
BseSI	GKGCMC	1 cut(s)	30
BshFI	GGCC	3 cut(s)	28, 516, 538
BshNI	GGYRCC	1 cut(s)	554
BshTI	ACCGGT	2 cut(s)	250, 572
BsiSI	CCGG	3 cut(s)	35, 251, 573
BslI	CCNNNNNNNGG	2 cut(s)	546, 623
BsmAI	GTCTC	2 cut(s)	563, 615
BsmBI	CGTCTC	1 cut(s)	615
BsnI	GGCC	3 cut(s)	28, 516, 538
Bso31I	GGTCTC	1 cut(s)	563
Bsp120I	GGGCCC	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	2 cut(s)	518, 629
Bsp1720I	GCTNAGC	1 cut(s)	120
BspACI	CCGC	2 cut(s)	80, 334
BspANI	GGCC	3 cut(s)	28, 516, 538
BspCNI	CTCAG	1 cut(s)	112
BspLI	GGNNCC	5 cut(s)	28, 29, 489, 539, 556
BspPI	GGATC	1 cut(s)	637
BspT107I	GGYRCC	1 cut(s)	554
BspTNI	GGTCTC	1 cut(s)	563
BsrDI	GCAATG	1 cut(s)	343
BsrFI	RCCGGY	2 cut(s)	250, 572
BsrI	ACTGG	1 cut(s)	539
BssAI	RCCGGY	2 cut(s)	250, 572
BssECI	CCNNGG	2 cut(s)	125, 558
BssMI	GATC	2 cut(s)	518, 629
BssNI	GRCGYC	3 cut(s)	285, 410, 555
Bst4CI	ACNGT	3 cut(s)	73, 421, 562
BstACI	GRCGYC	3 cut(s)	285, 410, 555
BstBAI	YACGTR	1 cut(s)	481
BstC8I	GCNNGC	2 cut(s)	99, 498
BstDEI	CTNAG	1 cut(s)	120
BstDSI	CCRYGG	1 cut(s)	558
BstF5I	GGATG	2 cut(s)	169, 381
BstH2I	RGCGCY	1 cut(s)	558
BstHHI	GCGC	1 cut(s)	557
BstKTI	GATC	2 cut(s)	521, 632
BstMAI	GTCTC	2 cut(s)	563, 615
BstMBI	GATC	2 cut(s)	518, 629
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstSLI	GKGCMC	1 cut(s)	30
BstV2I	GAAGAC	1 cut(s)	280
BsuI	GTATCC	1 cut(s)	162
BsuRI	GGCC	3 cut(s)	28, 516, 538
BtgI	CCRYGG	1 cut(s)	558
BtsCI	GGATG	2 cut(s)	169, 381
BtsI	GCAGTG	1 cut(s)	491
BtsIMutI	CAGTG	1 cut(s)	491
Cac8I	GCNNGC	2 cut(s)	99, 498
CfoI	GCGC	1 cut(s)	557
Cfr10I	RCCGGY	2 cut(s)	250, 572
Cfr13I	GGNCC	6 cut(s)	26, 27, 253, 331, 488, 537
CseI	GACGC	2 cut(s)	418, 597
Csp6I	GTAC	1 cut(s)	532
CspAI	ACCGGT	2 cut(s)	250, 572
CspCI	CAANNNNNGTGG	2 cut(s)	547, 582
CviAII	CATG	1 cut(s)	216
CviQI	GTAC	1 cut(s)	532
DdeI	CTNAG	1 cut(s)	120
DinI	GGCGCC	1 cut(s)	556
DpnI	GATC	2 cut(s)	520, 631
DpnII	GATC	2 cut(s)	518, 629
DraI	TTTAAA	1 cut(s)	241
DrdI	GACNNNNNNGTC	1 cut(s)	284
DseDI	GACNNNNNNGTC	1 cut(s)	284
Eco24I	GRGCYC	1 cut(s)	30
Eco31I	GGTCTC	1 cut(s)	563
Eco47I	GGWCC	3 cut(s)	253, 331, 488
Eco57I	CTGAAG	2 cut(s)	190, 242
EcoO109I	RGGNCCY	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	30
EgeI	GGCGCC	1 cut(s)	556
EheI	GGCGCC	1 cut(s)	556
Esp3I	CGTCTC	1 cut(s)	615
FaeI	CATG	1 cut(s)	219
FatI	CATG	1 cut(s)	215
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	2 cut(s)	176, 368
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	81
GlaI	GCGC	1 cut(s)	556
GluI	GCNGC	1 cut(s)	81
HaeII	RGCGCY	1 cut(s)	558
HaeIII	GGCC	3 cut(s)	28, 516, 538
HapII	CCGG	3 cut(s)	35, 251, 573
HgaI	GACGC	2 cut(s)	418, 597
HhaI	GCGC	1 cut(s)	557
Hin1I	GRCGYC	3 cut(s)	285, 410, 555
Hin1II	CATG	1 cut(s)	219
Hin6I	GCGC	1 cut(s)	555
HinP1I	GCGC	1 cut(s)	555
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HinfI	GANTC	1 cut(s)	473
HpaII	CCGG	3 cut(s)	35, 251, 573
HphI	GGTGA	2 cut(s)	329, 461
Hpy166II	GTNNAC	3 cut(s)	248, 491, 586
Hpy188I	TCNGA	1 cut(s)	209
Hpy188III	TCNNGA	2 cut(s)	260, 566
Hpy8I	GTNNAC	3 cut(s)	248, 491, 586
HpyAV	CCTTC	6 cut(s)	147, 266, 304, 308, 405, 617
HpyCH4III	ACNGT	3 cut(s)	73, 421, 562
HpyCH4IV	ACGT	2 cut(s)	285, 480
HpyCH4V	TGCA	1 cut(s)	89
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	2 cut(s)	285, 480
Hsp92I	GRCGYC	3 cut(s)	285, 410, 555
Hsp92II	CATG	1 cut(s)	219
HspAI	GCGC	1 cut(s)	555
KasI	GGCGCC	1 cut(s)	554
Kzo9I	GATC	2 cut(s)	518, 629
LweI	GCATC	1 cut(s)	52
MaeII	ACGT	2 cut(s)	285, 480
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	2 cut(s)	520, 631
MboI	GATC	2 cut(s)	518, 629
MboII	GAAGA	2 cut(s)	28, 280
MfeI	CAATTG	1 cut(s)	84
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	4 cut(s)	84, 177, 377, 637
Mly113I	GGCGCC	1 cut(s)	555
MnlI	CCTC	2 cut(s)	120, 322
MseI	TTAA	3 cut(s)	240, 294, 354
MslI	CAYNNNNRTG	1 cut(s)	481
MspI	CCGG	3 cut(s)	35, 251, 573
MunI	CAATTG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	86
NarI	GGCGCC	1 cut(s)	555
NdeII	GATC	2 cut(s)	518, 629
NlaIII	CATG	1 cut(s)	219
NlaIV	GGNNCC	5 cut(s)	28, 29, 489, 539, 556
NmeAIII	GCCGAG	1 cut(s)	150
NmuCI	GTSAC	1 cut(s)	449
PfeI	GAWTC	1 cut(s)	473
PinAI	ACCGGT	2 cut(s)	250, 572
PkrI	GCNGC	1 cut(s)	82
PluTI	GGCGCC	1 cut(s)	558
Ppu21I	YACGTR	1 cut(s)	481
PsiI	TTATAA	1 cut(s)	402
PspN4I	GGNNCC	5 cut(s)	28, 29, 489, 539, 556
PspOMI	GGGCCC	1 cut(s)	26
PspPI	GGNCC	6 cut(s)	26, 27, 253, 331, 488, 537
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
RseI	CAYNNNNRTG	1 cut(s)	481
SaqAI	TTAA	3 cut(s)	240, 294, 354
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	2 cut(s)	518, 629
Sau96I	GGNCC	6 cut(s)	26, 27, 253, 331, 488, 537
SduI	GDGCHC	1 cut(s)	30
SfaNI	GCATC	1 cut(s)	52
SfoI	GGCGCC	1 cut(s)	556
SinI	GGWCC	3 cut(s)	253, 331, 488
SmiMI	CAYNNNNRTG	1 cut(s)	481
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
Sse9I	AATT	4 cut(s)	84, 177, 377, 637
SsiI	CCGC	2 cut(s)	80, 334
SspDI	GGCGCC	1 cut(s)	554
TaaI	ACNGT	3 cut(s)	73, 421, 562
TaiI	ACGT	2 cut(s)	288, 483
TaqII	GACCGA	1 cut(s)	96
TasI	AATT	4 cut(s)	84, 177, 377, 637
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	3 cut(s)	240, 294, 354
Tru9I	TTAA	3 cut(s)	240, 294, 354
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	1 cut(s)	449
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	5 cut(s)	103, 186, 280, 370, 387
TspRI	CASTG	1 cut(s)	498
VpaK11BI	GGWCC	3 cut(s)	253, 331, 488
XapI	RAATTY	1 cut(s)	377
ZraI	GACGTC	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.