Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0010175

Physical Location & Seq

Genomic Coordinates Reverse (-)

3805149 .. 3805693

Gene Structure 545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016089

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAACCAAATTAATGGGAAGCTCATAGTTAATGGGGTGGAGAGAATTGAAAAATTCATTCTTGAACCACCTTCTTATAATATGACGCCTATTTCTATGCCAGAGAACTCTGTTTTTGTAATGGGTGACGATAGAAATAGCAGCTATGATTCACACGGCTCCACTGCCAGCCAAGAATATTTTAGGCCGATCTATCTTTTTATTGGCCCCCTGAAAAGGAGTGGCGCCACGGTTCTTGAGACCGGTTGTGCTGTTGACAAGCAGGAGAGGTTCCAGCGTCTCAACCAAAGGAAGGTGCATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0055035 GO:0061024 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

102

Amino Acids

11.53

Weight (kDa)

7.91

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24590 AT3G24590
fragaria_vesca	FvH4_1g04510
malus_domestica	MD02G1044900.v1.1 MD15G1183400.v1.1
prunus_persica	Prupe.7G232700_v2.0.a1 Prupe.7G232700_v2.0.a1
pyrus_communis	pycom02g03760 pycom15g16520
rosa_chinensis	RchiOBHm_Chr2g0090191
rosa_laevigata	RLG00000016087 RLG00000016089
rosa_multiflora	Rmu_sc0007981.1_g000001 Rmu_sc0011117.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151380
rosa_rugosa	Rorug02G0005500
rosa_samantha	Rh2AG051300 Rh2BG050000 Rh2BG050100 Rh2CG052300
rosa_wichuraiana	Rw2G004530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	78
AccB1I	GGYRCC	1 cut(s)	224
AcsI	RAATTY	1 cut(s)	53
AcyI	GRCGYC	2 cut(s)	86, 225
AfiI	CCNNNNNNNGG	2 cut(s)	216, 292
AgeI	ACCGGT	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	50, 65
AluBI	AGCT	2 cut(s)	22, 144
AluI	AGCT	2 cut(s)	22, 144
Alw26I	GTCTC	2 cut(s)	233, 284
AoxI	GGCC	2 cut(s)	185, 205
ApeKI	GCWGC	1 cut(s)	141
ApoI	RAATTY	1 cut(s)	53
AseI	ATTAAT	1 cut(s)	12
AsiGI	ACCGGT	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	137
BanI	GGYRCC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	153
BceAI	ACGGC	1 cut(s)	172
BcoDI	GTCTC	2 cut(s)	233, 284
BfoI	RGCGCY	1 cut(s)	228
BisI	GCNGC	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	4 cut(s)	160, 208, 226, 272
BpuEI	CTTGAG	1 cut(s)	257
BsaHI	GRCGYC	2 cut(s)	86, 225
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	228
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 292
Bse118I	RCCGGY	1 cut(s)	242
BseDI	CCNNGG	1 cut(s)	228
BseLI	CCNNNNNNNGG	2 cut(s)	216, 292
BseXI	GCAGC	1 cut(s)	153
BshFI	GGCC	2 cut(s)	187, 207
BshNI	GGYRCC	1 cut(s)	224
BshTI	ACCGGT	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	243
BslI	CCNNNNNNNGG	2 cut(s)	216, 292
BsmAI	GTCTC	2 cut(s)	233, 284
BsmBI	CGTCTC	1 cut(s)	284
BsnI	GGCC	2 cut(s)	187, 207
Bso31I	GGTCTC	1 cut(s)	233
Bsp143I	GATC	1 cut(s)	189
BspANI	GGCC	2 cut(s)	187, 207
BspLI	GGNNCC	4 cut(s)	160, 208, 226, 272
BspT107I	GGYRCC	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	233
BsrFI	RCCGGY	1 cut(s)	242
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	1 cut(s)	189
BssNI	GRCGYC	2 cut(s)	86, 225
Bst4CI	ACNGT	1 cut(s)	232
BstACI	GRCGYC	2 cut(s)	86, 225
BstC8I	GCNNGC	1 cut(s)	169
BstDSI	CCRYGG	1 cut(s)	228
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	1 cut(s)	192
BstMAI	GTCTC	2 cut(s)	233, 284
BstMBI	GATC	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	153
BstXI	CCANNNNNNTGG	1 cut(s)	14
BsuRI	GGCC	2 cut(s)	187, 207
BtgI	CCRYGG	1 cut(s)	228
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	2 cut(s)	162, 301
Cac8I	GCNNGC	1 cut(s)	169
CfoI	GCGC	1 cut(s)	227
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	206
CseI	GACGC	2 cut(s)	94, 266
CspAI	ACCGGT	1 cut(s)	242
CspCI	CAANNNNNGTGG	2 cut(s)	217, 252
CviJI	RGCY	6 cut(s)	22, 144, 159, 171, 187, 207
CviKI_1	RGCY	6 cut(s)	22, 144, 159, 171, 187, 207
DinI	GGCGCC	1 cut(s)	226
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
Eco31I	GGTCTC	1 cut(s)	233
EgeI	GGCGCC	1 cut(s)	226
EheI	GGCGCC	1 cut(s)	226
Esp3I	CGTCTC	1 cut(s)	284
FaiI	YATR	5 cut(s)	26, 78, 83, 98, 147
Fnu4HI	GCNGC	1 cut(s)	142
Fsp4HI	GCNGC	1 cut(s)	142
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	1 cut(s)	142
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	2 cut(s)	187, 207
HapII	CCGG	1 cut(s)	243
HgaI	GACGC	2 cut(s)	94, 266
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	2 cut(s)	86, 225
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188III	TCNNGA	2 cut(s)	62, 236
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	2 cut(s)	81, 286
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4V	TGCA	1 cut(s)	298
Hsp92I	GRCGYC	2 cut(s)	86, 225
HspAI	GCGC	1 cut(s)	225
KasI	GGCGCC	1 cut(s)	224
Kzo9I	GATC	1 cut(s)	189
LmnI	GCTCC	1 cut(s)	164
LpnPI	CCDG	6 cut(s)	114, 181, 224, 248, 256, 287
Lsp1109I	GCAGC	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MluCI	AATT	3 cut(s)	9, 45, 53
Mly113I	GGCGCC	1 cut(s)	225
MnlI	CCTC	1 cut(s)	261
MseI	TTAA	2 cut(s)	12, 30
MspI	CCGG	1 cut(s)	243
NarI	GGCGCC	1 cut(s)	225
NdeII	GATC	1 cut(s)	189
NlaIV	GGNNCC	4 cut(s)	160, 208, 226, 272
NmuCI	GTSAC	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	149
PinAI	ACCGGT	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	143
PluTI	GGCGCC	1 cut(s)	228
PshBI	ATTAAT	1 cut(s)	12
PsiI	TTATAA	1 cut(s)	78
PspN4I	GGNNCC	4 cut(s)	160, 208, 226, 272
PspPI	GGNCC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	12, 30
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	1 cut(s)	189
Sau96I	GGNCC	1 cut(s)	206
SetI	ASST	5 cut(s)	24, 73, 146, 272, 297
SfoI	GGCGCC	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	3 cut(s)	9, 45, 53
SspDI	GGCGCC	1 cut(s)	224
SspI	AATATT	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	232
TasI	AATT	3 cut(s)	9, 45, 53
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	2 cut(s)	12, 30
Tru9I	TTAA	2 cut(s)	12, 30
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	1 cut(s)	141
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	2 cut(s)	17, 46
TspRI	CASTG	1 cut(s)	169
VspI	ATTAAT	1 cut(s)	12
XapI	RAATTY	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.